Wall clock time and date at job start Mon Mar 30 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47389 * 2 1 4 4 C 1.37792 * 119.54966 * 265.00189 * 3 2 1 5 5 C 1.37886 * 120.76094 * 180.02562 * 4 3 2 6 6 C 1.40403 * 119.88942 * 359.97438 * 5 4 3 7 7 C 1.40931 * 120.11767 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00150 * 204.98313 * 7 6 5 9 9 C 1.39930 * 119.99735 * 25.26156 * 7 6 5 10 10 N 1.30865 * 120.00220 * 17.48162 * 9 7 6 11 11 Si 1.86797 * 119.99871 * 197.48234 * 9 7 6 12 12 H 1.48502 * 109.46999 * 59.99887 * 11 9 7 13 13 H 1.48493 * 109.47358 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47253 * 300.00061 * 11 9 7 15 15 C 1.42162 * 119.76779 * 0.24804 * 6 5 4 16 16 S 1.75891 * 130.54427 * 180.25371 * 15 6 5 17 17 C 1.75306 * 92.17518 * 179.63235 * 16 15 6 18 18 C 1.50698 * 124.33158 * 179.84277 * 17 16 15 19 19 O 1.42901 * 109.47467 * 269.97497 * 18 17 16 20 20 C 1.31864 * 111.33649 * 359.81999 * 17 16 15 21 21 C 1.39431 * 119.68843 * 359.51633 * 15 6 5 22 22 H 1.09001 * 109.46947 * 59.99953 * 1 2 3 23 23 H 1.08996 * 109.47430 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47159 * 299.99743 * 1 2 3 25 25 H 1.08995 * 109.47283 * 239.99812 * 2 1 3 26 26 H 1.09006 * 109.47342 * 120.00242 * 2 1 3 27 27 H 1.07998 * 119.61429 * 0.02562 * 4 3 2 28 28 H 1.08007 * 120.05420 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00201 * 180.02562 * 10 9 7 30 30 H 1.09003 * 109.46934 * 29.97812 * 18 17 16 31 31 H 1.09007 * 109.47094 * 149.97218 * 18 17 16 32 32 H 0.96696 * 113.99909 * 180.02562 * 19 18 17 33 33 H 1.08008 * 122.55545 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3574 2.0266 -1.1941 5 6 2.8198 3.3253 -1.2231 6 6 2.9629 4.0440 -0.0255 7 6 3.4356 5.3714 -0.0495 8 1 3.9225 5.7870 0.8203 9 6 3.2689 6.1528 -1.1983 10 7 2.3977 5.8000 -2.1088 11 14 4.2901 7.6993 -1.4321 12 1 5.7317 7.3432 -1.4465 13 1 3.9267 8.3423 -2.7204 14 1 4.0241 8.6417 -0.3156 15 6 2.6347 3.4260 1.2120 16 16 2.6985 4.0514 2.8547 17 6 2.1037 2.5438 3.5230 18 6 1.8798 2.2952 4.9924 19 8 3.0743 1.7688 5.5740 20 6 1.8769 1.6553 2.5754 21 6 2.1635 2.1137 1.2251 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.2486 1.4779 -2.1180 28 1 3.0716 3.7889 -2.1656 29 1 2.2824 6.3415 -2.9054 30 1 1.6189 3.2325 5.4838 31 1 1.0675 1.5796 5.1202 32 1 3.0026 1.5840 6.5204 33 1 1.5061 0.6629 2.7858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:08 Heat of formation + Delta-G solvation = -32.782300 kcal Electronic energy + Delta-G solvation = -16953.544704 eV Core-core repulsion = 14262.388121 eV Total energy + Delta-G solvation = -2691.156582 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.35537 -36.87409 -34.75934 -33.83320 -32.28506 -29.38984 -28.88810 -25.46463 -25.21622 -22.27111 -21.98754 -19.88047 -19.29155 -17.44144 -17.31813 -15.78225 -15.23272 -14.94479 -14.73247 -13.96253 -13.60974 -13.34209 -12.97103 -12.78703 -12.62673 -12.25076 -11.88343 -11.65947 -11.27897 -11.21197 -11.02417 -10.96402 -10.55852 -10.40973 -10.27163 -9.85323 -9.84055 -9.72368 -9.29862 -9.17067 -8.14962 -7.24791 -6.91866 -6.64923 -4.40586 1.82463 2.60198 2.66975 3.01286 3.02928 3.07328 3.25159 3.43972 3.85520 4.49104 4.65696 5.25541 5.39840 5.43856 5.54631 5.68601 5.72006 6.02319 6.06824 6.21111 6.37837 6.41065 6.51027 6.58402 6.74577 6.79397 6.91261 7.09966 7.24033 7.37675 7.60576 7.71215 7.81508 7.98317 8.10565 8.47510 8.69637 8.77325 10.04959 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.007749 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.408764 B = 3612.342070 C = 4994.046102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.179 4.179 4 C -0.082 4.082 5 C -0.168 4.168 6 C 0.143 3.857 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.078 3.922 10 N -0.783 5.783 11 Si 0.910 3.090 12 H -0.261 1.261 13 H -0.276 1.276 14 H -0.263 1.263 15 C -0.200 4.200 16 S 0.056 5.944 17 C -0.197 4.197 18 C 0.153 3.847 19 O -0.565 6.565 20 C -0.094 4.094 21 C -0.047 4.047 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.284 0.716 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.374 0.626 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -4.872 6.541 8.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.183 4.183 4 C -0.101 4.101 5 C -0.192 4.192 6 C 0.138 3.862 7 C -0.483 4.483 8 H 0.098 0.902 9 C -0.141 4.141 10 N -0.407 5.407 11 Si 0.734 3.266 12 H -0.186 1.186 13 H -0.201 1.201 14 H -0.188 1.188 15 C -0.316 4.316 16 S 0.320 5.680 17 C -0.313 4.313 18 C 0.074 3.926 19 O -0.370 6.370 20 C -0.127 4.127 21 C -0.053 4.053 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.142 0.858 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.509 -3.330 6.402 7.373 hybrid contribution -0.317 -0.616 -0.284 0.749 sum -1.827 -3.945 6.118 7.506 Atomic orbital electron populations 1.21767 0.96588 0.99738 1.01890 1.20155 0.94720 0.94401 1.00472 1.18895 1.12671 0.95521 0.91224 1.20389 0.99216 0.95354 0.95166 1.21113 1.06817 0.92985 0.98244 1.16958 0.88720 0.92392 0.88170 1.19481 1.33051 0.96367 0.99440 0.90229 1.25903 0.93664 0.99730 0.94835 1.69828 1.25292 1.37432 1.08189 0.86324 0.81135 0.80678 0.78493 1.18580 1.20123 1.18787 1.22619 1.14809 0.98114 0.96021 1.83471 1.71467 1.13475 0.99555 1.23380 1.10961 0.99930 0.97014 1.20370 0.86534 0.97152 0.88517 1.86643 1.36761 1.86637 1.27009 1.20818 1.01716 0.98677 0.91521 1.18639 1.01643 0.93162 0.91863 0.92968 0.94032 0.93098 0.92794 0.92980 0.88831 0.85816 0.90500 0.92964 0.92557 0.77992 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.89 37.16 0.37 -1.91 16 2 C -0.06 -1.07 5.83 -27.89 -0.16 -1.23 16 3 C -0.18 -3.96 5.21 -103.60 -0.54 -4.50 16 4 C -0.08 -1.89 9.58 -39.87 -0.38 -2.27 16 5 C -0.17 -4.32 8.67 -38.90 -0.34 -4.66 16 6 C 0.14 3.83 5.59 -106.56 -0.60 3.24 16 7 C -0.45 -12.00 8.82 -37.93 -0.33 -12.34 16 8 H 0.08 2.06 7.75 -52.49 -0.41 1.66 16 9 C 0.08 1.93 5.13 -17.33 -0.09 1.84 16 10 N -0.78 -19.74 10.97 55.55 0.61 -19.13 16 11 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 12 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 13 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 15 C -0.20 -5.06 6.36 -37.63 -0.24 -5.30 16 16 S 0.06 1.24 22.79 -107.50 -2.45 -1.21 16 17 C -0.20 -3.86 6.01 -36.21 -0.22 -4.08 16 18 C 0.15 2.27 7.48 36.00 0.27 2.54 16 19 O -0.57 -8.25 13.64 -35.23 -0.48 -8.73 16 20 C -0.09 -1.92 9.63 -38.61 -0.37 -2.29 16 21 C -0.05 -1.09 5.97 -105.39 -0.63 -1.72 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 26 H 0.05 0.88 7.47 -51.93 -0.39 0.50 16 27 H 0.09 1.92 8.04 -52.49 -0.42 1.49 16 28 H 0.12 3.23 6.17 -52.48 -0.32 2.90 16 29 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.37 3.17 9.12 45.56 0.42 3.58 16 33 H 0.12 2.19 7.66 -52.48 -0.40 1.79 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -29.25 295.74 -9.35 -38.59 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.19 Total: 5.28 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -3.26 Total: -32.68 kcal Atomic # 7 Polarization: -19.74 SS G_CDS: 0.61 Total: -19.13 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.48 Total: -8.73 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.45 Total: -1.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.25 -9.35 -38.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.813 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds