Wall clock time and date at job start Mon Mar 30 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46837 * 2 1 4 4 C 1.31765 * 124.27634 * 90.00519 * 3 2 1 5 5 C 1.45503 * 114.86599 * 180.02562 * 4 3 2 6 6 C 1.39830 * 111.86978 * 359.97438 * 5 4 3 7 7 C 1.40648 * 120.22512 * 180.02562 * 6 5 4 8 8 C 1.35625 * 121.01001 * 359.97438 * 7 6 5 9 9 C 1.41075 * 120.16583 * 0.29391 * 8 7 6 10 10 C 1.41042 * 120.12126 * 179.72950 * 9 8 7 11 11 H 1.07990 * 120.00140 * 149.90384 * 10 9 8 12 12 C 1.39792 * 119.99480 * 329.90412 * 10 9 8 13 13 N 1.30987 * 119.99635 * 161.84749 * 12 10 9 14 14 Si 1.86795 * 120.00314 * 341.85432 * 12 10 9 15 15 H 1.48494 * 109.47510 * 95.41022 * 14 12 10 16 16 H 1.48504 * 109.47029 * 215.41188 * 14 12 10 17 17 H 1.48505 * 109.46936 * 335.40963 * 14 12 10 18 18 C 1.40662 * 119.76068 * 359.47238 * 9 8 7 19 19 O 1.35532 * 120.07892 * 180.25029 * 18 9 8 20 20 C 1.42898 * 116.99612 * 270.23592 * 19 18 9 21 21 S 1.75265 * 124.27853 * 270.01830 * 3 2 1 22 22 H 1.09002 * 109.46999 * 300.00292 * 1 2 3 23 23 H 1.08998 * 109.46770 * 59.99909 * 1 2 3 24 24 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47109 * 239.99730 * 2 1 3 26 26 H 1.09002 * 109.46625 * 119.99602 * 2 1 3 27 27 H 1.07994 * 122.56235 * 0.03147 * 4 3 2 28 28 H 1.08001 * 119.49637 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.91493 * 180.02562 * 8 7 6 30 30 H 0.96996 * 119.99867 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.46713 * 180.02562 * 20 19 18 32 32 H 1.08992 * 109.47233 * 299.99699 * 20 19 18 33 33 H 1.08997 * 109.46888 * 60.00529 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2797 2.1205 1.0888 5 6 2.7576 3.4740 0.8509 6 6 2.8581 3.7585 -0.5145 7 6 3.3045 5.0213 -0.9436 8 6 3.6440 5.9832 -0.0498 9 6 3.5592 5.7262 1.3347 10 6 3.9179 6.7253 2.2634 11 1 3.4376 6.7617 3.2299 12 6 4.8952 7.6686 1.9325 13 7 4.9848 8.7847 2.6122 14 14 6.0730 7.3374 0.5210 15 1 5.5556 7.9760 -0.7158 16 1 7.4078 7.9005 0.8476 17 1 6.1921 5.8724 0.3091 18 6 3.1104 4.4717 1.7858 19 8 3.0216 4.2196 3.1145 20 6 4.1796 3.6745 3.7501 21 16 2.3609 2.3517 -1.4482 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.1387 1.7198 2.0817 28 1 3.3781 5.2282 -2.0011 29 1 3.9842 6.9470 -0.3990 30 1 5.6631 9.4390 2.3828 31 1 3.9740 3.5206 4.8094 32 1 4.4330 2.7208 3.2873 33 1 5.0147 4.3659 3.6384 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396312349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:50 Heat of formation + Delta-G solvation = -29.837467 kcal Electronic energy + Delta-G solvation = -17207.167215 eV Core-core repulsion = 14516.138331 eV Total energy + Delta-G solvation = -2691.028885 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65176 -38.13591 -37.24468 -35.49937 -33.59281 -31.56118 -29.64251 -27.79670 -26.78309 -25.05300 -23.27818 -22.53690 -20.94683 -19.31753 -18.89484 -17.25893 -17.02442 -16.80391 -16.20969 -15.83677 -15.30867 -15.20339 -14.85287 -14.61743 -14.30624 -14.19691 -13.86788 -13.29498 -13.11606 -12.86296 -12.70748 -12.51338 -12.35809 -12.08384 -11.89225 -11.67036 -11.56617 -11.47711 -11.09878 -10.49187 -10.08304 -9.22691 -8.98431 -8.52362 -6.48189 -0.03773 0.45098 0.82831 1.20792 1.22959 1.34401 1.39789 1.53889 2.05268 2.40786 3.04575 3.49794 3.68441 4.14702 4.22473 4.24337 4.45296 4.45974 4.52014 4.61904 4.65301 4.78482 4.85045 4.92348 5.05115 5.05350 5.13389 5.15277 5.26874 5.38161 5.43480 5.65064 5.72329 5.99175 6.16218 6.43087 6.67222 7.07750 8.09450 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028812 B = 0.006819 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.576414 B = 4104.964409 C = 4762.587617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.055 4.055 6 C -0.242 4.242 7 C -0.053 4.053 8 C -0.200 4.200 9 C 0.059 3.941 10 C -0.455 4.455 11 H 0.058 0.942 12 C 0.051 3.949 13 N -0.835 5.835 14 Si 0.957 3.043 15 H -0.247 1.247 16 H -0.271 1.271 17 H -0.257 1.257 18 C -0.021 4.021 19 O -0.340 6.340 20 C 0.035 3.965 21 S 0.064 5.936 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.117 0.883 30 H 0.297 0.703 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 -13.522 -6.353 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C -0.258 4.258 4 C -0.171 4.171 5 C -0.062 4.062 6 C -0.356 4.356 7 C -0.075 4.075 8 C -0.221 4.221 9 C 0.055 3.945 10 C -0.483 4.483 11 H 0.076 0.924 12 C -0.166 4.166 13 N -0.460 5.460 14 Si 0.779 3.221 15 H -0.172 1.172 16 H -0.197 1.197 17 H -0.181 1.181 18 C -0.069 4.069 19 O -0.256 6.256 20 C -0.059 4.059 21 S 0.325 5.675 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.161 -13.566 -7.642 15.719 hybrid contribution 0.873 1.047 1.514 2.038 sum -1.287 -12.519 -6.128 13.997 Atomic orbital electron populations 1.21768 0.93489 1.03033 1.01919 1.20292 0.96834 0.87571 1.04421 1.24200 1.04997 1.01538 0.95052 1.20820 1.04302 0.92215 0.99805 1.19526 1.00232 0.94007 0.92418 1.22267 1.17425 1.00247 0.95654 1.20099 0.97407 0.90560 0.99425 1.20799 1.09002 0.99538 0.92761 1.17954 0.91851 0.91861 0.92844 1.19182 1.19443 1.07935 1.01788 0.92363 1.26833 0.98530 0.92256 0.98936 1.69772 1.31014 1.06159 1.39062 0.85627 0.77237 0.80672 0.78519 1.17173 1.19717 1.18071 1.18508 1.14058 0.91993 0.82323 1.85843 1.36840 1.83422 1.19534 1.22952 0.88408 0.96462 0.98100 1.83183 1.72333 1.03705 1.08263 0.93275 0.92936 0.89700 0.89300 0.88792 0.84087 0.84747 0.86498 0.89183 0.87731 0.93831 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.89 71.98 0.71 -1.99 16 2 C -0.05 -1.08 6.37 29.85 0.19 -0.89 16 3 C -0.14 -4.33 5.63 24.95 0.14 -4.19 16 4 C -0.14 -5.12 10.09 23.40 0.24 -4.89 16 5 C -0.05 -2.43 6.03 -20.29 -0.12 -2.55 16 6 C -0.24 -10.09 6.50 23.24 0.15 -9.94 16 7 C -0.05 -2.23 9.98 22.25 0.22 -2.01 16 8 C -0.20 -9.44 7.07 22.36 0.16 -9.29 16 9 C 0.06 3.11 5.09 -21.30 -0.11 3.00 16 10 C -0.45 -25.57 9.15 23.33 0.21 -25.36 16 11 H 0.06 3.63 7.87 -2.92 -0.02 3.61 16 12 C 0.05 2.66 5.40 85.19 0.46 3.12 16 13 N -0.83 -44.66 13.94 21.81 0.30 -44.35 16 14 Si 0.96 41.10 24.51 68.60 1.68 42.78 16 15 H -0.25 -9.76 6.70 99.48 0.67 -9.09 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.26 -11.46 6.87 99.48 0.68 -10.77 16 18 C -0.02 -1.06 5.82 23.59 0.14 -0.92 16 19 O -0.34 -16.33 9.62 -88.36 -0.85 -17.18 16 20 C 0.04 1.38 11.13 113.37 1.26 2.64 16 21 S 0.06 2.08 23.20 -56.49 -1.31 0.77 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 28 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 29 H 0.12 5.29 4.74 -2.91 -0.01 5.27 16 30 H 0.30 14.15 8.30 -92.71 -0.77 13.38 16 31 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -61.89 292.25 4.52 -57.37 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.05 Total: 13.88 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 3.65 Total: -53.26 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.30 Total: -44.35 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.85 Total: -17.18 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.68 Total: 42.78 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.31 Total: 0.77 kcal Total: -61.89 4.52 -57.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396312349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.533 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds