Wall clock time and date at job start Mon Mar 30 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47389 * 2 1 4 4 C 1.37792 * 119.54966 * 265.00189 * 3 2 1 5 5 C 1.37886 * 120.76094 * 180.02562 * 4 3 2 6 6 C 1.40403 * 119.88942 * 359.97438 * 5 4 3 7 7 C 1.40931 * 120.11767 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00150 * 204.98313 * 7 6 5 9 9 C 1.39930 * 119.99735 * 25.26156 * 7 6 5 10 10 N 1.30865 * 120.00220 * 17.48162 * 9 7 6 11 11 Si 1.86797 * 119.99871 * 197.48234 * 9 7 6 12 12 H 1.48502 * 109.46999 * 59.99887 * 11 9 7 13 13 H 1.48493 * 109.47358 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47253 * 300.00061 * 11 9 7 15 15 C 1.42162 * 119.76779 * 0.24804 * 6 5 4 16 16 S 1.75891 * 130.54427 * 180.25371 * 15 6 5 17 17 C 1.75306 * 92.17518 * 179.63235 * 16 15 6 18 18 C 1.50698 * 124.33158 * 179.84277 * 17 16 15 19 19 O 1.42901 * 109.47467 * 269.97497 * 18 17 16 20 20 C 1.31864 * 111.33649 * 359.81999 * 17 16 15 21 21 C 1.39431 * 119.68843 * 359.51633 * 15 6 5 22 22 H 1.09001 * 109.46947 * 59.99953 * 1 2 3 23 23 H 1.08996 * 109.47430 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47159 * 299.99743 * 1 2 3 25 25 H 1.08995 * 109.47283 * 239.99812 * 2 1 3 26 26 H 1.09006 * 109.47342 * 120.00242 * 2 1 3 27 27 H 1.07998 * 119.61429 * 0.02562 * 4 3 2 28 28 H 1.08007 * 120.05420 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00201 * 180.02562 * 10 9 7 30 30 H 1.09003 * 109.46934 * 29.97812 * 18 17 16 31 31 H 1.09007 * 109.47094 * 149.97218 * 18 17 16 32 32 H 0.96696 * 113.99909 * 180.02562 * 19 18 17 33 33 H 1.08008 * 122.55545 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3574 2.0266 -1.1941 5 6 2.8198 3.3253 -1.2231 6 6 2.9629 4.0440 -0.0255 7 6 3.4356 5.3714 -0.0495 8 1 3.9225 5.7870 0.8203 9 6 3.2689 6.1528 -1.1983 10 7 2.3977 5.8000 -2.1088 11 14 4.2901 7.6993 -1.4321 12 1 5.7317 7.3432 -1.4465 13 1 3.9267 8.3423 -2.7204 14 1 4.0241 8.6417 -0.3156 15 6 2.6347 3.4260 1.2120 16 16 2.6985 4.0514 2.8547 17 6 2.1037 2.5438 3.5230 18 6 1.8798 2.2952 4.9924 19 8 3.0743 1.7688 5.5740 20 6 1.8769 1.6553 2.5754 21 6 2.1635 2.1137 1.2251 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.2486 1.4779 -2.1180 28 1 3.0716 3.7889 -2.1656 29 1 2.2824 6.3415 -2.9054 30 1 1.6189 3.2325 5.4838 31 1 1.0675 1.5796 5.1202 32 1 3.0026 1.5840 6.5204 33 1 1.5061 0.6629 2.7858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:08 Heat of formation + Delta-G solvation = -50.372692 kcal Electronic energy + Delta-G solvation = -16954.307480 eV Core-core repulsion = 14262.388121 eV Total energy + Delta-G solvation = -2691.919359 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.08027 -38.09173 -36.47209 -35.38305 -33.96553 -31.06606 -30.51148 -27.19394 -26.68883 -23.88330 -23.63935 -21.60558 -20.87497 -19.26010 -18.39311 -17.54559 -16.91347 -16.45959 -16.28042 -15.54486 -15.04439 -14.77976 -14.54108 -14.38759 -14.28588 -13.73789 -13.50767 -13.23733 -12.85650 -12.81940 -12.63697 -12.49577 -12.12763 -11.96578 -11.83109 -11.56275 -11.39980 -11.07419 -10.97967 -10.92311 -9.92725 -9.04835 -8.75435 -8.44393 -6.33614 0.16353 0.83648 0.96754 1.33164 1.38991 1.45640 1.50903 1.73263 2.15922 2.67401 3.50225 3.55972 4.02959 4.22565 4.28405 4.34508 4.45857 4.50211 4.61808 4.70532 4.80081 4.95466 5.01863 5.12874 5.14018 5.14519 5.27544 5.47982 5.54154 5.56509 5.81727 5.91778 6.16763 6.24491 6.58407 6.79171 6.88535 6.94856 8.24353 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.007749 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.408764 B = 3612.342070 C = 4994.046102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 C -0.174 4.174 4 C -0.092 4.092 5 C -0.193 4.193 6 C 0.111 3.889 7 C -0.492 4.492 8 H 0.069 0.931 9 C 0.040 3.960 10 N -0.814 5.814 11 Si 0.979 3.021 12 H -0.260 1.260 13 H -0.261 1.261 14 H -0.261 1.261 15 C -0.237 4.237 16 S 0.033 5.967 17 C -0.184 4.184 18 C 0.155 3.845 19 O -0.586 6.586 20 C -0.105 4.105 21 C -0.063 4.063 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.292 0.708 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.402 0.598 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 -6.477 7.954 10.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.177 4.177 4 C -0.112 4.112 5 C -0.216 4.216 6 C 0.105 3.895 7 C -0.520 4.520 8 H 0.088 0.912 9 C -0.176 4.176 10 N -0.439 5.439 11 Si 0.799 3.201 12 H -0.185 1.185 13 H -0.185 1.185 14 H -0.185 1.185 15 C -0.352 4.352 16 S 0.297 5.703 17 C -0.300 4.300 18 C 0.076 3.924 19 O -0.396 6.396 20 C -0.136 4.136 21 C -0.070 4.070 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.253 0.747 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.211 -4.963 7.837 9.536 hybrid contribution -0.150 -0.270 -0.610 0.684 sum -2.361 -5.233 7.226 9.229 Atomic orbital electron populations 1.21704 0.94943 1.01718 1.01060 1.20233 0.95993 0.91396 1.01953 1.19469 1.10323 0.97575 0.90363 1.20682 0.98919 0.94690 0.96868 1.21115 1.08636 0.94338 0.97555 1.17302 0.89727 0.93083 0.89359 1.19620 1.34965 0.97141 1.00321 0.91237 1.26699 0.94274 1.02647 0.94008 1.69868 1.26309 1.38947 1.08792 0.85297 0.79181 0.76663 0.78943 1.18469 1.18465 1.18510 1.22975 1.15717 0.99546 0.96943 1.83403 1.72313 1.16078 0.98526 1.23983 1.08538 0.97641 0.99789 1.20471 0.87471 0.99133 0.85287 1.86554 1.36763 1.86660 1.29625 1.21018 1.02388 1.00267 0.89960 1.19192 1.01131 0.92710 0.93923 0.93995 0.90618 0.93806 0.91241 0.91570 0.86537 0.87351 0.89741 0.91416 0.89026 0.74740 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.89 71.98 0.71 -3.24 16 2 C -0.06 -1.91 5.83 29.85 0.17 -1.73 16 3 C -0.17 -7.55 5.21 -19.20 -0.10 -7.65 16 4 C -0.09 -4.32 9.58 22.08 0.21 -4.11 16 5 C -0.19 -10.40 8.67 22.71 0.20 -10.21 16 6 C 0.11 6.23 5.59 -21.12 -0.12 6.11 16 7 C -0.49 -27.43 8.82 23.34 0.21 -27.23 16 8 H 0.07 3.85 7.75 -2.91 -0.02 3.82 16 9 C 0.04 2.06 5.13 85.25 0.44 2.49 16 10 N -0.81 -42.77 10.97 21.83 0.24 -42.53 16 11 Si 0.98 38.94 29.59 68.60 2.03 40.97 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 13 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 14 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 15 C -0.24 -12.34 6.36 23.53 0.15 -12.19 16 16 S 0.03 1.49 22.79 -56.49 -1.29 0.20 16 17 C -0.18 -6.84 6.01 24.87 0.15 -6.69 16 18 C 0.16 4.02 7.48 71.24 0.53 4.55 16 19 O -0.59 -15.04 13.64 -148.98 -2.03 -17.07 16 20 C -0.10 -4.03 9.63 23.32 0.22 -3.81 16 21 C -0.06 -2.91 5.97 -20.36 -0.12 -3.03 16 22 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 26 H 0.07 2.00 7.47 -2.38 -0.02 1.98 16 27 H 0.12 4.75 8.04 -2.91 -0.02 4.73 16 28 H 0.11 6.01 6.17 -2.91 -0.02 5.99 16 29 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.40 5.21 9.12 -74.06 -0.68 4.54 16 33 H 0.16 4.91 7.66 -2.91 -0.02 4.89 16 Total: -1.00 -66.52 295.74 2.06 -64.46 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.46 Total: 20.69 kcal Atomic # 6 Polarization: -69.38 SS G_CDS: 2.65 Total: -66.72 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.24 Total: -42.53 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -2.03 Total: -17.07 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -1.29 Total: 0.20 kcal Total: -66.52 2.06 -64.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.083 kcal (2) G-P(sol) polarization free energy of solvation -66.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds