Wall clock time and date at job start Mon Mar 30 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47170 * 2 1 4 4 C 1.37619 * 119.74761 * 265.00480 * 3 2 1 5 5 C 1.39386 * 120.19275 * 180.02562 * 4 3 2 6 6 O 1.35984 * 119.80430 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99955 * 179.97438 * 6 5 4 8 8 C 1.37338 * 120.39046 * 359.97037 * 5 4 3 9 9 C 1.41919 * 120.32290 * 0.02562 * 8 5 4 10 10 C 1.39798 * 128.44984 * 179.97438 * 9 8 5 11 11 C 1.36947 * 115.02842 * 180.02562 * 10 9 8 12 12 C 1.39915 * 124.82811 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99760 * 353.26473 * 12 11 10 14 14 C 1.40185 * 119.99971 * 173.26768 * 12 11 10 15 15 N 1.30759 * 119.99780 * 6.60233 * 14 12 11 16 16 Si 1.86800 * 119.99732 * 186.60659 * 14 12 11 17 17 H 1.48504 * 109.46976 * 94.98864 * 16 14 12 18 18 H 1.48505 * 109.46863 * 214.98166 * 16 14 12 19 19 H 1.48493 * 109.47242 * 334.98431 * 16 14 12 20 20 S 1.75454 * 110.34622 * 0.02562 * 11 10 9 21 21 C 1.39600 * 119.73783 * 85.00544 * 3 2 1 22 22 H 1.09000 * 109.47419 * 59.99648 * 1 2 3 23 23 H 1.09000 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46666 * 299.99528 * 1 2 3 25 25 H 1.08999 * 109.46666 * 240.00472 * 2 1 3 26 26 H 1.08995 * 109.46847 * 120.00754 * 2 1 3 27 27 H 1.08007 * 119.90121 * 0.03787 * 4 3 2 28 28 H 1.08994 * 109.47563 * 59.99537 * 7 6 5 29 29 H 1.08999 * 109.46694 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46530 * 299.99380 * 7 6 5 31 31 H 1.08000 * 119.84110 * 180.02562 * 8 5 4 32 32 H 1.07993 * 122.48432 * 0.05472 * 10 9 8 33 33 H 0.97000 * 119.99403 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3581 2.0299 -1.1903 5 6 2.8241 3.3435 -1.2010 6 8 3.1431 3.9379 -2.3818 7 6 3.6143 5.2857 -2.3232 8 6 2.9619 4.0415 -0.0263 9 6 2.6315 3.4321 1.2121 10 6 2.7060 3.9783 2.4969 11 6 2.3161 3.1392 3.5066 12 6 2.3082 3.4735 4.8652 13 1 2.7268 4.4138 5.1923 14 6 1.7572 2.5879 5.8018 15 7 1.3684 1.3974 5.4258 16 14 1.5782 3.1087 7.5868 17 1 0.2100 3.6401 7.8125 18 1 1.8057 1.9363 8.4695 19 1 2.5765 4.1632 7.8972 20 16 1.8278 1.5854 2.8542 21 6 2.1637 2.1089 1.2076 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2521 1.4885 -2.1188 28 1 4.5209 5.3278 -1.7197 29 1 3.8324 5.6384 -3.3312 30 1 2.8490 5.9188 -1.8740 31 1 3.3234 5.0590 -0.0450 32 1 3.0453 4.9871 2.6795 33 1 0.9874 0.7845 6.0740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396316496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:06 Heat of formation + Delta-G solvation = -35.760700 kcal Electronic energy + Delta-G solvation = -16925.556956 eV Core-core repulsion = 14234.271220 eV Total energy + Delta-G solvation = -2691.285735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23775 -37.14626 -35.18035 -33.73998 -31.85587 -29.12447 -28.18612 -27.04713 -25.18526 -23.12620 -22.10001 -20.27852 -19.03476 -17.82309 -16.61847 -15.99516 -15.46002 -15.14827 -14.97696 -14.10139 -13.71305 -13.43207 -13.19420 -12.67676 -12.42051 -12.12275 -11.97735 -11.73394 -11.57839 -11.48421 -11.32683 -11.04396 -10.90118 -10.56171 -10.44684 -10.11647 -9.97114 -9.82376 -9.04485 -8.99741 -8.11060 -7.27551 -7.20280 -6.22239 -4.71453 2.02373 2.47091 2.79889 2.83696 2.89594 3.31871 3.56056 3.57099 3.85412 3.95189 4.59067 5.05964 5.41749 5.51882 5.52644 5.59808 5.73260 5.90763 5.98217 6.05474 6.22172 6.31625 6.38480 6.42882 6.64069 6.71273 6.78414 7.05573 7.19387 7.30087 7.34680 7.52017 7.67265 7.82765 7.93074 8.20444 8.37427 8.40958 9.62784 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.006336 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.195109 B = 4418.428941 C = 5426.502077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C 0.014 3.986 4 C -0.217 4.217 5 C 0.134 3.866 6 O -0.330 6.330 7 C 0.033 3.967 8 C -0.251 4.251 9 C 0.053 3.947 10 C -0.370 4.370 11 C 0.058 3.942 12 C -0.384 4.384 13 H 0.098 0.902 14 C 0.054 3.946 15 N -0.773 5.773 16 Si 0.938 3.062 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.256 1.256 20 S 0.137 5.863 21 C -0.284 4.284 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -0.141 -3.888 3.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C 0.010 3.990 4 C -0.238 4.238 5 C 0.088 3.912 6 O -0.244 6.244 7 C -0.062 4.062 8 C -0.272 4.272 9 C 0.044 3.956 10 C -0.395 4.395 11 C -0.061 4.061 12 C -0.417 4.417 13 H 0.116 0.884 14 C -0.168 4.168 15 N -0.399 5.399 16 Si 0.761 3.239 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.180 1.180 20 S 0.397 5.603 21 C -0.398 4.398 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.931 -1.735 -3.345 3.881 hybrid contribution 0.571 1.949 0.242 2.045 sum -0.361 0.214 -3.103 3.131 Atomic orbital electron populations 1.21687 0.95067 1.00868 1.02406 1.20504 0.96092 0.93436 1.01962 1.18742 0.95627 0.94147 0.90519 1.19556 1.13761 0.93540 0.96949 1.18446 0.96727 0.92495 0.83539 1.85973 1.80976 1.27760 1.29687 1.22850 0.98796 0.82170 1.02419 1.20690 1.14938 1.00135 0.91391 1.17733 0.93310 0.91814 0.92695 1.19560 1.28349 1.01533 0.90061 1.21477 0.93836 0.94493 0.96315 1.19349 1.29189 1.03523 0.89676 0.88367 1.26327 0.93097 0.93890 1.03510 1.68710 1.27555 1.05636 1.37950 0.85758 0.80118 0.79592 0.78473 1.18824 1.19531 1.17985 1.84661 1.70705 1.14549 0.90392 1.23394 1.16182 0.99555 1.00675 0.92951 0.93050 0.92001 0.91783 0.91160 0.87107 0.93197 0.89386 0.93198 0.87542 0.87813 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.90 37.16 0.37 -1.95 16 2 C -0.08 -1.47 5.86 -27.88 -0.16 -1.63 16 3 C 0.01 0.30 5.15 -104.34 -0.54 -0.24 16 4 C -0.22 -4.56 9.59 -39.38 -0.38 -4.94 16 5 C 0.13 2.86 6.67 -39.48 -0.26 2.60 16 6 O -0.33 -6.21 10.50 -19.69 -0.21 -6.41 16 7 C 0.03 0.48 9.80 101.05 0.99 1.47 16 8 C -0.25 -5.67 9.08 -38.50 -0.35 -6.02 16 9 C 0.05 1.32 5.85 -107.11 -0.63 0.69 16 10 C -0.37 -9.58 10.14 -39.47 -0.40 -9.98 16 11 C 0.06 1.53 6.10 -39.42 -0.24 1.29 16 12 C -0.38 -9.48 9.26 -38.22 -0.35 -9.83 16 13 H 0.10 2.30 7.86 -52.49 -0.41 1.89 16 14 C 0.05 1.22 5.49 -17.28 -0.09 1.12 16 15 N -0.77 -17.88 10.63 55.56 0.59 -17.29 16 16 Si 0.94 16.79 29.57 -169.99 -5.03 11.76 16 17 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 18 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 19 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 20 S 0.14 3.37 19.53 -107.50 -2.10 1.27 16 21 C -0.28 -6.90 6.30 -38.28 -0.24 -7.14 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 26 H 0.07 1.28 7.74 -51.93 -0.40 0.87 16 27 H 0.11 2.08 8.05 -52.48 -0.42 1.66 16 28 H 0.05 0.70 7.64 -51.93 -0.40 0.30 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.70 7.64 -51.93 -0.40 0.30 16 31 H 0.11 2.18 6.21 -52.49 -0.33 1.86 16 32 H 0.10 2.58 8.06 -52.49 -0.42 2.15 16 33 H 0.30 6.19 8.29 -40.82 -0.34 5.86 16 LS Contribution 292.85 15.07 4.41 4.41 Total: -1.00 -27.55 292.85 -8.64 -36.20 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.02 Total: 4.64 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: -2.29 Total: -34.57 kcal Atomic # 7 Polarization: -17.88 SS G_CDS: 0.59 Total: -17.29 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.21 Total: -6.41 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.10 Total: 1.27 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.55 -8.64 -36.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.436 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds