Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47433 * 2 1 4 4 C 1.45458 * 122.61798 * 89.99793 * 3 2 1 5 5 C 1.41371 * 129.10461 * 0.26525 * 4 3 2 6 6 C 1.37805 * 120.90145 * 180.25672 * 5 4 3 7 7 C 1.37884 * 120.73840 * 359.43075 * 6 5 4 8 8 C 1.40443 * 119.88155 * 0.28365 * 7 6 5 9 9 C 1.40967 * 120.10467 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00218 * 204.96453 * 9 8 7 11 11 C 1.39908 * 119.99672 * 24.96698 * 9 8 7 12 12 N 1.30874 * 119.99988 * 17.88697 * 11 9 8 13 13 Si 1.86803 * 119.99852 * 197.89181 * 11 9 8 14 14 H 1.48496 * 109.47331 * 59.99856 * 13 11 9 15 15 H 1.48498 * 109.46942 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46812 * 299.99704 * 13 11 9 17 17 C 1.39411 * 111.89061 * 179.97438 * 4 3 2 18 18 S 1.75892 * 109.86238 * 359.97438 * 17 4 3 19 19 C 1.32527 * 122.62176 * 269.97935 * 3 2 1 20 20 O 1.35736 * 124.36942 * 359.97438 * 19 3 2 21 21 C 1.42900 * 117.00323 * 180.02562 * 20 19 3 22 22 H 1.08998 * 109.47261 * 300.00218 * 1 2 3 23 23 H 1.09005 * 109.47122 * 59.99717 * 1 2 3 24 24 H 1.08994 * 109.47825 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47261 * 239.99782 * 2 1 3 26 26 H 1.09002 * 109.46636 * 120.00160 * 2 1 3 27 27 H 1.07998 * 119.54818 * 359.97438 * 5 4 3 28 28 H 1.07995 * 119.63435 * 179.71874 * 6 5 4 29 29 H 1.08000 * 120.06034 * 180.25989 * 7 6 5 30 30 H 0.97005 * 119.99635 * 179.97438 * 12 11 9 31 31 H 1.09007 * 109.46619 * 60.00253 * 21 20 19 32 32 H 1.09000 * 109.47358 * 180.02562 * 21 20 19 33 33 H 1.08998 * 109.47163 * 300.00710 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2937 2.1600 1.2252 5 6 2.1507 1.7403 2.5676 6 6 2.4451 2.5917 3.6104 7 6 2.8981 3.8714 3.3691 8 6 3.0575 4.3197 2.0477 9 6 3.5198 5.6273 1.7955 10 1 3.2748 6.1165 0.8645 11 6 4.2962 6.2912 2.7515 12 7 4.8853 5.6120 3.7025 13 14 4.4918 8.1472 2.6705 14 1 3.1582 8.7909 2.7815 15 1 5.3566 8.6030 3.7884 16 1 5.1168 8.5230 1.3769 17 6 2.7509 3.4512 0.9657 18 16 2.8453 3.7140 -0.7709 19 6 2.2710 2.0942 -1.1162 20 8 2.0950 1.5937 -2.3656 21 6 2.4020 2.4592 -3.4605 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.8016 0.7404 2.7786 28 1 2.3241 2.2512 4.6281 29 1 3.1296 4.5281 4.1947 30 1 5.4238 6.0723 4.3651 31 1 3.4502 2.7537 -3.4079 32 1 2.2175 1.9369 -4.3993 33 1 1.7721 3.3472 -3.4093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396312358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = -15.489363 kcal Electronic energy + Delta-G solvation = -17110.743328 eV Core-core repulsion = 14420.336623 eV Total energy + Delta-G solvation = -2690.406704 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.85045 -37.73623 -35.11965 -33.37294 -31.15592 -29.85531 -28.16278 -26.19517 -25.44375 -23.48363 -21.42870 -20.86267 -19.13698 -17.81849 -16.82065 -15.55198 -15.50093 -15.34031 -15.13105 -14.14031 -13.64667 -13.26352 -13.23073 -12.84633 -12.61193 -12.39194 -11.76738 -11.72246 -11.50858 -11.41940 -11.17465 -11.14352 -10.73647 -10.58300 -10.48496 -10.03958 -9.84128 -9.40118 -9.35458 -9.22403 -8.09840 -7.09987 -6.88580 -6.67621 -4.45736 1.98706 2.23389 2.66291 2.99726 3.00590 3.03337 3.06058 3.46160 3.69678 3.83757 4.53289 5.28122 5.33381 5.47957 5.50339 5.57600 5.60197 5.86871 5.98854 6.18284 6.27842 6.31574 6.48197 6.54111 6.66359 6.82076 6.88325 7.06686 7.21700 7.30211 7.50840 7.61864 7.79010 7.97113 8.09632 8.46077 8.68378 8.76708 10.03575 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.007089 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.416195 B = 3948.925263 C = 4955.901284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C -0.139 4.139 4 C -0.015 4.015 5 C -0.215 4.215 6 C -0.084 4.084 7 C -0.173 4.173 8 C 0.151 3.849 9 C -0.457 4.457 10 H 0.079 0.921 11 C 0.079 3.921 12 N -0.782 5.782 13 Si 0.910 3.090 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.264 1.264 17 C -0.214 4.214 18 S 0.019 5.981 19 C 0.012 3.988 20 O -0.290 6.290 21 C 0.024 3.976 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.284 0.716 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 -3.701 -6.419 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.022 4.022 5 C -0.237 4.237 6 C -0.104 4.104 7 C -0.196 4.196 8 C 0.145 3.855 9 C -0.486 4.486 10 H 0.097 0.903 11 C -0.141 4.141 12 N -0.406 5.406 13 Si 0.734 3.266 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.188 1.188 17 C -0.328 4.328 18 S 0.279 5.721 19 C -0.146 4.146 20 O -0.204 6.204 21 C -0.073 4.073 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.964 -2.664 -7.230 8.256 hybrid contribution -0.046 -0.017 0.759 0.760 sum -3.010 -2.681 -6.471 7.624 Atomic orbital electron populations 1.21681 0.95643 1.00476 1.01975 1.19946 0.95292 0.91978 1.01577 1.19166 1.08824 0.97532 0.89742 1.18351 0.99984 0.91659 0.92169 1.20066 1.14215 0.99367 0.90053 1.20507 0.98612 0.94639 0.96605 1.21122 1.06212 0.95935 0.96339 1.16931 0.88086 0.91228 0.89225 1.19459 1.27771 0.98515 1.02837 0.90314 1.25902 0.93276 1.00916 0.93985 1.69839 1.20998 1.38006 1.11785 0.86329 0.79417 0.81899 0.79003 1.18577 1.20087 1.18831 1.22215 1.19024 0.98230 0.93363 1.83610 1.73942 1.10148 1.04354 1.22540 1.07365 0.97843 0.86843 1.85879 1.83861 1.39642 1.11024 1.23086 1.00996 0.94856 0.88341 0.92572 0.93070 0.93312 0.91895 0.91588 0.88860 0.88739 0.85827 0.90469 0.92605 0.88358 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 37.16 0.37 -1.77 16 2 C -0.05 -0.83 5.95 -27.88 -0.17 -1.00 16 3 C -0.14 -2.92 5.25 -103.66 -0.54 -3.46 16 4 C -0.02 -0.36 6.01 -105.40 -0.63 -1.00 16 5 C -0.22 -4.88 9.78 -38.55 -0.38 -5.25 16 6 C -0.08 -1.95 9.97 -39.87 -0.40 -2.35 16 7 C -0.17 -4.43 8.67 -38.88 -0.34 -4.77 16 8 C 0.15 4.02 5.59 -106.56 -0.60 3.42 16 9 C -0.46 -11.95 8.82 -37.92 -0.33 -12.29 16 10 H 0.08 2.01 7.74 -52.49 -0.41 1.61 16 11 C 0.08 1.93 5.12 -17.33 -0.09 1.84 16 12 N -0.78 -19.63 10.97 55.55 0.61 -19.02 16 13 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 14 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 15 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 17 C -0.21 -5.38 6.36 -37.67 -0.24 -5.62 16 18 S 0.02 0.42 21.45 -107.50 -2.31 -1.89 16 19 C 0.01 0.25 7.06 28.82 0.20 0.45 16 20 O -0.29 -5.07 10.03 -18.92 -0.19 -5.26 16 21 C 0.02 0.31 10.23 101.05 1.03 1.35 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 26 H 0.07 1.10 7.56 -51.93 -0.39 0.71 16 27 H 0.09 1.88 7.61 -52.49 -0.40 1.48 16 28 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 30 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 31 H 0.06 0.73 8.02 -51.93 -0.42 0.31 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 LS Contribution 293.94 15.07 4.43 4.43 Total: -1.00 -27.89 293.94 -8.61 -36.50 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.01 Total: 2.45 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -2.11 Total: -30.44 kcal Atomic # 7 Polarization: -19.63 SS G_CDS: 0.61 Total: -19.02 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.19 Total: -5.26 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.31 Total: -1.89 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.89 -8.61 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396312358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.008 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds