Wall clock time and date at job start Mon Mar 30 2020 06:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46992 * 2 1 4 4 C 1.35689 * 119.58586 * 264.97472 * 3 2 1 5 5 C 1.41119 * 120.10997 * 179.97438 * 4 3 2 6 6 C 1.41244 * 120.06581 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99590 * 334.55079 * 6 5 4 8 8 C 1.39834 * 120.00386 * 154.55551 * 6 5 4 9 9 N 1.30914 * 119.99932 * 342.41195 * 8 6 5 10 10 Si 1.86800 * 120.00183 * 162.42010 * 8 6 5 11 11 H 1.48506 * 109.47424 * 59.99412 * 10 8 6 12 12 H 1.48502 * 109.47374 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46836 * 299.99507 * 10 8 6 14 14 C 1.39988 * 119.87099 * 0.05278 * 5 4 3 15 15 C 1.40424 * 119.99000 * 359.96692 * 14 5 4 16 16 C 1.45798 * 129.18456 * 180.02562 * 15 14 5 17 17 O 1.36172 * 122.60957 * 359.95905 * 16 15 14 18 18 C 1.42897 * 117.00436 * 179.97438 * 17 16 15 19 19 C 1.31971 * 114.78668 * 179.97438 * 16 15 14 20 20 S 1.75246 * 111.52312 * 0.02562 * 19 16 15 21 21 C 1.40202 * 119.05169 * 359.97438 * 15 14 5 22 22 H 1.09000 * 109.46534 * 60.00352 * 1 2 3 23 23 H 1.09006 * 109.46931 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47285 * 300.00244 * 1 2 3 25 25 H 1.08994 * 109.47713 * 239.99453 * 2 1 3 26 26 H 1.09007 * 109.46858 * 119.99760 * 2 1 3 27 27 H 1.08000 * 119.94618 * 0.04299 * 4 3 2 28 28 H 0.97002 * 119.99932 * 180.02562 * 9 8 6 29 29 H 1.08001 * 120.00389 * 180.24288 * 14 5 4 30 30 H 1.08998 * 109.47649 * 179.97438 * 18 17 16 31 31 H 1.09003 * 109.47453 * 300.00584 * 18 17 16 32 32 H 1.09008 * 109.46823 * 59.99873 * 18 17 16 33 33 H 1.07994 * 124.23905 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3531 2.0180 -1.1754 5 6 2.8240 3.3482 -1.1883 6 6 3.1570 3.9691 -2.4125 7 1 3.4516 3.3682 -3.2602 8 6 3.1056 5.3618 -2.5269 9 7 2.4369 6.0664 -1.6492 10 14 3.9907 6.2169 -3.9322 11 1 3.4500 5.7303 -5.2269 12 1 3.7832 7.6837 -3.8284 13 1 5.4431 5.9165 -3.8581 14 6 2.9609 4.0511 0.0145 15 6 2.6291 3.4323 1.2307 16 6 2.6927 3.9691 2.5848 17 8 3.1159 5.2353 2.8531 18 6 3.1298 5.6378 4.2242 19 6 2.3086 3.1323 3.5302 20 16 1.8247 1.5860 2.8625 21 6 2.1623 2.1104 1.2169 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 2.2467 1.4747 -2.1028 28 1 2.4009 7.0325 -1.7288 29 1 3.3173 5.0705 0.0068 30 1 3.4870 6.6650 4.2977 31 1 2.1210 5.5735 4.6320 32 1 3.7924 4.9817 4.7888 33 1 2.2942 3.3706 4.5835 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:47 Heat of formation + Delta-G solvation = -30.398419 kcal Electronic energy + Delta-G solvation = -17151.609399 eV Core-core repulsion = 14460.556190 eV Total energy + Delta-G solvation = -2691.053210 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72052 -39.34045 -36.11948 -35.42980 -33.42971 -30.43829 -29.84121 -28.37808 -27.23599 -24.55417 -23.54328 -22.07156 -21.22056 -18.77105 -18.34110 -17.79603 -16.92971 -16.64940 -16.63012 -15.94294 -15.29071 -15.05911 -14.56462 -14.34136 -14.21424 -13.65640 -13.30833 -13.27844 -12.92627 -12.87479 -12.81556 -12.45966 -12.31521 -12.11774 -11.88565 -11.82554 -11.61577 -11.35898 -11.15173 -10.81752 -9.70657 -9.25752 -8.65416 -8.16358 -6.30141 0.16337 0.83178 0.98712 1.36336 1.37992 1.45512 1.50811 1.69536 2.19708 2.48451 2.65412 3.58640 3.87402 4.08013 4.24255 4.26066 4.36300 4.56428 4.59169 4.63209 4.67373 4.80355 4.95119 4.99251 5.02471 5.09707 5.20403 5.32510 5.42060 5.51345 5.71670 5.82300 5.99781 6.20522 6.44871 6.60814 6.87095 6.92520 8.31390 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.008243 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.158966 B = 3396.147152 C = 4894.980701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.034 4.034 4 C -0.186 4.186 5 C 0.079 3.921 6 C -0.491 4.491 7 H 0.086 0.914 8 C 0.032 3.968 9 N -0.822 5.822 10 Si 0.983 3.017 11 H -0.254 1.254 12 H -0.270 1.270 13 H -0.261 1.261 14 C -0.162 4.162 15 C -0.077 4.077 16 C 0.110 3.890 17 O -0.333 6.333 18 C 0.021 3.979 19 C -0.311 4.311 20 S 0.073 5.927 21 C -0.230 4.230 22 H 0.046 0.954 23 H 0.082 0.918 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.287 0.713 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 -4.338 6.918 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.038 4.038 4 C -0.207 4.207 5 C 0.076 3.924 6 C -0.521 4.521 7 H 0.104 0.896 8 C -0.183 4.183 9 N -0.448 5.448 10 Si 0.803 3.197 11 H -0.178 1.178 12 H -0.195 1.195 13 H -0.185 1.185 14 C -0.185 4.185 15 C -0.083 4.083 16 C 0.053 3.947 17 O -0.248 6.248 18 C -0.073 4.073 19 C -0.444 4.444 20 S 0.330 5.670 21 C -0.344 4.344 22 H 0.065 0.935 23 H 0.101 0.899 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.178 -5.218 7.555 9.257 hybrid contribution 0.816 2.205 -0.884 2.511 sum -0.362 -3.013 6.671 7.329 Atomic orbital electron populations 1.21673 0.94019 1.02457 1.01452 1.20552 0.96917 0.91130 1.02891 1.18940 0.98527 0.96288 0.90061 1.20881 1.06566 0.96554 0.96713 1.17755 0.89411 0.92081 0.93167 1.19782 1.41843 0.92597 0.97854 0.89627 1.26818 0.93328 0.98206 0.99949 1.69938 1.30620 1.08818 1.35421 0.85240 0.79370 0.77054 0.78012 1.17800 1.19486 1.18527 1.21032 1.07280 1.00164 0.89993 1.18804 1.03841 0.94049 0.91566 1.18912 0.98191 0.85178 0.92430 1.86094 1.81451 1.26788 1.30417 1.23323 1.02518 1.02262 0.79221 1.24692 1.17167 0.99548 1.03026 1.82763 1.75117 1.13268 0.95895 1.21972 1.17498 0.97254 0.97673 0.93480 0.89912 0.93591 0.89971 0.91039 0.86417 0.90197 0.88210 0.86482 0.91837 0.91541 0.79612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.89 71.98 0.71 -3.38 16 2 C -0.08 -2.56 5.86 29.85 0.17 -2.39 16 3 C -0.03 -1.47 5.12 -19.91 -0.10 -1.58 16 4 C -0.19 -9.00 9.29 22.39 0.21 -8.79 16 5 C 0.08 4.37 5.55 -21.41 -0.12 4.25 16 6 C -0.49 -26.50 9.03 23.40 0.21 -26.29 16 7 H 0.09 4.33 7.90 -2.91 -0.02 4.31 16 8 C 0.03 1.66 5.12 85.22 0.44 2.09 16 9 N -0.82 -44.68 10.99 21.81 0.24 -44.44 16 10 Si 0.98 38.62 29.59 68.60 2.03 40.65 16 11 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 12 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 13 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 14 C -0.16 -9.17 8.74 23.23 0.20 -8.97 16 15 C -0.08 -3.92 6.04 -20.31 -0.12 -4.04 16 16 C 0.11 4.85 6.85 23.34 0.16 5.01 16 17 O -0.33 -13.87 10.57 -95.51 -1.01 -14.87 16 18 C 0.02 0.56 9.92 113.37 1.12 1.68 16 19 C -0.31 -11.40 9.92 66.93 0.66 -10.73 16 20 S 0.07 2.68 22.62 -56.49 -1.28 1.40 16 21 C -0.23 -10.52 6.33 23.29 0.15 -10.38 16 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.08 1.87 8.14 -2.38 -0.02 1.86 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 2.44 8.01 -2.39 -0.02 2.42 16 26 H 0.07 2.20 7.76 -2.38 -0.02 2.18 16 27 H 0.12 5.16 8.03 -2.91 -0.02 5.13 16 28 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 29 H 0.10 6.04 6.17 -2.91 -0.02 6.02 16 30 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 1.50 7.83 -2.39 -0.02 1.48 16 32 H 0.07 1.52 7.83 -2.38 -0.02 1.50 16 33 H 0.19 5.27 6.88 -2.91 -0.02 5.25 16 Total: -1.00 -64.13 294.05 4.80 -59.33 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 1.11 Total: 21.42 kcal Atomic # 6 Polarization: -67.19 SS G_CDS: 3.70 Total: -63.49 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.24 Total: -44.44 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.01 Total: -14.87 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.28 Total: 1.40 kcal Total: -64.13 4.80 -59.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.935 kcal (2) G-P(sol) polarization free energy of solvation -64.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds