Wall clock time and date at job start Mon Mar 30 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46837 * 2 1 4 4 C 1.31765 * 124.27634 * 90.00519 * 3 2 1 5 5 C 1.45503 * 114.86599 * 180.02562 * 4 3 2 6 6 C 1.39830 * 111.86978 * 359.97438 * 5 4 3 7 7 C 1.40648 * 120.22512 * 180.02562 * 6 5 4 8 8 C 1.35625 * 121.01001 * 359.97438 * 7 6 5 9 9 C 1.41075 * 120.16583 * 0.29391 * 8 7 6 10 10 C 1.41042 * 120.12126 * 179.72950 * 9 8 7 11 11 H 1.07990 * 120.00140 * 149.90384 * 10 9 8 12 12 C 1.39792 * 119.99480 * 329.90412 * 10 9 8 13 13 N 1.30987 * 119.99635 * 161.84749 * 12 10 9 14 14 Si 1.86795 * 120.00314 * 341.85432 * 12 10 9 15 15 H 1.48494 * 109.47510 * 95.41022 * 14 12 10 16 16 H 1.48504 * 109.47029 * 215.41188 * 14 12 10 17 17 H 1.48505 * 109.46936 * 335.40963 * 14 12 10 18 18 C 1.40662 * 119.76068 * 359.47238 * 9 8 7 19 19 O 1.35532 * 120.07892 * 180.25029 * 18 9 8 20 20 C 1.42898 * 116.99612 * 270.23592 * 19 18 9 21 21 S 1.75265 * 124.27853 * 270.01830 * 3 2 1 22 22 H 1.09002 * 109.46999 * 300.00292 * 1 2 3 23 23 H 1.08998 * 109.46770 * 59.99909 * 1 2 3 24 24 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47109 * 239.99730 * 2 1 3 26 26 H 1.09002 * 109.46625 * 119.99602 * 2 1 3 27 27 H 1.07994 * 122.56235 * 0.03147 * 4 3 2 28 28 H 1.08001 * 119.49637 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.91493 * 180.02562 * 8 7 6 30 30 H 0.96996 * 119.99867 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.46713 * 180.02562 * 20 19 18 32 32 H 1.08992 * 109.47233 * 299.99699 * 20 19 18 33 33 H 1.08997 * 109.46888 * 60.00529 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2797 2.1205 1.0888 5 6 2.7576 3.4740 0.8509 6 6 2.8581 3.7585 -0.5145 7 6 3.3045 5.0213 -0.9436 8 6 3.6440 5.9832 -0.0498 9 6 3.5592 5.7262 1.3347 10 6 3.9179 6.7253 2.2634 11 1 3.4376 6.7617 3.2299 12 6 4.8952 7.6686 1.9325 13 7 4.9848 8.7847 2.6122 14 14 6.0730 7.3374 0.5210 15 1 5.5556 7.9760 -0.7158 16 1 7.4078 7.9005 0.8476 17 1 6.1921 5.8724 0.3091 18 6 3.1104 4.4717 1.7858 19 8 3.0216 4.2196 3.1145 20 6 4.1796 3.6745 3.7501 21 16 2.3609 2.3517 -1.4482 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.1387 1.7198 2.0817 28 1 3.3781 5.2282 -2.0011 29 1 3.9842 6.9470 -0.3990 30 1 5.6631 9.4390 2.3828 31 1 3.9740 3.5206 4.8094 32 1 4.4330 2.7208 3.2873 33 1 5.0147 4.3659 3.6384 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396312349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:51 Heat of formation + Delta-G solvation = -15.106294 kcal Electronic energy + Delta-G solvation = -17206.528424 eV Core-core repulsion = 14516.138331 eV Total energy + Delta-G solvation = -2690.390093 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.92493 -36.50705 -35.67402 -33.79907 -32.14577 -29.82336 -28.09870 -26.18523 -25.00573 -23.76182 -21.70115 -20.86848 -19.43103 -17.54103 -17.19348 -15.53428 -15.42175 -15.13313 -14.57862 -14.29515 -14.01097 -13.60207 -13.35184 -13.09039 -12.85626 -12.62136 -12.26814 -11.89520 -11.51183 -11.41439 -11.15683 -10.99578 -10.89066 -10.67128 -10.42176 -10.11169 -9.88450 -9.78803 -9.38853 -8.75637 -8.39765 -7.55471 -7.12123 -6.91166 -4.55930 1.56876 2.23703 2.32036 2.82057 2.96186 3.04627 3.11895 3.20978 3.82080 4.19610 4.82394 4.93550 5.18421 5.28920 5.40831 5.60531 5.77874 5.86301 5.93373 5.97759 6.04564 6.13590 6.23914 6.24604 6.31789 6.37352 6.61837 6.76287 6.85440 6.89285 7.20071 7.31080 7.51081 7.75897 8.14948 8.29222 8.60322 8.85537 9.89252 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028812 B = 0.006819 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.576414 B = 4104.964409 C = 4762.587617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.166 4.166 4 C -0.111 4.111 5 C -0.040 4.040 6 C -0.225 4.225 7 C -0.051 4.051 8 C -0.188 4.188 9 C 0.078 3.922 10 C -0.420 4.420 11 H 0.101 0.899 12 C 0.082 3.918 13 N -0.794 5.794 14 Si 0.904 3.096 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.243 1.243 18 C -0.003 4.003 19 O -0.319 6.319 20 C 0.035 3.965 21 S 0.015 5.985 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.288 0.712 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -10.556 -4.038 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.280 4.280 4 C -0.142 4.142 5 C -0.046 4.046 6 C -0.339 4.339 7 C -0.074 4.074 8 C -0.208 4.208 9 C 0.074 3.926 10 C -0.448 4.448 11 H 0.119 0.881 12 C -0.139 4.139 13 N -0.417 5.417 14 Si 0.730 3.270 15 H -0.192 1.192 16 H -0.212 1.212 17 H -0.167 1.167 18 C -0.051 4.051 19 O -0.235 6.235 20 C -0.060 4.060 21 S 0.275 5.725 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.893 -10.601 -5.323 12.013 hybrid contribution 0.958 0.423 0.854 1.351 sum -0.934 -10.179 -4.469 11.156 Atomic orbital electron populations 1.21773 0.94713 1.01289 1.02625 1.20066 0.95958 0.90435 1.02509 1.23567 1.08278 0.99975 0.96223 1.20798 1.01840 0.93255 0.98302 1.19160 1.00484 0.92710 0.92279 1.21705 1.18748 0.98724 0.94738 1.19752 0.98634 0.90908 0.98068 1.20706 1.08204 0.98618 0.93290 1.17747 0.91285 0.91622 0.91979 1.19392 1.17226 1.05464 1.02748 0.88144 1.26231 0.97935 0.92850 0.96836 1.69752 1.29589 1.05222 1.37121 0.86423 0.78476 0.81677 0.80420 1.19164 1.21241 1.16662 1.18190 1.13818 0.91498 0.81567 1.85931 1.35109 1.82953 1.19506 1.22810 0.90096 0.96629 0.96503 1.83338 1.73692 1.06338 1.09150 0.92321 0.92425 0.92573 0.91250 0.90644 0.85190 0.87968 0.86933 0.90128 0.90791 0.95393 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.31 16 2 C -0.05 -0.64 6.37 -27.88 -0.18 -0.82 16 3 C -0.17 -2.81 5.63 -36.20 -0.20 -3.01 16 4 C -0.11 -2.12 10.09 -38.58 -0.39 -2.51 16 5 C -0.04 -0.90 6.03 -105.28 -0.64 -1.53 16 6 C -0.22 -4.90 6.50 -38.08 -0.25 -5.15 16 7 C -0.05 -1.12 9.98 -39.61 -0.40 -1.52 16 8 C -0.19 -4.40 7.07 -39.44 -0.28 -4.68 16 9 C 0.08 1.98 5.09 -106.84 -0.54 1.44 16 10 C -0.42 -11.09 9.15 -37.94 -0.35 -11.44 16 11 H 0.10 2.85 7.87 -52.49 -0.41 2.44 16 12 C 0.08 2.06 5.40 -17.33 -0.09 1.97 16 13 N -0.79 -20.27 13.94 55.54 0.77 -19.50 16 14 Si 0.90 19.71 24.51 -169.99 -4.17 15.55 16 15 H -0.27 -5.55 6.70 56.52 0.38 -5.17 16 16 H -0.29 -5.99 7.11 56.52 0.40 -5.58 16 17 H -0.24 -5.49 6.87 56.52 0.39 -5.10 16 18 C 0.00 -0.07 5.82 -37.54 -0.22 -0.29 16 19 O -0.32 -7.40 9.62 -18.29 -0.18 -7.58 16 20 C 0.03 0.66 11.13 101.05 1.12 1.79 16 21 S 0.01 0.26 23.20 -107.50 -2.49 -2.23 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 28 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.11 2.55 4.74 -52.49 -0.25 2.31 16 30 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 292.25 15.07 4.40 4.40 Total: -1.00 -27.33 292.25 -7.76 -35.09 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.06 Total: 1.33 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -2.04 Total: -27.06 kcal Atomic # 7 Polarization: -20.27 SS G_CDS: 0.77 Total: -19.50 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.18 Total: -7.58 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.17 Total: 15.55 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.49 Total: -2.23 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.33 -7.76 -35.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396312349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.981 kcal (2) G-P(sol) polarization free energy of solvation -27.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds