Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47047 * 2 1 4 4 C 1.37833 * 119.21438 * 264.72474 * 3 2 1 5 5 C 1.38312 * 121.01584 * 180.31752 * 4 3 2 6 6 O 1.35719 * 120.01595 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99916 * 359.93692 * 6 5 4 8 8 C 1.40915 * 119.96405 * 359.94024 * 5 4 3 9 9 C 1.40412 * 120.42345 * 180.02562 * 8 5 4 10 10 H 1.08005 * 119.99995 * 39.58713 * 9 8 5 11 11 C 1.39963 * 119.99856 * 219.57966 * 9 8 5 12 12 N 1.30894 * 120.00315 * 19.99512 * 11 9 8 13 13 Si 1.86811 * 120.00236 * 199.99071 * 11 9 8 14 14 H 1.48498 * 109.46862 * 60.00189 * 13 11 9 15 15 H 1.48494 * 109.47155 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46822 * 300.00360 * 13 11 9 17 17 C 1.47852 * 119.14490 * 0.04051 * 8 5 4 18 18 C 1.40097 * 129.15487 * 180.02562 * 17 8 5 19 19 C 1.32628 * 115.79865 * 180.02562 * 18 17 8 20 20 S 1.75504 * 110.66506 * 359.97438 * 19 18 17 21 21 C 1.39589 * 118.13336 * 359.97438 * 17 8 5 22 22 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47555 * 300.00198 * 1 2 3 24 24 H 1.09001 * 109.47144 * 60.00641 * 1 2 3 25 25 H 1.08994 * 109.47555 * 239.99802 * 2 1 3 26 26 H 1.09001 * 109.47144 * 119.99359 * 2 1 3 27 27 H 1.07996 * 119.48937 * 0.25613 * 4 3 2 28 28 H 1.09002 * 109.46910 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.46976 * 299.99631 * 7 6 5 30 30 H 1.08999 * 109.47329 * 59.99898 * 7 6 5 31 31 H 0.97002 * 120.00350 * 179.97438 * 12 11 9 32 32 H 1.08008 * 122.10089 * 359.97438 * 18 17 8 33 33 H 1.08007 * 124.67193 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0182 -1.1979 5 6 2.8315 3.3181 -1.2406 6 8 3.1484 3.8866 -2.4315 7 6 2.9726 3.0841 -3.6007 8 6 2.9802 4.0524 -0.0471 9 6 3.4567 5.3728 -0.0793 10 1 3.1366 6.0434 -0.8631 11 6 4.3463 5.8199 0.9044 12 7 5.0348 4.9555 1.6059 13 14 4.5511 7.6503 1.2163 14 1 3.2464 8.2325 1.6213 15 1 5.5448 7.8597 2.2998 16 1 5.0254 8.3138 -0.0247 17 6 2.6282 3.4144 1.2394 18 6 2.6926 3.9424 2.5355 19 6 2.3083 3.1288 3.5099 20 16 1.8145 1.5749 2.8608 21 6 2.1589 2.0999 1.2156 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2498 1.4624 -2.1172 28 1 3.2621 3.6571 -4.4816 29 1 3.5956 2.1928 -3.5267 30 1 1.9264 2.7901 -3.6857 31 1 5.6517 5.2653 2.2874 32 1 3.0344 4.9485 2.7291 33 1 2.2997 3.3873 4.5586 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -21.515387 kcal Electronic energy + Delta-G solvation = -17552.552785 eV Core-core repulsion = 14861.884772 eV Total energy + Delta-G solvation = -2690.668012 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57459 -38.64814 -36.50225 -35.31768 -33.39115 -30.85129 -29.44786 -28.05828 -26.82007 -24.21996 -23.82350 -21.94724 -20.74778 -19.63308 -17.82103 -17.47470 -17.27940 -16.47028 -16.18799 -15.79551 -15.27476 -14.86637 -14.72567 -14.23365 -14.06534 -13.69568 -13.43563 -13.09850 -13.04438 -12.85032 -12.67253 -12.48373 -12.28081 -12.15309 -12.03304 -11.76956 -11.60200 -11.07917 -10.97122 -10.72149 -9.65487 -8.82208 -8.77274 -8.11983 -6.20271 0.15181 0.85407 1.06559 1.36434 1.40477 1.46124 1.48829 1.90615 2.19605 2.66963 2.89906 3.46250 4.10376 4.22597 4.35742 4.45692 4.49881 4.51641 4.63961 4.75784 4.79383 4.87039 4.90801 5.03099 5.12416 5.18665 5.23396 5.36667 5.44453 5.52199 5.75137 5.89716 5.97633 6.21217 6.31165 6.65683 6.80460 7.19995 8.29801 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.009852 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.157991 B = 2841.365676 C = 4244.879516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.151 4.151 4 C -0.138 4.138 5 C -0.015 4.015 6 O -0.337 6.337 7 C 0.026 3.974 8 C 0.108 3.892 9 C -0.477 4.477 10 H 0.076 0.924 11 C 0.046 3.954 12 N -0.807 5.807 13 Si 0.967 3.033 14 H -0.259 1.259 15 H -0.264 1.264 16 H -0.261 1.261 17 C -0.140 4.140 18 C -0.058 4.058 19 C -0.260 4.260 20 S 0.047 5.953 21 C -0.128 4.128 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.290 0.710 32 H 0.116 0.884 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -4.687 -1.545 6.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.062 4.062 6 O -0.253 6.253 7 C -0.069 4.069 8 C 0.103 3.897 9 C -0.506 4.506 10 H 0.094 0.906 11 C -0.171 4.171 12 N -0.432 5.432 13 Si 0.788 3.212 14 H -0.183 1.183 15 H -0.189 1.189 16 H -0.186 1.186 17 C -0.147 4.147 18 C -0.087 4.087 19 C -0.393 4.393 20 S 0.306 5.694 21 C -0.243 4.243 22 H 0.094 0.906 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.628 -5.811 -0.653 7.457 hybrid contribution 0.959 2.044 -0.551 2.324 sum -3.669 -3.767 -1.204 5.394 Atomic orbital electron populations 1.21690 0.94466 1.01960 1.01389 1.20305 0.96494 0.91331 1.01903 1.18653 1.10042 0.97473 0.89639 1.20665 1.03281 0.94084 0.97903 1.19031 1.08492 0.92833 0.85823 1.85933 1.83836 1.42272 1.13211 1.23086 1.01061 0.96405 0.86331 1.18086 0.91095 0.92859 0.87611 1.19303 1.23886 0.96755 1.10636 0.90622 1.26558 0.93219 1.03994 0.93323 1.69923 1.17194 1.38558 1.17511 0.85472 0.79289 0.77292 0.79135 1.18334 1.18854 1.18558 1.19073 1.07510 0.94424 0.93739 1.19769 0.97302 1.00227 0.91428 1.25082 1.13855 0.97496 1.02820 1.82975 1.72602 1.16365 0.97419 1.22484 1.07189 0.97524 0.97107 0.90613 0.93996 0.93008 0.90550 0.92511 0.84790 0.87126 0.93230 0.92741 0.89912 0.86613 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.89 71.98 0.71 -3.20 16 2 C -0.06 -2.06 5.84 29.85 0.17 -1.89 16 3 C -0.15 -6.44 5.16 -19.58 -0.10 -6.55 16 4 C -0.14 -5.97 8.56 22.19 0.19 -5.78 16 5 C -0.02 -0.76 6.70 22.94 0.15 -0.61 16 6 O -0.34 -15.53 9.93 -90.41 -0.90 -16.43 16 7 C 0.03 0.83 9.80 113.37 1.11 1.94 16 8 C 0.11 5.95 5.51 -19.55 -0.11 5.84 16 9 C -0.48 -26.12 8.43 23.22 0.20 -25.92 16 10 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 11 C 0.05 2.32 3.86 85.25 0.33 2.65 16 12 N -0.81 -42.02 10.82 21.84 0.24 -41.79 16 13 Si 0.97 38.31 29.61 68.60 2.03 40.34 16 14 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 15 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 17 C -0.14 -7.33 5.51 -19.95 -0.11 -7.44 16 18 C -0.06 -2.81 8.26 21.56 0.18 -2.63 16 19 C -0.26 -10.80 11.11 66.66 0.74 -10.06 16 20 S 0.05 1.84 22.66 -56.49 -1.28 0.56 16 21 C -0.13 -6.01 6.29 22.98 0.14 -5.87 16 22 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 2.19 8.00 -2.39 -0.02 2.17 16 26 H 0.06 1.85 7.73 -2.39 -0.02 1.83 16 27 H 0.13 4.77 6.19 -2.91 -0.02 4.75 16 28 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.05 1.47 7.65 -2.39 -0.02 1.45 16 30 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 31 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 32 H 0.12 5.75 6.08 -2.91 -0.02 5.73 16 33 H 0.17 5.94 8.06 -2.91 -0.02 5.92 16 Total: -1.00 -61.88 289.40 4.82 -57.07 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.12 Total: 19.75 kcal Atomic # 6 Polarization: -63.11 SS G_CDS: 3.61 Total: -59.50 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.24 Total: -41.79 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.90 Total: -16.43 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.28 Total: 0.56 kcal Total: -61.88 4.82 -57.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.552 kcal (2) G-P(sol) polarization free energy of solvation -61.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds