Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47433 * 2 1 4 4 C 1.45458 * 122.61798 * 89.99793 * 3 2 1 5 5 C 1.41371 * 129.10461 * 0.26525 * 4 3 2 6 6 C 1.37805 * 120.90145 * 180.25672 * 5 4 3 7 7 C 1.37884 * 120.73840 * 359.43075 * 6 5 4 8 8 C 1.40443 * 119.88155 * 0.28365 * 7 6 5 9 9 C 1.40967 * 120.10467 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00218 * 204.96453 * 9 8 7 11 11 C 1.39908 * 119.99672 * 24.96698 * 9 8 7 12 12 N 1.30874 * 119.99988 * 17.88697 * 11 9 8 13 13 Si 1.86803 * 119.99852 * 197.89181 * 11 9 8 14 14 H 1.48496 * 109.47331 * 59.99856 * 13 11 9 15 15 H 1.48498 * 109.46942 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46812 * 299.99704 * 13 11 9 17 17 C 1.39411 * 111.89061 * 179.97438 * 4 3 2 18 18 S 1.75892 * 109.86238 * 359.97438 * 17 4 3 19 19 C 1.32527 * 122.62176 * 269.97935 * 3 2 1 20 20 O 1.35736 * 124.36942 * 359.97438 * 19 3 2 21 21 C 1.42900 * 117.00323 * 180.02562 * 20 19 3 22 22 H 1.08998 * 109.47261 * 300.00218 * 1 2 3 23 23 H 1.09005 * 109.47122 * 59.99717 * 1 2 3 24 24 H 1.08994 * 109.47825 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47261 * 239.99782 * 2 1 3 26 26 H 1.09002 * 109.46636 * 120.00160 * 2 1 3 27 27 H 1.07998 * 119.54818 * 359.97438 * 5 4 3 28 28 H 1.07995 * 119.63435 * 179.71874 * 6 5 4 29 29 H 1.08000 * 120.06034 * 180.25989 * 7 6 5 30 30 H 0.97005 * 119.99635 * 179.97438 * 12 11 9 31 31 H 1.09007 * 109.46619 * 60.00253 * 21 20 19 32 32 H 1.09000 * 109.47358 * 180.02562 * 21 20 19 33 33 H 1.08998 * 109.47163 * 300.00710 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2937 2.1600 1.2252 5 6 2.1507 1.7403 2.5676 6 6 2.4451 2.5917 3.6104 7 6 2.8981 3.8714 3.3691 8 6 3.0575 4.3197 2.0477 9 6 3.5198 5.6273 1.7955 10 1 3.2748 6.1165 0.8645 11 6 4.2962 6.2912 2.7515 12 7 4.8853 5.6120 3.7025 13 14 4.4918 8.1472 2.6705 14 1 3.1582 8.7909 2.7815 15 1 5.3566 8.6030 3.7884 16 1 5.1168 8.5230 1.3769 17 6 2.7509 3.4512 0.9657 18 16 2.8453 3.7140 -0.7709 19 6 2.2710 2.0942 -1.1162 20 8 2.0950 1.5937 -2.3656 21 6 2.4020 2.4592 -3.4605 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.8016 0.7404 2.7786 28 1 2.3241 2.2512 4.6281 29 1 3.1296 4.5281 4.1947 30 1 5.4238 6.0723 4.3651 31 1 3.4502 2.7537 -3.4079 32 1 2.2175 1.9369 -4.3993 33 1 1.7721 3.3472 -3.4093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396312358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = -29.323501 kcal Electronic energy + Delta-G solvation = -17111.343221 eV Core-core repulsion = 14420.336623 eV Total energy + Delta-G solvation = -2691.006598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38127 -39.38317 -36.76091 -35.11488 -32.67675 -31.68221 -29.64905 -27.55599 -27.27469 -24.92605 -23.14528 -22.61804 -20.76703 -19.43553 -18.56026 -17.22516 -16.93709 -16.88226 -16.74889 -15.72373 -15.08707 -14.92977 -14.84892 -14.36594 -14.23477 -13.89765 -13.38463 -13.10282 -13.02792 -12.93705 -12.73881 -12.53293 -12.45688 -12.13984 -11.97917 -11.61604 -11.49532 -11.14763 -11.10519 -10.98043 -9.88576 -8.89427 -8.69416 -8.41299 -6.38589 0.27084 0.58889 0.84357 1.28346 1.34732 1.40320 1.47389 1.73435 2.16193 2.31562 2.69501 3.58614 4.09788 4.20025 4.28531 4.29974 4.40746 4.60377 4.62368 4.64696 4.72874 4.90140 4.94247 5.02291 5.10081 5.20249 5.32702 5.42205 5.50396 5.53078 5.82604 5.89388 6.02295 6.11755 6.24251 6.57109 6.78369 6.88014 8.23631 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.007089 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.416195 B = 3948.925263 C = 4955.901284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.045 4.045 3 C -0.158 4.158 4 C -0.027 4.027 5 C -0.216 4.216 6 C -0.086 4.086 7 C -0.201 4.201 8 C 0.122 3.878 9 C -0.490 4.490 10 H 0.072 0.928 11 C 0.041 3.959 12 N -0.812 5.812 13 Si 0.980 3.020 14 H -0.259 1.259 15 H -0.262 1.262 16 H -0.261 1.261 17 C -0.251 4.251 18 S 0.023 5.977 19 C 0.024 3.976 20 O -0.289 6.289 21 C 0.013 3.987 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.293 0.707 31 H 0.056 0.944 32 H 0.140 0.860 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.996 -4.525 -7.533 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.171 4.171 4 C -0.033 4.033 5 C -0.237 4.237 6 C -0.105 4.105 7 C -0.224 4.224 8 C 0.117 3.883 9 C -0.519 4.519 10 H 0.090 0.910 11 C -0.176 4.176 12 N -0.436 5.436 13 Si 0.800 3.200 14 H -0.183 1.183 15 H -0.186 1.186 16 H -0.185 1.185 17 C -0.366 4.366 18 S 0.283 5.717 19 C -0.135 4.135 20 O -0.204 6.204 21 C -0.082 4.082 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.158 0.842 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.465 -3.510 -8.350 9.698 hybrid contribution 0.087 0.128 0.981 0.993 sum -3.378 -3.382 -7.369 8.784 Atomic orbital electron populations 1.21633 0.94129 1.02222 1.01155 1.20022 0.96496 0.89565 1.02380 1.19436 1.09521 0.99342 0.88793 1.18820 0.99266 0.91563 0.93692 1.20432 1.13163 1.00427 0.89684 1.20814 0.97578 0.93795 0.98344 1.21134 1.08213 0.97132 0.95884 1.17286 0.88807 0.92008 0.90227 1.19640 1.29425 0.99248 1.03585 0.90976 1.26722 0.92302 1.05408 0.93187 1.69877 1.21375 1.39943 1.12420 0.85280 0.79521 0.75801 0.79389 1.18334 1.18562 1.18491 1.22580 1.19861 0.99085 0.95041 1.83378 1.74264 1.11835 1.02238 1.22614 1.06042 0.96611 0.88216 1.85889 1.83509 1.40416 1.10566 1.23471 1.01143 0.95288 0.88308 0.93759 0.93517 0.90263 0.90765 0.91040 0.86027 0.85943 0.87116 0.89635 0.92533 0.84206 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.89 71.98 0.71 -3.02 16 2 C -0.05 -1.44 5.95 29.85 0.18 -1.27 16 3 C -0.16 -6.44 5.25 -19.15 -0.10 -6.54 16 4 C -0.03 -1.26 6.01 -20.37 -0.12 -1.39 16 5 C -0.22 -9.64 9.78 22.94 0.22 -9.41 16 6 C -0.09 -3.99 9.97 22.08 0.22 -3.77 16 7 C -0.20 -10.64 8.67 22.72 0.20 -10.44 16 8 C 0.12 6.75 5.59 -21.12 -0.12 6.63 16 9 C -0.49 -26.64 8.82 23.34 0.21 -26.44 16 10 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 11 C 0.04 2.04 5.12 85.24 0.44 2.48 16 12 N -0.81 -41.80 10.97 21.82 0.24 -41.56 16 13 Si 0.98 37.82 29.60 68.60 2.03 39.85 16 14 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 15 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 17 C -0.25 -12.94 6.36 23.51 0.15 -12.79 16 18 S 0.02 1.01 21.45 -56.49 -1.21 -0.20 16 19 C 0.02 0.95 7.06 66.68 0.47 1.42 16 20 O -0.29 -9.45 10.03 -90.60 -0.91 -10.35 16 21 C 0.01 0.32 10.23 113.37 1.16 1.48 16 22 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 23 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 2.20 7.84 -2.39 -0.02 2.19 16 26 H 0.07 2.19 7.56 -2.39 -0.02 2.18 16 27 H 0.12 4.64 7.61 -2.91 -0.02 4.62 16 28 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 29 H 0.11 6.01 6.16 -2.91 -0.02 5.99 16 30 H 0.29 13.52 8.30 -92.70 -0.77 12.75 16 31 H 0.06 1.35 8.02 -2.38 -0.02 1.34 16 32 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.37 8.02 -2.39 -0.02 1.35 16 Total: -1.00 -61.61 293.94 4.88 -56.73 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.11 Total: 18.59 kcal Atomic # 6 Polarization: -66.66 SS G_CDS: 3.61 Total: -63.05 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.24 Total: -41.56 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.91 Total: -10.35 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -1.21 Total: -0.20 kcal Total: -61.61 4.88 -56.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396312358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.408 kcal (2) G-P(sol) polarization free energy of solvation -61.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds