Wall clock time and date at job start Mon Mar 30 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46642 * 2 1 4 4 C 1.37680 * 119.75846 * 264.99484 * 3 2 1 5 5 C 1.38611 * 120.11449 * 179.97438 * 4 3 2 6 6 C 1.37398 * 120.24182 * 0.02562 * 5 4 3 7 7 C 1.40808 * 120.43809 * 0.02562 * 6 5 4 8 8 C 1.46558 * 128.71290 * 179.97438 * 7 6 5 9 9 C 1.40672 * 123.23869 * 0.04356 * 8 7 6 10 10 H 1.07995 * 119.99539 * 33.81876 * 9 8 7 11 11 C 1.39563 * 120.00007 * 213.82759 * 9 8 7 12 12 N 1.31246 * 120.00057 * 20.61554 * 11 9 8 13 13 Si 1.86805 * 119.99647 * 200.61728 * 11 9 8 14 14 H 1.48498 * 109.47062 * 59.99877 * 13 11 9 15 15 H 1.48503 * 109.46790 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47207 * 299.99820 * 13 11 9 17 17 C 1.37460 * 113.52933 * 180.02562 * 8 7 6 18 18 O 1.35247 * 124.56996 * 179.97438 * 17 8 7 19 19 C 1.42893 * 117.00265 * 180.02562 * 18 17 8 20 20 S 1.75183 * 110.86371 * 0.02562 * 17 8 7 21 21 C 1.39325 * 119.06767 * 359.70346 * 7 6 5 22 22 H 1.08994 * 109.47410 * 299.99926 * 1 2 3 23 23 H 1.08998 * 109.47457 * 60.00246 * 1 2 3 24 24 H 1.09002 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47098 * 120.00156 * 2 1 3 26 26 H 1.08999 * 109.47249 * 240.00546 * 2 1 3 27 27 H 1.07998 * 119.94557 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.87796 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.77964 * 180.02562 * 6 5 4 30 30 H 0.96999 * 119.99774 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.47171 * 60.00070 * 19 18 17 32 32 H 1.09002 * 109.47523 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.47392 * 300.00235 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3583 2.0304 -1.1907 5 6 2.8204 3.3372 -1.1993 6 6 2.9562 4.0310 -0.0211 7 6 2.6286 3.4236 1.2062 8 6 2.7033 3.9876 2.5568 9 6 3.1405 5.2981 2.8221 10 1 2.9301 6.0902 2.1188 11 6 3.8463 5.5744 3.9940 12 7 4.4512 4.6051 4.6398 13 14 3.9300 7.3240 4.6432 14 1 2.5568 7.8126 4.9276 15 1 4.7330 7.3506 5.8921 16 1 4.5662 8.1995 3.6263 17 6 2.3046 3.1130 3.5396 18 8 2.2850 3.4006 4.8610 19 6 1.8403 2.3682 5.7431 20 16 1.8266 1.5753 2.8499 21 6 2.1592 2.1118 1.2083 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 2.2530 1.4898 -2.1196 28 1 3.0747 3.8118 -2.1355 29 1 3.3165 5.0490 -0.0366 30 1 4.9414 4.7972 5.4545 31 1 2.4905 1.4991 5.6422 32 1 1.8731 2.7293 6.7710 33 1 0.8179 2.0885 5.4891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:57 Heat of formation + Delta-G solvation = -21.828482 kcal Electronic energy + Delta-G solvation = -17358.169290 eV Core-core repulsion = 14667.487701 eV Total energy + Delta-G solvation = -2690.681589 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28599 -39.02507 -36.29464 -34.80139 -33.70220 -30.36665 -29.69884 -28.09634 -26.83636 -24.57076 -23.81103 -22.00708 -21.11608 -18.83085 -18.55682 -17.15274 -16.77191 -16.50198 -16.13323 -16.05973 -15.11285 -15.03911 -14.55764 -14.38861 -14.25016 -13.89748 -13.43155 -13.18909 -12.97202 -12.80191 -12.58613 -12.47376 -12.24912 -12.18864 -11.99004 -11.73583 -11.48256 -11.05614 -11.00632 -10.71068 -9.84694 -8.70657 -8.53711 -8.20095 -6.05779 0.27954 0.49142 0.96762 1.32440 1.40654 1.42197 1.49698 1.98788 2.32498 2.90456 3.04658 3.40775 3.91745 4.08315 4.30582 4.38624 4.40241 4.41651 4.53291 4.59863 4.63507 4.73811 4.75226 5.06889 5.09462 5.13566 5.31859 5.34083 5.42584 5.51181 5.71742 5.73155 5.92716 6.23290 6.53052 6.70157 7.08547 7.22565 8.58917 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.007994 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.949981 B = 3501.673292 C = 4478.906656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.060 4.060 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.069 4.069 8 C 0.010 3.990 9 C -0.479 4.479 10 H 0.067 0.933 11 C 0.040 3.960 12 N -0.809 5.809 13 Si 0.967 3.033 14 H -0.271 1.271 15 H -0.273 1.273 16 H -0.261 1.261 17 C -0.123 4.123 18 O -0.269 6.269 19 C 0.026 3.974 20 S -0.003 6.003 21 C -0.152 4.152 22 H 0.035 0.965 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.162 0.838 28 H 0.155 0.845 29 H 0.114 0.886 30 H 0.276 0.724 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -6.586 -6.914 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.066 4.066 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.077 4.077 8 C 0.001 3.999 9 C -0.512 4.512 10 H 0.085 0.915 11 C -0.174 4.174 12 N -0.436 5.436 13 Si 0.790 3.210 14 H -0.196 1.196 15 H -0.198 1.198 16 H -0.185 1.185 17 C -0.282 4.282 18 O -0.183 6.183 19 C -0.072 4.072 20 S 0.255 5.745 21 C -0.267 4.267 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.179 0.821 28 H 0.173 0.827 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.942 -7.756 -5.907 10.930 hybrid contribution 0.782 1.960 0.498 2.168 sum -4.159 -5.797 -5.409 8.953 Atomic orbital electron populations 1.21692 0.93865 1.02558 1.01717 1.20585 0.96988 0.90984 1.03275 1.19652 0.99774 0.96894 0.90252 1.21135 1.00588 0.95221 0.97167 1.21191 0.99991 0.95115 0.97416 1.21059 1.00853 1.00044 0.91034 1.19586 1.00271 0.93403 0.94471 1.17274 0.99424 0.95494 0.87728 1.18723 1.33149 0.93475 1.05887 0.91483 1.26297 0.92977 1.02063 0.96089 1.69995 1.23082 1.35596 1.14975 0.85483 0.78657 0.78732 0.78125 1.19576 1.19816 1.18534 1.22926 1.20958 0.97597 0.86680 1.85883 1.83087 1.36943 1.12368 1.23015 0.98114 0.91284 0.94751 1.82617 1.75790 1.17486 0.98598 1.22291 1.09712 0.97956 0.96727 0.94613 0.91737 0.90321 0.92464 0.88156 0.82081 0.82706 0.86780 0.91430 0.94439 0.87547 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.89 71.98 0.71 -2.66 16 2 C -0.08 -2.17 5.85 29.85 0.17 -1.99 16 3 C -0.06 -2.09 5.16 -19.63 -0.10 -2.19 16 4 C -0.12 -3.59 9.65 22.23 0.21 -3.37 16 5 C -0.12 -3.74 10.01 22.16 0.22 -3.52 16 6 C -0.11 -4.64 9.82 22.70 0.22 -4.42 16 7 C -0.07 -3.43 6.00 -20.22 -0.12 -3.55 16 8 C 0.01 0.57 5.51 -20.70 -0.11 0.45 16 9 C -0.48 -27.66 8.89 23.18 0.21 -27.46 16 10 H 0.07 3.74 7.92 -2.91 -0.02 3.72 16 11 C 0.04 2.21 4.71 85.10 0.40 2.61 16 12 N -0.81 -46.10 11.06 21.78 0.24 -45.86 16 13 Si 0.97 42.36 29.61 68.60 2.03 44.39 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 17 C -0.12 -6.70 6.64 67.64 0.45 -6.25 16 18 O -0.27 -14.34 7.75 -85.30 -0.66 -15.00 16 19 C 0.03 1.04 10.23 113.37 1.16 2.20 16 20 S 0.00 -0.13 21.16 -56.49 -1.20 -1.33 16 21 C -0.15 -6.74 6.26 22.90 0.14 -6.60 16 22 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.66 7.72 -2.39 -0.02 1.64 16 26 H 0.10 2.05 8.04 -2.39 -0.02 2.03 16 27 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 29 H 0.11 4.76 8.03 -2.91 -0.02 4.73 16 30 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.04 1.48 8.02 -2.39 -0.02 1.47 16 32 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.05 1.73 8.02 -2.39 -0.02 1.71 16 Total: -1.00 -68.11 294.26 5.09 -63.02 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.10 Total: 11.52 kcal Atomic # 6 Polarization: -60.32 SS G_CDS: 3.57 Total: -56.75 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.24 Total: -45.86 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.66 Total: -15.00 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.20 Total: -1.33 kcal Total: -68.11 5.09 -63.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.196 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds