Wall clock time and date at job start Mon Mar 30 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47173 * 2 1 4 4 S 1.75252 * 124.24066 * 270.02323 * 3 2 1 5 5 C 1.75998 * 92.25389 * 180.02562 * 4 3 2 6 6 C 1.40472 * 130.26546 * 180.02562 * 5 4 3 7 7 C 1.35679 * 120.82531 * 180.02562 * 6 5 4 8 8 C 1.41152 * 120.10428 * 0.02562 * 7 6 5 9 9 C 1.41281 * 120.06025 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99477 * 334.53967 * 9 8 7 11 11 C 1.39857 * 120.00188 * 154.54014 * 9 8 7 12 12 N 1.30896 * 119.99982 * 342.46250 * 11 9 8 13 13 Si 1.86800 * 119.99832 * 162.46454 * 11 9 8 14 14 H 1.48494 * 109.47330 * 59.99895 * 13 11 9 15 15 H 1.48503 * 109.47015 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47023 * 299.99862 * 13 11 9 17 17 C 1.39906 * 119.88644 * 359.97438 * 8 7 6 18 18 C 1.40144 * 109.56373 * 359.97438 * 5 4 3 19 19 C 1.31704 * 124.24053 * 90.31063 * 3 2 1 20 20 C 1.50700 * 122.55626 * 359.75859 * 19 3 2 21 21 O 1.42900 * 109.47068 * 270.45597 * 20 19 3 22 22 H 1.08997 * 109.47045 * 60.00029 * 1 2 3 23 23 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47421 * 300.00068 * 1 2 3 25 25 H 1.08999 * 109.47507 * 239.99489 * 2 1 3 26 26 H 1.09007 * 109.46850 * 119.99899 * 2 1 3 27 27 H 1.08003 * 119.59022 * 0.02562 * 6 5 4 28 28 H 1.08001 * 119.94157 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99886 * 180.02562 * 12 11 9 30 30 H 1.07995 * 120.01216 * 180.02562 * 17 8 7 31 31 H 1.09004 * 109.47022 * 30.45849 * 20 19 3 32 32 H 1.08999 * 109.46856 * 150.45772 * 20 19 3 33 33 H 0.96701 * 113.99611 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3605 2.3507 -1.4488 5 6 2.8592 3.7577 -0.5165 6 6 3.3049 5.0192 -0.9447 7 6 3.6455 5.9778 -0.0469 8 6 3.5555 5.7157 1.3371 9 6 3.9109 6.7144 2.2711 10 1 4.6109 7.4885 1.9936 11 6 3.3562 6.7005 3.5549 12 7 2.2766 6.0000 3.7938 13 14 4.1561 7.6816 4.9286 14 1 4.1765 9.1205 4.5622 15 1 3.3804 7.5015 6.1820 16 1 5.5469 7.2032 5.1335 17 6 3.1136 4.4652 1.7825 18 6 2.7588 3.4734 0.8522 19 6 2.2849 2.1176 1.0888 20 6 2.0890 1.5571 2.4739 21 8 0.7552 1.8241 2.9115 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 3.3774 5.2286 -2.0017 28 1 3.9860 6.9429 -0.3920 29 1 1.8917 5.9906 4.6841 30 1 3.0436 4.2626 2.8410 31 1 2.2573 0.4802 2.4572 32 1 2.7966 2.0248 3.1585 33 1 0.5577 1.4904 3.7974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:55 Heat of formation + Delta-G solvation = -48.048940 kcal Electronic energy + Delta-G solvation = -17174.801291 eV Core-core repulsion = 14482.982697 eV Total energy + Delta-G solvation = -2691.818594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.16963 -38.24960 -36.52287 -35.46424 -33.47650 -31.44791 -29.77080 -28.05663 -26.78683 -24.61486 -22.95994 -22.05849 -20.11694 -19.10172 -18.35012 -18.06343 -16.95496 -16.65439 -16.03857 -15.43193 -15.10208 -14.75732 -14.66284 -14.50826 -14.28888 -13.77284 -13.41016 -13.32467 -13.00837 -12.87263 -12.71359 -12.41972 -12.22090 -12.05739 -11.62354 -11.50049 -11.45362 -11.27640 -10.91107 -10.86205 -10.04342 -9.11131 -8.63764 -8.43402 -6.32324 0.15779 0.83337 0.91857 1.31989 1.38150 1.44574 1.50746 1.61285 2.19959 2.65786 3.57956 3.71796 3.76695 4.15077 4.20966 4.28739 4.34675 4.46391 4.53822 4.63026 4.70000 4.99312 5.01679 5.04134 5.08743 5.21471 5.25582 5.40739 5.49960 5.61228 5.67552 5.88605 6.03333 6.21713 6.60404 6.87408 6.91913 6.95773 8.31738 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.006840 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.514402 B = 4092.342825 C = 5047.101296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.133 4.133 4 S 0.041 5.959 5 C -0.261 4.261 6 C -0.068 4.068 7 C -0.197 4.197 8 C 0.077 3.923 9 C -0.493 4.493 10 H 0.082 0.918 11 C 0.034 3.966 12 N -0.818 5.818 13 Si 0.984 3.016 14 H -0.258 1.258 15 H -0.268 1.268 16 H -0.260 1.260 17 C -0.169 4.169 18 C -0.054 4.054 19 C -0.124 4.124 20 C 0.147 3.853 21 O -0.578 6.578 22 H 0.046 0.954 23 H 0.086 0.914 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.288 0.712 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 -10.293 -1.125 10.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.248 4.248 4 S 0.303 5.697 5 C -0.374 4.374 6 C -0.090 4.090 7 C -0.218 4.218 8 C 0.073 3.927 9 C -0.522 4.522 10 H 0.101 0.899 11 C -0.182 4.182 12 N -0.444 5.444 13 Si 0.804 3.196 14 H -0.182 1.182 15 H -0.193 1.193 16 H -0.184 1.184 17 C -0.191 4.191 18 C -0.059 4.059 19 C -0.137 4.137 20 C 0.068 3.932 21 O -0.386 6.386 22 H 0.065 0.935 23 H 0.105 0.895 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.434 -10.403 -3.092 10.947 hybrid contribution 0.422 1.031 2.546 2.779 sum -1.012 -9.372 -0.545 9.443 Atomic orbital electron populations 1.21738 0.93567 1.02814 1.01805 1.20304 0.96856 0.87616 1.04215 1.24008 1.04353 1.01664 0.94781 1.82966 1.73234 1.04853 1.08615 1.22284 1.18964 1.00269 0.95932 1.19979 0.99211 0.91003 0.98809 1.20983 1.08641 0.99004 0.93186 1.17815 0.89990 0.92404 0.92454 1.19780 1.24405 1.10908 0.97155 0.89947 1.26800 0.93519 0.96033 1.01815 1.69946 1.15842 1.34597 1.23966 0.85231 0.79165 0.79022 0.76176 1.18232 1.19252 1.18397 1.21022 1.08358 0.92249 0.97488 1.19326 0.99886 0.93861 0.92871 1.19598 1.04925 0.93067 0.96135 1.20522 0.83939 0.98469 0.90266 1.86582 1.29883 1.83672 1.38496 0.93530 0.89542 0.93240 0.89303 0.88695 0.85993 0.86554 0.90108 0.87668 0.89848 0.94534 0.75864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.89 71.98 0.71 -2.69 16 2 C -0.05 -1.30 6.03 29.85 0.18 -1.12 16 3 C -0.13 -4.78 5.62 25.00 0.14 -4.64 16 4 S 0.04 1.57 23.19 -56.49 -1.31 0.26 16 5 C -0.26 -12.41 6.51 23.28 0.15 -12.26 16 6 C -0.07 -3.17 9.99 22.22 0.22 -2.95 16 7 C -0.20 -9.89 9.71 22.39 0.22 -9.68 16 8 C 0.08 4.27 5.55 -21.41 -0.12 4.15 16 9 C -0.49 -26.66 9.03 23.41 0.21 -26.45 16 10 H 0.08 4.22 7.90 -2.91 -0.02 4.19 16 11 C 0.03 1.72 5.12 85.22 0.44 2.16 16 12 N -0.82 -43.53 10.99 21.81 0.24 -43.29 16 13 Si 0.98 38.00 29.59 68.60 2.03 40.03 16 14 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 15 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 16 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 17 C -0.17 -9.35 8.42 23.23 0.20 -9.16 16 18 C -0.05 -2.71 6.01 -20.37 -0.12 -2.84 16 19 C -0.12 -5.22 5.60 -18.66 -0.10 -5.32 16 20 C 0.15 5.15 6.88 71.24 0.49 5.64 16 21 O -0.58 -20.13 13.37 -148.98 -1.99 -22.12 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.05 1.39 7.87 -2.38 -0.02 1.37 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.09 2.07 6.49 -2.38 -0.02 2.06 16 27 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 28 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 29 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 30 H 0.11 6.04 5.74 -2.91 -0.02 6.03 16 31 H 0.08 2.20 6.48 -2.39 -0.02 2.19 16 32 H 0.04 1.37 7.57 -2.39 -0.02 1.35 16 33 H 0.39 9.09 9.12 -74.06 -0.68 8.41 16 Total: -1.00 -66.02 292.85 2.04 -63.98 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.46 Total: 26.28 kcal Atomic # 6 Polarization: -67.76 SS G_CDS: 2.61 Total: -65.15 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.24 Total: -43.29 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.99 Total: -22.12 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.31 Total: 0.26 kcal Total: -66.02 2.04 -63.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.932 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds