Wall clock time and date at job start Mon Mar 30 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46994 * 2 1 4 4 C 1.32722 * 124.66409 * 89.72121 * 3 2 1 5 5 C 1.39984 * 115.80540 * 179.82489 * 4 3 2 6 6 C 1.39769 * 112.69312 * 0.45384 * 5 4 3 7 7 S 1.75511 * 124.65978 * 270.02303 * 3 2 1 8 8 C 1.39607 * 120.06958 * 179.79613 * 6 5 4 9 9 C 1.50703 * 119.27209 * 179.97438 * 8 6 5 10 10 O 1.42908 * 109.46935 * 180.02562 * 9 8 6 11 11 C 1.38154 * 121.44993 * 359.97438 * 8 6 5 12 12 C 1.37614 * 121.08763 * 359.97438 * 11 8 6 13 13 C 1.40360 * 120.13782 * 0.02648 * 12 11 8 14 14 C 1.40579 * 120.40264 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99811 * 154.32124 * 14 13 12 16 16 C 1.40003 * 119.99866 * 334.31837 * 14 13 12 17 17 N 1.30827 * 120.00043 * 343.30088 * 16 14 13 18 18 Si 1.86794 * 119.99735 * 163.29719 * 16 14 13 19 19 H 1.48504 * 109.47287 * 90.00286 * 18 16 14 20 20 H 1.48505 * 109.47084 * 210.00343 * 18 16 14 21 21 H 1.48507 * 109.47459 * 330.00010 * 18 16 14 22 22 H 1.08995 * 109.47071 * 60.00223 * 1 2 3 23 23 H 1.08997 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47040 * 300.00184 * 1 2 3 25 25 H 1.08995 * 109.47071 * 119.99776 * 2 1 3 26 26 H 1.09001 * 109.47040 * 239.99816 * 2 1 3 27 27 H 1.07995 * 122.09519 * 0.02562 * 4 3 2 28 28 H 1.09000 * 109.47162 * 299.99516 * 9 8 6 29 29 H 1.08997 * 109.47070 * 59.99966 * 9 8 6 30 30 H 0.96694 * 113.99769 * 180.02562 * 10 9 8 31 31 H 1.07998 * 119.45846 * 180.02562 * 11 8 6 32 32 H 1.07995 * 119.92784 * 180.02562 * 12 11 8 33 33 H 0.97003 * 120.00386 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2790 2.1343 1.0916 5 6 2.7446 3.4367 0.8761 6 6 2.8556 3.7520 -0.4811 7 16 2.3645 2.3621 -1.4437 8 6 3.3026 5.0157 -0.8713 9 6 3.4161 5.3362 -2.3395 10 8 3.8902 6.6748 -2.4996 11 6 3.6432 5.9788 0.0587 12 6 3.5533 5.7264 1.4085 13 6 3.1105 4.4745 1.8634 14 6 3.0160 4.2108 3.2410 15 1 2.3225 3.4657 3.6018 16 6 3.8209 4.9141 4.1452 17 7 4.8721 5.5644 3.7164 18 14 3.3940 4.9241 5.9636 19 1 4.0659 3.7833 6.6362 20 1 3.8532 6.1981 6.5729 21 1 1.9233 4.7989 6.1276 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 2.1328 1.7340 2.0839 28 1 4.1156 4.6448 -2.8093 29 1 2.4375 5.2383 -2.8094 30 1 3.9872 6.9500 -3.4214 31 1 3.9849 6.9460 -0.2790 32 1 3.8240 6.4931 2.1193 33 1 5.4296 6.0520 4.3428 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396316288.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:32 Heat of formation + Delta-G solvation = -49.400335 kcal Electronic energy + Delta-G solvation = -16921.785828 eV Core-core repulsion = 14229.908634 eV Total energy + Delta-G solvation = -2691.877194 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99777 -37.90632 -36.78470 -35.56437 -33.43992 -32.11293 -29.47145 -28.19726 -25.50296 -24.84645 -23.35621 -21.47381 -20.77453 -19.48195 -18.23254 -17.42673 -16.78416 -16.39049 -15.90103 -15.81586 -15.63940 -14.84704 -14.61163 -14.40614 -14.16623 -13.69229 -13.48132 -13.16374 -12.97411 -12.86595 -12.72133 -12.29682 -12.21583 -12.04188 -11.58224 -11.53393 -11.47792 -11.30463 -11.19801 -10.87947 -9.86955 -8.98396 -8.77302 -8.46717 -6.34522 0.17762 0.83002 0.93983 1.31969 1.36039 1.45609 1.52558 1.83767 2.13258 2.57831 3.51431 3.55769 3.97919 4.26013 4.28983 4.45458 4.52864 4.58849 4.61245 4.63550 4.78456 4.96333 5.03577 5.04386 5.12803 5.18003 5.39534 5.44011 5.48941 5.57039 5.93422 5.96322 6.04365 6.15509 6.53882 6.72829 6.85450 7.02808 8.14186 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.008416 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.359034 B = 3326.329459 C = 5093.815459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.216 4.216 4 C -0.090 4.090 5 C -0.207 4.207 6 C -0.096 4.096 7 S 0.049 5.951 8 C -0.224 4.224 9 C 0.150 3.850 10 O -0.581 6.581 11 C -0.047 4.047 12 C -0.224 4.224 13 C 0.122 3.878 14 C -0.459 4.459 15 H 0.086 0.914 16 C 0.034 3.966 17 N -0.801 5.801 18 Si 0.989 3.011 19 H -0.257 1.257 20 H -0.263 1.263 21 H -0.255 1.255 22 H 0.050 0.950 23 H 0.081 0.919 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.395 0.605 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -5.366 -5.263 8.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.331 4.331 4 C -0.119 4.119 5 C -0.213 4.213 6 C -0.211 4.211 7 S 0.311 5.689 8 C -0.231 4.231 9 C 0.073 3.927 10 O -0.389 6.389 11 C -0.068 4.068 12 C -0.246 4.246 13 C 0.117 3.883 14 C -0.487 4.487 15 H 0.104 0.896 16 C -0.185 4.185 17 N -0.424 5.424 18 Si 0.808 3.192 19 H -0.182 1.182 20 H -0.187 1.187 21 H -0.179 1.179 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.144 0.856 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.244 0.756 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.121 -5.628 -6.071 9.248 hybrid contribution 0.366 0.774 1.691 1.895 sum -3.755 -4.854 -4.381 7.540 Atomic orbital electron populations 1.21749 0.93892 1.02575 1.01647 1.20063 0.96528 0.88056 1.03345 1.24014 1.13023 1.01875 0.94147 1.19642 1.00393 0.92881 0.99020 1.19450 1.13898 0.95549 0.92399 1.22234 1.05005 0.97601 0.96215 1.82993 1.71806 1.04646 1.09475 1.18559 1.16031 0.93466 0.95072 1.20459 0.96982 0.83018 0.92250 1.86455 1.89272 1.30173 1.33045 1.20449 0.96070 0.97736 0.92507 1.21012 1.11639 0.97377 0.94578 1.18840 0.87512 0.89507 0.92440 1.19838 1.18598 1.18759 0.91466 0.89587 1.26984 0.92614 0.92033 1.06866 1.69883 1.10284 1.22176 1.40074 0.85092 0.80194 0.79348 0.74537 1.18186 1.18670 1.17890 0.93105 0.89991 0.93534 0.89856 0.90135 0.85614 0.93478 0.93133 0.75567 0.87127 0.87522 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.90 71.98 0.71 -2.66 16 2 C -0.04 -1.11 6.39 29.85 0.19 -0.92 16 3 C -0.22 -8.08 5.69 24.51 0.14 -7.94 16 4 C -0.09 -4.01 9.61 21.52 0.21 -3.80 16 5 C -0.21 -10.59 6.02 -19.94 -0.12 -10.71 16 6 C -0.10 -4.56 6.30 22.97 0.14 -4.41 16 7 S 0.05 1.86 22.94 -56.49 -1.30 0.56 16 8 C -0.22 -10.57 5.91 -19.55 -0.12 -10.69 16 9 C 0.15 5.54 7.07 71.24 0.50 6.04 16 10 O -0.58 -19.63 12.04 -148.98 -1.79 -21.43 16 11 C -0.05 -2.39 9.29 22.10 0.21 -2.18 16 12 C -0.22 -12.34 8.66 22.64 0.20 -12.15 16 13 C 0.12 6.74 5.75 -19.65 -0.11 6.63 16 14 C -0.46 -24.25 8.82 23.27 0.21 -24.04 16 15 H 0.09 4.32 7.53 -2.91 -0.02 4.29 16 16 C 0.03 1.64 5.15 85.27 0.44 2.08 16 17 N -0.80 -40.91 10.96 21.84 0.24 -40.67 16 18 Si 0.99 36.38 29.59 68.60 2.03 38.41 16 19 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 20 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 21 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.13 5.33 7.74 -2.91 -0.02 5.31 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.39 8.21 9.12 -74.06 -0.68 7.54 16 31 H 0.11 5.33 6.89 -2.91 -0.02 5.31 16 32 H 0.11 6.01 6.18 -2.91 -0.02 5.99 16 33 H 0.30 13.46 8.30 -92.71 -0.77 12.69 16 Total: -1.00 -63.10 294.18 2.23 -60.87 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.46 Total: 27.02 kcal Atomic # 6 Polarization: -67.35 SS G_CDS: 2.59 Total: -64.75 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.24 Total: -40.67 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.79 Total: -21.43 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.30 Total: 0.56 kcal Total: -63.10 2.23 -60.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316288.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.465 kcal (2) G-P(sol) polarization free energy of solvation -63.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds