Wall clock time and date at job start Mon Mar 30 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47047 * 2 1 4 4 C 1.37833 * 119.21438 * 264.72474 * 3 2 1 5 5 C 1.38312 * 121.01584 * 180.31752 * 4 3 2 6 6 O 1.35719 * 120.01595 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99916 * 359.93692 * 6 5 4 8 8 C 1.40915 * 119.96405 * 359.94024 * 5 4 3 9 9 C 1.40412 * 120.42345 * 180.02562 * 8 5 4 10 10 H 1.08005 * 119.99995 * 39.58713 * 9 8 5 11 11 C 1.39963 * 119.99856 * 219.57966 * 9 8 5 12 12 N 1.30894 * 120.00315 * 19.99512 * 11 9 8 13 13 Si 1.86811 * 120.00236 * 199.99071 * 11 9 8 14 14 H 1.48498 * 109.46862 * 60.00189 * 13 11 9 15 15 H 1.48494 * 109.47155 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46822 * 300.00360 * 13 11 9 17 17 C 1.47852 * 119.14490 * 0.04051 * 8 5 4 18 18 C 1.40097 * 129.15487 * 180.02562 * 17 8 5 19 19 C 1.32628 * 115.79865 * 180.02562 * 18 17 8 20 20 S 1.75504 * 110.66506 * 359.97438 * 19 18 17 21 21 C 1.39589 * 118.13336 * 359.97438 * 17 8 5 22 22 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47555 * 300.00198 * 1 2 3 24 24 H 1.09001 * 109.47144 * 60.00641 * 1 2 3 25 25 H 1.08994 * 109.47555 * 239.99802 * 2 1 3 26 26 H 1.09001 * 109.47144 * 119.99359 * 2 1 3 27 27 H 1.07996 * 119.48937 * 0.25613 * 4 3 2 28 28 H 1.09002 * 109.46910 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.46976 * 299.99631 * 7 6 5 30 30 H 1.08999 * 109.47329 * 59.99898 * 7 6 5 31 31 H 0.97002 * 120.00350 * 179.97438 * 12 11 9 32 32 H 1.08008 * 122.10089 * 359.97438 * 18 17 8 33 33 H 1.08007 * 124.67193 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0182 -1.1979 5 6 2.8315 3.3181 -1.2406 6 8 3.1484 3.8866 -2.4315 7 6 2.9726 3.0841 -3.6007 8 6 2.9802 4.0524 -0.0471 9 6 3.4567 5.3728 -0.0793 10 1 3.1366 6.0434 -0.8631 11 6 4.3463 5.8199 0.9044 12 7 5.0348 4.9555 1.6059 13 14 4.5511 7.6503 1.2163 14 1 3.2464 8.2325 1.6213 15 1 5.5448 7.8597 2.2998 16 1 5.0254 8.3138 -0.0247 17 6 2.6282 3.4144 1.2394 18 6 2.6926 3.9424 2.5355 19 6 2.3083 3.1288 3.5099 20 16 1.8145 1.5749 2.8608 21 6 2.1589 2.0999 1.2156 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2498 1.4624 -2.1172 28 1 3.2621 3.6571 -4.4816 29 1 3.5956 2.1928 -3.5267 30 1 1.9264 2.7901 -3.6857 31 1 5.6517 5.2653 2.2874 32 1 3.0344 4.9485 2.7291 33 1 2.2997 3.3873 4.5586 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:04 Heat of formation + Delta-G solvation = -7.485383 kcal Electronic energy + Delta-G solvation = -17551.944398 eV Core-core repulsion = 14861.884772 eV Total energy + Delta-G solvation = -2690.059626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.86891 -36.95883 -34.85870 -33.55228 -31.77501 -29.21135 -27.71305 -26.58367 -25.16014 -22.62713 -22.12291 -20.30249 -19.01885 -17.84738 -16.17615 -15.70320 -15.60466 -14.82405 -14.63552 -14.11376 -13.68754 -13.43405 -13.19722 -12.61672 -12.45970 -11.98394 -11.85365 -11.49120 -11.42755 -11.27229 -11.11150 -10.89944 -10.77592 -10.52416 -10.44950 -10.33770 -9.94791 -9.37753 -9.27925 -8.98172 -7.90349 -7.06462 -7.00249 -6.38553 -4.34786 1.93472 2.62534 2.77794 3.01854 3.03210 3.08295 3.17939 3.68612 3.85334 4.41243 4.48448 5.27192 5.58516 5.63397 5.74832 5.79409 5.90158 5.99331 6.03810 6.11403 6.27544 6.32912 6.38113 6.65163 6.69605 6.74440 6.93745 6.97662 7.11960 7.28669 7.44599 7.66093 7.77576 7.95679 8.15896 8.44652 8.61487 8.91824 10.03745 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.009852 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.157991 B = 2841.365676 C = 4244.879516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.158 4.158 4 C -0.132 4.132 5 C -0.001 4.001 6 O -0.309 6.309 7 C 0.035 3.965 8 C 0.152 3.848 9 C -0.439 4.439 10 H 0.090 0.910 11 C 0.077 3.923 12 N -0.772 5.772 13 Si 0.903 3.097 14 H -0.260 1.260 15 H -0.276 1.276 16 H -0.262 1.262 17 C -0.121 4.121 18 C -0.027 4.027 19 C -0.272 4.272 20 S -0.008 6.008 21 C -0.089 4.089 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.286 0.714 32 H 0.126 0.874 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 -3.197 -1.699 5.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.165 4.165 4 C -0.153 4.153 5 C -0.047 4.047 6 O -0.224 6.224 7 C -0.061 4.061 8 C 0.147 3.853 9 C -0.467 4.467 10 H 0.108 0.892 11 C -0.143 4.143 12 N -0.395 5.395 13 Si 0.726 3.274 14 H -0.185 1.185 15 H -0.201 1.201 16 H -0.187 1.187 17 C -0.129 4.129 18 C -0.056 4.056 19 C -0.404 4.404 20 S 0.251 5.749 21 C -0.204 4.204 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.792 -4.297 -0.791 5.786 hybrid contribution 0.795 1.784 -0.456 2.006 sum -2.997 -2.513 -1.248 4.106 Atomic orbital electron populations 1.21745 0.96289 1.00046 1.01968 1.20213 0.95030 0.94035 1.00759 1.18034 1.12571 0.95713 0.90229 1.20324 1.03819 0.94706 0.96428 1.18764 1.08468 0.92028 0.85468 1.85985 1.83712 1.40343 1.12324 1.22741 0.99807 0.95941 0.87648 1.17643 0.89544 0.91900 0.86195 1.19266 1.21802 0.96277 1.09344 0.89192 1.25920 0.94260 1.00078 0.94072 1.69883 1.16276 1.36797 1.16552 0.86437 0.79257 0.82535 0.79151 1.18480 1.20124 1.18661 1.18732 1.07510 0.93321 0.93311 1.19744 0.94996 0.99817 0.91071 1.24592 1.16771 0.97405 1.01673 1.83302 1.73639 1.17875 1.00037 1.22047 1.06152 0.97483 0.94734 0.93776 0.92679 0.93105 0.92679 0.92672 0.87871 0.89951 0.94134 0.94226 0.90305 0.85623 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 37.16 0.37 -1.90 16 2 C -0.06 -1.12 5.84 -27.88 -0.16 -1.29 16 3 C -0.16 -3.48 5.16 -104.18 -0.54 -4.01 16 4 C -0.13 -2.89 8.56 -39.70 -0.34 -3.23 16 5 C 0.00 -0.03 6.70 -38.54 -0.26 -0.28 16 6 O -0.31 -6.99 9.93 -18.86 -0.19 -7.18 16 7 C 0.03 0.58 9.80 101.05 0.99 1.57 16 8 C 0.15 4.02 5.51 -104.13 -0.57 3.44 16 9 C -0.44 -11.38 8.43 -38.12 -0.32 -11.70 16 10 H 0.09 2.30 7.91 -52.48 -0.42 1.88 16 11 C 0.08 1.87 3.86 -17.31 -0.07 1.81 16 12 N -0.77 -19.37 10.82 55.55 0.60 -18.77 16 13 Si 0.90 18.08 29.61 -169.99 -5.03 13.05 16 14 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 15 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 17 C -0.12 -3.10 5.51 -104.76 -0.58 -3.68 16 18 C -0.03 -0.65 8.26 -40.78 -0.34 -0.98 16 19 C -0.27 -5.81 11.11 28.83 0.32 -5.49 16 20 S -0.01 -0.16 22.66 -107.50 -2.44 -2.60 16 21 C -0.09 -2.11 6.29 -38.49 -0.24 -2.35 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 26 H 0.05 0.99 7.73 -51.93 -0.40 0.58 16 27 H 0.10 1.96 6.19 -52.49 -0.33 1.63 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.63 7.65 -51.93 -0.40 0.24 16 30 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 31 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 32 H 0.13 3.01 6.08 -52.48 -0.32 2.69 16 33 H 0.14 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 289.40 15.07 4.36 4.36 Total: -1.00 -27.62 289.40 -8.35 -35.97 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.92 Total: 3.28 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -1.74 Total: -28.11 kcal Atomic # 7 Polarization: -19.37 SS G_CDS: 0.60 Total: -18.77 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.19 Total: -7.18 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.44 Total: -2.60 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.62 -8.35 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.481 kcal (2) G-P(sol) polarization free energy of solvation -27.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds