Wall clock time and date at job start Mon Mar 30 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47173 * 2 1 4 4 S 1.75252 * 124.24066 * 270.02323 * 3 2 1 5 5 C 1.75998 * 92.25389 * 180.02562 * 4 3 2 6 6 C 1.40472 * 130.26546 * 180.02562 * 5 4 3 7 7 C 1.35679 * 120.82531 * 180.02562 * 6 5 4 8 8 C 1.41152 * 120.10428 * 0.02562 * 7 6 5 9 9 C 1.41281 * 120.06025 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99477 * 334.53967 * 9 8 7 11 11 C 1.39857 * 120.00188 * 154.54014 * 9 8 7 12 12 N 1.30896 * 119.99982 * 342.46250 * 11 9 8 13 13 Si 1.86800 * 119.99832 * 162.46454 * 11 9 8 14 14 H 1.48494 * 109.47330 * 59.99895 * 13 11 9 15 15 H 1.48503 * 109.47015 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47023 * 299.99862 * 13 11 9 17 17 C 1.39906 * 119.88644 * 359.97438 * 8 7 6 18 18 C 1.40144 * 109.56373 * 359.97438 * 5 4 3 19 19 C 1.31704 * 124.24053 * 90.31063 * 3 2 1 20 20 C 1.50700 * 122.55626 * 359.75859 * 19 3 2 21 21 O 1.42900 * 109.47068 * 270.45597 * 20 19 3 22 22 H 1.08997 * 109.47045 * 60.00029 * 1 2 3 23 23 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47421 * 300.00068 * 1 2 3 25 25 H 1.08999 * 109.47507 * 239.99489 * 2 1 3 26 26 H 1.09007 * 109.46850 * 119.99899 * 2 1 3 27 27 H 1.08003 * 119.59022 * 0.02562 * 6 5 4 28 28 H 1.08001 * 119.94157 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99886 * 180.02562 * 12 11 9 30 30 H 1.07995 * 120.01216 * 180.02562 * 17 8 7 31 31 H 1.09004 * 109.47022 * 30.45849 * 20 19 3 32 32 H 1.08999 * 109.46856 * 150.45772 * 20 19 3 33 33 H 0.96701 * 113.99611 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3605 2.3507 -1.4488 5 6 2.8592 3.7577 -0.5165 6 6 3.3049 5.0192 -0.9447 7 6 3.6455 5.9778 -0.0469 8 6 3.5555 5.7157 1.3371 9 6 3.9109 6.7144 2.2711 10 1 4.6109 7.4885 1.9936 11 6 3.3562 6.7005 3.5549 12 7 2.2766 6.0000 3.7938 13 14 4.1561 7.6816 4.9286 14 1 4.1765 9.1205 4.5622 15 1 3.3804 7.5015 6.1820 16 1 5.5469 7.2032 5.1335 17 6 3.1136 4.4652 1.7825 18 6 2.7588 3.4734 0.8522 19 6 2.2849 2.1176 1.0888 20 6 2.0890 1.5571 2.4739 21 8 0.7552 1.8241 2.9115 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 3.3774 5.2286 -2.0017 28 1 3.9860 6.9429 -0.3920 29 1 1.8917 5.9906 4.6841 30 1 3.0436 4.2626 2.8410 31 1 2.2573 0.4802 2.4572 32 1 2.7966 2.0248 3.1585 33 1 0.5577 1.4904 3.7974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:56 Heat of formation + Delta-G solvation = -30.441932 kcal Electronic energy + Delta-G solvation = -17174.037794 eV Core-core repulsion = 14482.982697 eV Total energy + Delta-G solvation = -2691.055096 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.48826 -36.67649 -35.05787 -33.71531 -31.98343 -29.58795 -28.13076 -26.46038 -25.10683 -23.19964 -21.14492 -20.41148 -18.49986 -17.33385 -16.99393 -16.34196 -15.23559 -15.08815 -14.46967 -13.88068 -13.50299 -13.34551 -13.13774 -13.04288 -12.57473 -12.13193 -11.92679 -11.71887 -11.48593 -11.26018 -11.14195 -10.89460 -10.80283 -10.57922 -10.05603 -9.81454 -9.72792 -9.54070 -9.47938 -9.11700 -8.24590 -7.31014 -6.79467 -6.70933 -4.37872 1.83470 2.50645 2.67332 3.03500 3.04555 3.06086 3.11032 3.33751 3.89079 4.50468 5.00096 5.08426 5.33272 5.51851 5.54915 5.61801 5.70033 5.80565 5.96320 6.03069 6.11015 6.21615 6.42403 6.49396 6.66135 6.90592 6.91854 7.10681 7.18049 7.46877 7.52971 7.74379 7.91980 8.04282 8.12290 8.52079 8.79730 8.82749 10.14006 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.006840 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.514402 B = 4092.342825 C = 5047.101296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.149 4.149 4 S 0.002 5.998 5 C -0.230 4.230 6 C -0.066 4.066 7 C -0.181 4.181 8 C 0.106 3.894 9 C -0.459 4.459 10 H 0.080 0.920 11 C 0.075 3.925 12 N -0.785 5.785 13 Si 0.908 3.092 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.140 4.140 18 C -0.038 4.038 19 C -0.085 4.085 20 C 0.141 3.859 21 O -0.557 6.557 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.282 0.718 30 H 0.123 0.877 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 -8.561 -0.864 8.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.265 4.265 4 S 0.264 5.736 5 C -0.345 4.345 6 C -0.089 4.089 7 C -0.202 4.202 8 C 0.103 3.897 9 C -0.489 4.489 10 H 0.098 0.902 11 C -0.144 4.144 12 N -0.409 5.409 13 Si 0.732 3.268 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.188 1.188 17 C -0.162 4.162 18 C -0.043 4.043 19 C -0.099 4.099 20 C 0.061 3.939 21 O -0.362 6.362 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.141 0.859 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.170 -8.663 -2.826 9.187 hybrid contribution 0.415 0.618 2.599 2.704 sum -0.755 -8.045 -0.227 8.083 Atomic orbital electron populations 1.21774 0.94506 1.00958 1.03130 1.20073 0.96259 0.90524 1.02052 1.23352 1.07163 0.99959 0.95980 1.83216 1.74120 1.07129 1.09104 1.21777 1.19090 0.98563 0.95023 1.19642 1.00380 0.91279 0.97562 1.20762 1.07968 0.97843 0.93583 1.17415 0.89273 0.91891 0.91143 1.19490 1.23332 1.10301 0.95755 0.90211 1.25920 0.93507 0.95133 0.99855 1.69869 1.14654 1.33276 1.23114 0.86366 0.80297 0.80607 0.79483 1.18963 1.20305 1.18797 1.21106 1.05916 0.91279 0.97891 1.18855 1.00549 0.92353 0.92525 1.19343 1.02905 0.94007 0.93624 1.20572 0.84310 0.96718 0.92318 1.86651 1.30004 1.82961 1.36542 0.92693 0.92959 0.91403 0.91526 0.90850 0.88797 0.87918 0.90681 0.85897 0.93777 0.92849 0.78494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.89 37.15 0.37 -1.65 16 2 C -0.05 -0.73 6.03 -27.88 -0.17 -0.90 16 3 C -0.15 -2.85 5.62 -36.18 -0.20 -3.05 16 4 S 0.00 0.05 23.19 -107.50 -2.49 -2.44 16 5 C -0.23 -5.47 6.51 -38.03 -0.25 -5.72 16 6 C -0.07 -1.53 9.99 -39.66 -0.40 -1.93 16 7 C -0.18 -4.39 9.71 -39.39 -0.38 -4.77 16 8 C 0.11 2.82 5.55 -107.01 -0.59 2.22 16 9 C -0.46 -11.92 9.03 -37.82 -0.34 -12.26 16 10 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 11 C 0.07 1.84 5.12 -17.34 -0.09 1.75 16 12 N -0.78 -20.11 10.99 55.54 0.61 -19.50 16 13 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 14 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 15 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 16 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 17 C -0.14 -3.68 8.42 -38.09 -0.32 -4.00 16 18 C -0.04 -0.93 6.01 -105.39 -0.63 -1.56 16 19 C -0.09 -1.81 5.60 -103.58 -0.58 -2.39 16 20 C 0.14 2.50 6.88 36.01 0.25 2.75 16 21 O -0.56 -9.88 13.37 -35.23 -0.47 -10.35 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.97 6.49 -51.93 -0.34 0.64 16 27 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 30 H 0.12 3.31 5.74 -52.49 -0.30 3.01 16 31 H 0.04 0.64 6.48 -51.93 -0.34 0.31 16 32 H 0.05 0.97 7.57 -51.93 -0.39 0.58 16 33 H 0.37 4.47 9.12 45.56 0.42 4.89 16 LS Contribution 292.85 15.07 4.41 4.41 Total: -1.00 -29.39 292.85 -9.34 -38.73 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.02 Total: 7.42 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -3.34 Total: -31.50 kcal Atomic # 7 Polarization: -20.11 SS G_CDS: 0.61 Total: -19.50 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.47 Total: -10.35 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.49 Total: -2.44 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.39 -9.34 -38.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.287 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds