Wall clock time and date at job start Mon Mar 30 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47253 * 2 1 4 4 C 1.31695 * 124.23489 * 90.00559 * 3 2 1 5 5 C 1.45579 * 114.88911 * 180.02562 * 4 3 2 6 6 C 1.40182 * 111.77215 * 359.97438 * 5 4 3 7 7 C 1.40421 * 120.17344 * 180.02562 * 6 5 4 8 8 C 1.35711 * 120.82409 * 0.03100 * 7 6 5 9 9 C 1.41130 * 120.10573 * 359.95099 * 8 7 6 10 10 C 1.41275 * 120.05592 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99371 * 205.75158 * 10 9 8 12 12 C 1.39852 * 120.00212 * 25.74929 * 10 9 8 13 13 N 1.30894 * 120.00405 * 15.46568 * 12 10 9 14 14 Si 1.86798 * 119.99879 * 195.46150 * 12 10 9 15 15 H 1.48501 * 109.47229 * 90.00080 * 14 12 10 16 16 H 1.48501 * 109.47600 * 210.00182 * 14 12 10 17 17 H 1.48503 * 109.47235 * 330.00223 * 14 12 10 18 18 C 1.39939 * 119.88227 * 0.02932 * 9 8 7 19 19 C 1.50698 * 120.00848 * 180.02562 * 18 9 8 20 20 O 1.42899 * 109.47174 * 270.00438 * 19 18 9 21 21 S 1.75257 * 124.24074 * 269.70458 * 3 2 1 22 22 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46926 * 299.99552 * 1 2 3 24 24 H 1.08992 * 109.47209 * 59.99510 * 1 2 3 25 25 H 1.08999 * 109.47622 * 120.01038 * 2 1 3 26 26 H 1.09004 * 109.46926 * 240.00448 * 2 1 3 27 27 H 1.08003 * 122.55861 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.58789 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.94448 * 179.97438 * 8 7 6 30 30 H 0.96994 * 120.00352 * 180.02562 * 13 12 10 31 31 H 1.08995 * 109.47167 * 30.00696 * 19 18 9 32 32 H 1.09003 * 109.46951 * 150.00275 * 19 18 9 33 33 H 0.96699 * 113.99993 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2794 2.1193 1.0888 5 6 2.7577 3.4738 0.8524 6 6 2.8582 3.7582 -0.5166 7 6 3.3041 5.0191 -0.9446 8 6 3.6438 5.9782 -0.0467 9 6 3.5511 5.7171 1.3372 10 6 3.9046 6.7164 2.2711 11 1 4.2369 6.4378 3.2602 12 6 3.8243 8.0664 1.9147 13 7 3.1492 8.4237 0.8517 14 14 4.6804 9.3597 2.9557 15 1 6.0622 9.5654 2.4522 16 1 3.9286 10.6378 2.8746 17 1 4.7310 8.9042 4.3683 18 6 3.1085 4.4664 1.7826 19 6 3.0079 4.1847 3.2596 20 8 4.2463 3.6466 3.7273 21 16 2.3681 2.3480 -1.4488 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5140 0.8898 26 1 1.8933 -0.5138 -0.8901 27 1 2.1380 1.7179 2.0814 28 1 3.3775 5.2281 -2.0016 29 1 3.9854 6.9429 -0.3916 30 1 3.0939 9.3600 0.6043 31 1 2.7898 5.1105 3.7920 32 1 2.2085 3.4657 3.4386 33 1 4.2537 3.4406 4.6721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396316454.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:49 Heat of formation + Delta-G solvation = -32.631845 kcal Electronic energy + Delta-G solvation = -17021.311080 eV Core-core repulsion = 14330.161022 eV Total energy + Delta-G solvation = -2691.150058 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.43625 -35.95128 -35.47256 -33.77900 -31.70997 -30.60429 -28.01668 -25.82058 -24.44719 -23.46594 -21.56083 -19.86551 -19.23883 -17.21995 -16.56407 -16.10116 -15.42504 -14.80002 -14.69842 -13.84941 -13.64864 -13.39656 -13.02872 -12.72757 -12.52197 -12.40121 -11.93934 -11.71664 -11.35163 -11.25283 -11.17764 -10.89407 -10.80688 -10.59942 -10.14538 -9.99441 -9.78024 -9.36941 -9.20317 -9.06243 -8.28359 -7.26753 -6.97979 -6.68329 -4.48215 1.85417 2.50808 2.56612 3.00494 3.04012 3.04930 3.06876 3.44973 3.83706 4.43790 5.05938 5.18821 5.26656 5.48974 5.70983 5.75125 5.91025 5.93862 6.05702 6.10046 6.17954 6.32065 6.33297 6.52889 6.61487 6.73490 6.89168 7.01118 7.18596 7.48056 7.54772 7.65818 7.87826 8.09709 8.37803 8.46136 8.73571 8.77467 10.03535 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.006014 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.486885 B = 4654.828084 C = 5320.208886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.171 4.171 4 C -0.114 4.114 5 C -0.019 4.019 6 C -0.223 4.223 7 C -0.079 4.079 8 C -0.119 4.119 9 C 0.130 3.870 10 C -0.447 4.447 11 H 0.086 0.914 12 C 0.074 3.926 13 N -0.791 5.791 14 Si 0.913 3.087 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.193 4.193 19 C 0.143 3.857 20 O -0.570 6.570 21 S 0.004 5.996 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.284 0.716 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -7.384 1.060 7.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.286 4.286 4 C -0.145 4.145 5 C -0.026 4.026 6 C -0.337 4.337 7 C -0.101 4.101 8 C -0.140 4.140 9 C 0.126 3.874 10 C -0.476 4.476 11 H 0.104 0.896 12 C -0.145 4.145 13 N -0.417 5.417 14 Si 0.738 3.262 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.198 4.198 19 C 0.067 3.933 20 O -0.374 6.374 21 S 0.265 5.735 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.147 0.853 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.482 -7.432 -1.239 7.933 hybrid contribution 0.232 0.979 2.379 2.583 sum -2.250 -6.454 1.140 6.929 Atomic orbital electron populations 1.21767 0.94904 1.01127 1.02525 1.20044 0.95781 0.90700 1.02361 1.23464 1.08909 0.99871 0.96339 1.20822 1.02144 0.93663 0.97901 1.18708 0.99576 0.92142 0.92125 1.21886 1.18608 0.98316 0.94894 1.19839 1.00970 0.91259 0.98022 1.21131 1.01593 0.98322 0.92918 1.17297 0.86957 0.90779 0.92356 1.19644 1.37943 0.89848 1.00159 0.89624 1.25998 0.93014 1.00213 0.95244 1.69818 1.29441 1.19448 1.22948 0.86219 0.80038 0.79035 0.80954 1.19106 1.20219 1.18471 1.19170 1.13986 0.95374 0.91267 1.20616 0.84070 0.95633 0.93015 1.86709 1.37440 1.85989 1.27213 1.83265 1.73693 1.07017 1.09518 0.92698 0.92469 0.92449 0.90821 0.91367 0.85747 0.88700 0.85257 0.90546 0.93057 0.95627 0.79882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.89 37.16 0.37 -1.41 16 2 C -0.05 -0.68 6.36 -27.89 -0.18 -0.86 16 3 C -0.17 -3.12 5.62 -36.19 -0.20 -3.32 16 4 C -0.11 -2.31 9.62 -38.53 -0.37 -2.68 16 5 C -0.02 -0.46 5.97 -105.39 -0.63 -1.09 16 6 C -0.22 -5.26 6.51 -38.03 -0.25 -5.50 16 7 C -0.08 -1.88 9.98 -39.66 -0.40 -2.28 16 8 C -0.12 -3.04 8.59 -39.39 -0.34 -3.38 16 9 C 0.13 3.42 5.55 -107.01 -0.59 2.82 16 10 C -0.45 -11.43 8.09 -37.82 -0.31 -11.74 16 11 H 0.09 2.14 6.82 -52.49 -0.36 1.79 16 12 C 0.07 1.77 5.17 -17.35 -0.09 1.68 16 13 N -0.79 -19.54 10.88 55.54 0.60 -18.93 16 14 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 15 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 16 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 18 C -0.19 -4.80 5.63 -103.14 -0.58 -5.38 16 19 C 0.14 3.04 6.38 36.00 0.23 3.27 16 20 O -0.57 -11.55 13.64 -35.23 -0.48 -12.03 16 21 S 0.00 0.09 23.19 -107.50 -2.49 -2.41 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.12 2.28 7.54 -52.48 -0.40 1.88 16 28 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.13 3.33 6.14 -52.49 -0.32 3.00 16 30 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 31 H 0.05 1.09 6.73 -51.93 -0.35 0.74 16 32 H 0.03 0.49 7.26 -51.93 -0.38 0.11 16 33 H 0.36 5.08 9.12 45.56 0.42 5.50 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -28.58 292.68 -9.38 -37.97 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.06 Total: 7.86 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -3.34 Total: -29.87 kcal Atomic # 7 Polarization: -19.54 SS G_CDS: 0.60 Total: -18.93 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.48 Total: -12.03 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.49 Total: -2.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.58 -9.38 -37.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316454.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.334 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds