Wall clock time and date at job start Mon Mar 30 2020 06:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46992 * 2 1 4 4 C 1.35689 * 119.58586 * 264.97472 * 3 2 1 5 5 C 1.41119 * 120.10997 * 179.97438 * 4 3 2 6 6 C 1.41244 * 120.06581 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99590 * 334.55079 * 6 5 4 8 8 C 1.39834 * 120.00386 * 154.55551 * 6 5 4 9 9 N 1.30914 * 119.99932 * 342.41195 * 8 6 5 10 10 Si 1.86800 * 120.00183 * 162.42010 * 8 6 5 11 11 H 1.48506 * 109.47424 * 59.99412 * 10 8 6 12 12 H 1.48502 * 109.47374 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46836 * 299.99507 * 10 8 6 14 14 C 1.39988 * 119.87099 * 0.05278 * 5 4 3 15 15 C 1.40424 * 119.99000 * 359.96692 * 14 5 4 16 16 C 1.45798 * 129.18456 * 180.02562 * 15 14 5 17 17 O 1.36172 * 122.60957 * 359.95905 * 16 15 14 18 18 C 1.42897 * 117.00436 * 179.97438 * 17 16 15 19 19 C 1.31971 * 114.78668 * 179.97438 * 16 15 14 20 20 S 1.75246 * 111.52312 * 0.02562 * 19 16 15 21 21 C 1.40202 * 119.05169 * 359.97438 * 15 14 5 22 22 H 1.09000 * 109.46534 * 60.00352 * 1 2 3 23 23 H 1.09006 * 109.46931 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47285 * 300.00244 * 1 2 3 25 25 H 1.08994 * 109.47713 * 239.99453 * 2 1 3 26 26 H 1.09007 * 109.46858 * 119.99760 * 2 1 3 27 27 H 1.08000 * 119.94618 * 0.04299 * 4 3 2 28 28 H 0.97002 * 119.99932 * 180.02562 * 9 8 6 29 29 H 1.08001 * 120.00389 * 180.24288 * 14 5 4 30 30 H 1.08998 * 109.47649 * 179.97438 * 18 17 16 31 31 H 1.09003 * 109.47453 * 300.00584 * 18 17 16 32 32 H 1.09008 * 109.46823 * 59.99873 * 18 17 16 33 33 H 1.07994 * 124.23905 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3531 2.0180 -1.1754 5 6 2.8240 3.3482 -1.1883 6 6 3.1570 3.9691 -2.4125 7 1 3.4516 3.3682 -3.2602 8 6 3.1056 5.3618 -2.5269 9 7 2.4369 6.0664 -1.6492 10 14 3.9907 6.2169 -3.9322 11 1 3.4500 5.7303 -5.2269 12 1 3.7832 7.6837 -3.8284 13 1 5.4431 5.9165 -3.8581 14 6 2.9609 4.0511 0.0145 15 6 2.6291 3.4323 1.2307 16 6 2.6927 3.9691 2.5848 17 8 3.1159 5.2353 2.8531 18 6 3.1298 5.6378 4.2242 19 6 2.3086 3.1323 3.5302 20 16 1.8247 1.5860 2.8625 21 6 2.1623 2.1104 1.2169 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 2.2467 1.4747 -2.1028 28 1 2.4009 7.0325 -1.7288 29 1 3.3173 5.0705 0.0068 30 1 3.4870 6.6650 4.2977 31 1 2.1210 5.5735 4.6320 32 1 3.7924 4.9817 4.7888 33 1 2.2942 3.3706 4.5835 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:47 Heat of formation + Delta-G solvation = -15.893799 kcal Electronic energy + Delta-G solvation = -17150.980432 eV Core-core repulsion = 14460.556190 eV Total energy + Delta-G solvation = -2690.424242 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.12809 -37.68394 -34.34051 -33.84956 -31.71733 -28.72614 -28.20571 -27.11945 -25.38221 -23.03544 -21.85426 -20.35261 -19.62189 -16.94629 -16.64090 -16.25448 -15.26263 -15.21955 -15.00490 -14.30808 -13.74175 -13.48311 -13.02870 -12.80457 -12.58304 -12.08958 -11.86518 -11.61124 -11.46419 -11.29003 -11.13090 -10.95506 -10.80793 -10.64499 -10.39018 -10.24533 -9.84999 -9.67246 -9.43213 -9.04422 -7.96189 -7.45460 -6.81868 -6.50517 -4.37579 1.90399 2.58892 2.64020 3.04545 3.05606 3.07914 3.10376 3.42510 3.86809 3.89278 4.49096 5.33196 5.40149 5.42124 5.45593 5.59603 5.61634 5.70009 5.96099 6.12172 6.23310 6.25541 6.34230 6.47701 6.69069 6.73459 6.82650 6.95835 7.13752 7.32254 7.53173 7.62074 7.82633 8.00251 8.10308 8.48599 8.77715 8.79799 10.12777 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.008243 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.158966 B = 3396.147152 C = 4894.980701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.034 4.034 4 C -0.173 4.173 5 C 0.105 3.895 6 C -0.457 4.457 7 H 0.081 0.919 8 C 0.074 3.926 9 N -0.785 5.785 10 Si 0.910 3.090 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.263 1.263 14 C -0.124 4.124 15 C -0.054 4.054 16 C 0.140 3.860 17 O -0.302 6.302 18 C 0.031 3.969 19 C -0.327 4.327 20 S 0.015 5.985 21 C -0.209 4.209 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.283 0.717 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -2.995 5.753 6.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.039 4.039 4 C -0.193 4.193 5 C 0.102 3.898 6 C -0.486 4.486 7 H 0.099 0.901 8 C -0.145 4.145 9 N -0.410 5.410 10 Si 0.734 3.266 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.187 1.187 14 C -0.147 4.147 15 C -0.059 4.059 16 C 0.084 3.916 17 O -0.215 6.215 18 C -0.065 4.065 19 C -0.461 4.461 20 S 0.271 5.729 21 C -0.323 4.323 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.829 -3.851 6.371 7.490 hybrid contribution 0.759 1.874 -0.728 2.149 sum -0.070 -1.977 5.642 5.979 Atomic orbital electron populations 1.21704 0.95501 1.00451 1.02393 1.20469 0.95777 0.94038 1.01437 1.18434 1.00309 0.94239 0.90902 1.20659 1.06247 0.97205 0.95233 1.17395 0.88809 0.90679 0.92956 1.19480 1.40146 0.91443 0.97557 0.90070 1.25924 0.93250 0.97933 0.97344 1.69843 1.29276 1.08454 1.33420 0.86342 0.80920 0.78111 0.81253 1.18943 1.20274 1.18742 1.21215 1.04147 1.00758 0.88544 1.18347 1.04224 0.92842 0.90516 1.18968 0.95852 0.83740 0.93083 1.86140 1.81303 1.27373 1.26686 1.22940 1.01049 1.00617 0.81875 1.24217 1.19996 1.00217 1.01628 1.83066 1.76310 1.14103 0.99455 1.21450 1.18378 0.97467 0.94969 0.92585 0.93407 0.92564 0.91720 0.92213 0.87778 0.90552 0.85445 0.88791 0.93251 0.93312 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 37.16 0.37 -1.93 16 2 C -0.08 -1.41 5.86 -27.88 -0.16 -1.57 16 3 C -0.03 -0.75 5.12 -104.69 -0.54 -1.29 16 4 C -0.17 -4.06 9.29 -39.40 -0.37 -4.43 16 5 C 0.11 2.75 5.55 -107.01 -0.59 2.16 16 6 C -0.46 -11.74 9.03 -37.84 -0.34 -12.08 16 7 H 0.08 1.97 7.90 -52.48 -0.41 1.55 16 8 C 0.07 1.83 5.12 -17.35 -0.09 1.74 16 9 N -0.79 -20.22 10.99 55.54 0.61 -19.61 16 10 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 11 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 14 C -0.12 -3.31 8.74 -38.10 -0.33 -3.64 16 15 C -0.05 -1.34 6.04 -105.32 -0.64 -1.97 16 16 C 0.14 3.11 6.85 -38.48 -0.26 2.84 16 17 O -0.30 -6.22 10.57 -20.29 -0.21 -6.43 16 18 C 0.03 0.44 9.92 101.05 1.00 1.44 16 19 C -0.33 -6.38 9.92 28.82 0.29 -6.10 16 20 S 0.02 0.30 22.62 -107.50 -2.43 -2.13 16 21 C -0.21 -4.80 6.33 -38.00 -0.24 -5.04 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 26 H 0.06 1.02 7.76 -51.92 -0.40 0.61 16 27 H 0.10 2.25 8.03 -52.49 -0.42 1.82 16 28 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 29 H 0.13 3.55 6.17 -52.49 -0.32 3.23 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.64 7.83 -51.93 -0.41 0.24 16 32 H 0.05 0.62 7.83 -51.92 -0.41 0.21 16 33 H 0.15 2.41 6.88 -52.49 -0.36 2.05 16 LS Contribution 294.05 15.07 4.43 4.43 Total: -1.00 -27.98 294.05 -8.52 -36.50 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.98 Total: 3.80 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -1.91 Total: -29.86 kcal Atomic # 7 Polarization: -20.22 SS G_CDS: 0.61 Total: -19.61 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.21 Total: -6.43 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.43 Total: -2.13 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.98 -8.52 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.603 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds