Wall clock time and date at job start Mon Mar 30 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46994 * 2 1 4 4 C 1.32722 * 124.66409 * 89.72121 * 3 2 1 5 5 C 1.39984 * 115.80540 * 179.82489 * 4 3 2 6 6 C 1.39769 * 112.69312 * 0.45384 * 5 4 3 7 7 S 1.75511 * 124.65978 * 270.02303 * 3 2 1 8 8 C 1.39607 * 120.06958 * 179.79613 * 6 5 4 9 9 C 1.50703 * 119.27209 * 179.97438 * 8 6 5 10 10 O 1.42908 * 109.46935 * 180.02562 * 9 8 6 11 11 C 1.38154 * 121.44993 * 359.97438 * 8 6 5 12 12 C 1.37614 * 121.08763 * 359.97438 * 11 8 6 13 13 C 1.40360 * 120.13782 * 0.02648 * 12 11 8 14 14 C 1.40579 * 120.40264 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99811 * 154.32124 * 14 13 12 16 16 C 1.40003 * 119.99866 * 334.31837 * 14 13 12 17 17 N 1.30827 * 120.00043 * 343.30088 * 16 14 13 18 18 Si 1.86794 * 119.99735 * 163.29719 * 16 14 13 19 19 H 1.48504 * 109.47287 * 90.00286 * 18 16 14 20 20 H 1.48505 * 109.47084 * 210.00343 * 18 16 14 21 21 H 1.48507 * 109.47459 * 330.00010 * 18 16 14 22 22 H 1.08995 * 109.47071 * 60.00223 * 1 2 3 23 23 H 1.08997 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47040 * 300.00184 * 1 2 3 25 25 H 1.08995 * 109.47071 * 119.99776 * 2 1 3 26 26 H 1.09001 * 109.47040 * 239.99816 * 2 1 3 27 27 H 1.07995 * 122.09519 * 0.02562 * 4 3 2 28 28 H 1.09000 * 109.47162 * 299.99516 * 9 8 6 29 29 H 1.08997 * 109.47070 * 59.99966 * 9 8 6 30 30 H 0.96694 * 113.99769 * 180.02562 * 10 9 8 31 31 H 1.07998 * 119.45846 * 180.02562 * 11 8 6 32 32 H 1.07995 * 119.92784 * 180.02562 * 12 11 8 33 33 H 0.97003 * 120.00386 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2790 2.1343 1.0916 5 6 2.7446 3.4367 0.8761 6 6 2.8556 3.7520 -0.4811 7 16 2.3645 2.3621 -1.4437 8 6 3.3026 5.0157 -0.8713 9 6 3.4161 5.3362 -2.3395 10 8 3.8902 6.6748 -2.4996 11 6 3.6432 5.9788 0.0587 12 6 3.5533 5.7264 1.4085 13 6 3.1105 4.4745 1.8634 14 6 3.0160 4.2108 3.2410 15 1 2.3225 3.4657 3.6018 16 6 3.8209 4.9141 4.1452 17 7 4.8721 5.5644 3.7164 18 14 3.3940 4.9241 5.9636 19 1 4.0659 3.7833 6.6362 20 1 3.8532 6.1981 6.5729 21 1 1.9233 4.7989 6.1276 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 2.1328 1.7340 2.0839 28 1 4.1156 4.6448 -2.8093 29 1 2.4375 5.2383 -2.8094 30 1 3.9872 6.9500 -3.4214 31 1 3.9849 6.9460 -0.2790 32 1 3.8240 6.4931 2.1193 33 1 5.4296 6.0520 4.3428 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396316288.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:32 Heat of formation + Delta-G solvation = -33.350102 kcal Electronic energy + Delta-G solvation = -16921.089838 eV Core-core repulsion = 14229.908634 eV Total energy + Delta-G solvation = -2691.181204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.24007 -36.42298 -35.16378 -33.87375 -31.95377 -30.32390 -27.75232 -26.56899 -23.87635 -23.28815 -21.67995 -19.79353 -19.09625 -17.68796 -16.74505 -15.74722 -15.15786 -14.70539 -14.35553 -14.29998 -14.03806 -13.36874 -13.14451 -12.87354 -12.51919 -12.05209 -11.86885 -11.62486 -11.40416 -11.20252 -11.17600 -10.85848 -10.81552 -10.55023 -10.09602 -9.94300 -9.70339 -9.63899 -9.45960 -9.19784 -8.11511 -7.20167 -7.01106 -6.72426 -4.48338 1.94058 2.61891 2.63679 2.93459 2.96691 3.03314 3.06538 3.63555 3.72549 4.36820 4.83951 5.34513 5.42646 5.45841 5.71119 5.80208 5.99105 6.09300 6.11498 6.12859 6.25629 6.39179 6.48741 6.54493 6.63076 6.82052 6.97975 7.16851 7.30434 7.35691 7.71136 7.81118 7.83414 7.97379 8.20455 8.41364 8.58418 8.73158 9.85844 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.008416 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.359034 B = 3326.329459 C = 5093.815459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.036 4.036 3 C -0.242 4.242 4 C -0.053 4.053 5 C -0.189 4.189 6 C -0.060 4.060 7 S -0.006 6.006 8 C -0.214 4.214 9 C 0.143 3.857 10 O -0.567 6.567 11 C -0.034 4.034 12 C -0.198 4.198 13 C 0.155 3.845 14 C -0.428 4.428 15 H 0.085 0.915 16 C 0.072 3.928 17 N -0.765 5.765 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.257 1.257 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.122 0.878 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.367 0.633 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 -3.515 -4.342 6.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.357 4.357 4 C -0.082 4.082 5 C -0.195 4.195 6 C -0.175 4.175 7 S 0.255 5.745 8 C -0.221 4.221 9 C 0.066 3.934 10 O -0.371 6.371 11 C -0.055 4.055 12 C -0.220 4.220 13 C 0.150 3.850 14 C -0.455 4.455 15 H 0.103 0.897 16 C -0.150 4.150 17 N -0.387 5.387 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.180 1.180 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.212 0.788 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.227 -3.790 -5.099 7.126 hybrid contribution 0.117 0.321 1.618 1.654 sum -3.111 -3.469 -3.481 5.816 Atomic orbital electron populations 1.21784 0.95623 1.00601 1.02251 1.19827 0.95160 0.90960 1.01645 1.23276 1.17166 1.00351 0.94874 1.19574 0.97657 0.93225 0.97782 1.19024 1.14183 0.94593 0.91736 1.21836 1.04262 0.95839 0.95515 1.83288 1.73164 1.07180 1.10854 1.18055 1.17564 0.93781 0.92748 1.20589 0.95739 0.81996 0.95113 1.86519 1.89357 1.31021 1.30171 1.20328 0.95500 0.96962 0.92672 1.21057 1.09557 0.97325 0.94021 1.18483 0.86368 0.88860 0.91271 1.19628 1.17418 1.17328 0.91111 0.89662 1.26101 0.93376 0.93038 1.02470 1.69835 1.09329 1.21379 1.38198 0.86184 0.80582 0.78893 0.80537 1.19077 1.19668 1.18042 0.92807 0.93181 0.92569 0.91257 0.92120 0.86002 0.94756 0.94751 0.78764 0.87563 0.85998 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.90 37.16 0.37 -1.62 16 2 C -0.04 -0.56 6.39 -27.88 -0.18 -0.74 16 3 C -0.24 -4.78 5.69 -36.19 -0.21 -4.99 16 4 C -0.05 -1.18 9.61 -40.81 -0.39 -1.57 16 5 C -0.19 -4.73 6.02 -104.74 -0.63 -5.37 16 6 C -0.06 -1.42 6.30 -38.50 -0.24 -1.66 16 7 S -0.01 -0.12 22.94 -107.50 -2.47 -2.59 16 8 C -0.21 -5.01 5.91 -104.14 -0.62 -5.63 16 9 C 0.14 2.74 7.07 36.01 0.25 3.00 16 10 O -0.57 -9.99 12.04 -35.23 -0.42 -10.41 16 11 C -0.03 -0.83 9.29 -39.84 -0.37 -1.20 16 12 C -0.20 -5.14 8.66 -39.01 -0.34 -5.47 16 13 C 0.16 4.08 5.75 -104.29 -0.60 3.48 16 14 C -0.43 -10.76 8.82 -38.04 -0.34 -11.10 16 15 H 0.09 2.04 7.53 -52.49 -0.40 1.65 16 16 C 0.07 1.70 5.15 -17.32 -0.09 1.61 16 17 N -0.77 -18.70 10.96 55.55 0.61 -18.09 16 18 Si 0.91 17.44 29.59 -169.99 -5.03 12.41 16 19 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.12 2.55 7.74 -52.49 -0.41 2.14 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.37 4.26 9.12 45.56 0.42 4.67 16 31 H 0.11 2.47 6.89 -52.49 -0.36 2.10 16 32 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 33 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 294.18 15.07 4.43 4.43 Total: -1.00 -28.12 294.18 -9.42 -37.54 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.17 Total: 7.96 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -3.38 Total: -31.25 kcal Atomic # 7 Polarization: -18.70 SS G_CDS: 0.61 Total: -18.09 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.42 Total: -10.41 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.47 Total: -2.59 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.12 -9.42 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316288.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.188 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds