Wall clock time and date at job start Mon Mar 30 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47170 * 2 1 4 4 C 1.37619 * 119.74761 * 265.00480 * 3 2 1 5 5 C 1.39386 * 120.19275 * 180.02562 * 4 3 2 6 6 O 1.35984 * 119.80430 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99955 * 179.97438 * 6 5 4 8 8 C 1.37338 * 120.39046 * 359.97037 * 5 4 3 9 9 C 1.41919 * 120.32290 * 0.02562 * 8 5 4 10 10 C 1.39798 * 128.44984 * 179.97438 * 9 8 5 11 11 C 1.36947 * 115.02842 * 180.02562 * 10 9 8 12 12 C 1.39915 * 124.82811 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99760 * 353.26473 * 12 11 10 14 14 C 1.40185 * 119.99971 * 173.26768 * 12 11 10 15 15 N 1.30759 * 119.99780 * 6.60233 * 14 12 11 16 16 Si 1.86800 * 119.99732 * 186.60659 * 14 12 11 17 17 H 1.48504 * 109.46976 * 94.98864 * 16 14 12 18 18 H 1.48505 * 109.46863 * 214.98166 * 16 14 12 19 19 H 1.48493 * 109.47242 * 334.98431 * 16 14 12 20 20 S 1.75454 * 110.34622 * 0.02562 * 11 10 9 21 21 C 1.39600 * 119.73783 * 85.00544 * 3 2 1 22 22 H 1.09000 * 109.47419 * 59.99648 * 1 2 3 23 23 H 1.09000 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46666 * 299.99528 * 1 2 3 25 25 H 1.08999 * 109.46666 * 240.00472 * 2 1 3 26 26 H 1.08995 * 109.46847 * 120.00754 * 2 1 3 27 27 H 1.08007 * 119.90121 * 0.03787 * 4 3 2 28 28 H 1.08994 * 109.47563 * 59.99537 * 7 6 5 29 29 H 1.08999 * 109.46694 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46530 * 299.99380 * 7 6 5 31 31 H 1.08000 * 119.84110 * 180.02562 * 8 5 4 32 32 H 1.07993 * 122.48432 * 0.05472 * 10 9 8 33 33 H 0.97000 * 119.99403 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3581 2.0299 -1.1903 5 6 2.8241 3.3435 -1.2010 6 8 3.1431 3.9379 -2.3818 7 6 3.6143 5.2857 -2.3232 8 6 2.9619 4.0415 -0.0263 9 6 2.6315 3.4321 1.2121 10 6 2.7060 3.9783 2.4969 11 6 2.3161 3.1392 3.5066 12 6 2.3082 3.4735 4.8652 13 1 2.7268 4.4138 5.1923 14 6 1.7572 2.5879 5.8018 15 7 1.3684 1.3974 5.4258 16 14 1.5782 3.1087 7.5868 17 1 0.2100 3.6401 7.8125 18 1 1.8057 1.9363 8.4695 19 1 2.5765 4.1632 7.8972 20 16 1.8278 1.5854 2.8542 21 6 2.1637 2.1089 1.2076 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2521 1.4885 -2.1188 28 1 4.5209 5.3278 -1.7197 29 1 3.8324 5.6384 -3.3312 30 1 2.8490 5.9188 -1.8740 31 1 3.3234 5.0590 -0.0450 32 1 3.0453 4.9871 2.6795 33 1 0.9874 0.7845 6.0740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396316496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:06 Heat of formation + Delta-G solvation = -49.327833 kcal Electronic energy + Delta-G solvation = -16926.145271 eV Core-core repulsion = 14234.271220 eV Total energy + Delta-G solvation = -2691.874051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.84574 -38.75262 -36.92955 -35.42133 -33.45646 -30.85383 -29.78101 -28.45883 -26.89807 -24.59633 -23.86430 -21.89963 -20.80402 -19.60683 -18.18648 -17.73674 -17.11921 -16.53815 -16.52325 -15.77523 -15.13364 -14.95125 -14.77898 -14.29058 -14.00678 -13.82364 -13.54247 -13.32808 -13.09661 -13.08299 -12.83799 -12.50974 -12.29685 -12.02985 -11.88876 -11.82663 -11.57643 -11.47359 -10.91525 -10.70721 -9.87042 -9.08290 -8.93408 -8.05746 -6.59650 0.26685 0.72428 1.31154 1.35205 1.47232 1.53810 1.84675 1.93602 2.14059 2.50850 2.81649 3.22308 3.96987 4.19862 4.29570 4.37987 4.38439 4.49454 4.54975 4.62977 4.72310 4.82933 4.88633 4.93804 5.04922 5.12660 5.24273 5.39152 5.45789 5.52764 5.57973 5.78176 5.91146 6.01119 6.12976 6.39467 6.54134 6.70011 7.93542 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.006336 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.195109 B = 4418.428941 C = 5426.502077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C 0.011 3.989 4 C -0.219 4.219 5 C 0.139 3.861 6 O -0.333 6.333 7 C 0.024 3.976 8 C -0.267 4.267 9 C 0.026 3.974 10 C -0.402 4.402 11 C 0.027 3.973 12 C -0.411 4.411 13 H 0.100 0.900 14 C 0.019 3.981 15 N -0.793 5.793 16 Si 1.013 2.987 17 H -0.257 1.257 18 H -0.256 1.256 19 H -0.254 1.254 20 S 0.133 5.867 21 C -0.309 4.309 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.036 0.964 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.139 0.861 28 H 0.051 0.949 29 H 0.128 0.872 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 -0.781 -4.480 4.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 C 0.006 3.994 4 C -0.239 4.239 5 C 0.092 3.908 6 O -0.247 6.247 7 C -0.071 4.071 8 C -0.288 4.288 9 C 0.019 3.981 10 C -0.427 4.427 11 C -0.093 4.093 12 C -0.444 4.444 13 H 0.118 0.882 14 C -0.201 4.201 15 N -0.419 5.419 16 Si 0.831 3.169 17 H -0.182 1.182 18 H -0.180 1.180 19 H -0.178 1.178 20 S 0.392 5.608 21 C -0.423 4.423 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.157 0.843 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.274 -2.374 -3.978 4.805 hybrid contribution 0.707 2.162 0.270 2.291 sum -0.567 -0.212 -3.708 3.757 Atomic orbital electron populations 1.21655 0.93766 1.02600 1.01508 1.20590 0.97128 0.91164 1.03014 1.19209 0.94612 0.95860 0.89690 1.19969 1.12539 0.93628 0.97797 1.18607 0.95477 0.92771 0.83952 1.85975 1.80676 1.29859 1.28176 1.23206 0.98741 0.80030 1.05116 1.20851 1.15721 1.01038 0.91170 1.18018 0.94178 0.92710 0.93241 1.19673 1.30388 1.01623 0.91001 1.21857 0.94696 0.95428 0.97270 1.19688 1.30330 1.04463 0.89952 0.88187 1.27302 0.91785 0.93402 1.07639 1.68726 1.26832 1.06439 1.39867 0.84682 0.80150 0.79562 0.72519 1.18183 1.18012 1.17753 1.84328 1.71260 1.14093 0.91120 1.23630 1.17446 0.99798 1.01395 0.92225 0.90014 0.94490 0.88817 0.91941 0.84292 0.93007 0.85397 0.93019 0.86341 0.88450 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.90 71.98 0.71 -3.51 16 2 C -0.08 -2.77 5.86 29.85 0.18 -2.59 16 3 C 0.01 0.45 5.15 -19.68 -0.10 0.35 16 4 C -0.22 -8.81 9.59 22.40 0.21 -8.60 16 5 C 0.14 5.78 6.67 22.33 0.15 5.93 16 6 O -0.33 -11.81 10.50 -93.37 -0.98 -12.79 16 7 C 0.02 0.62 9.80 113.37 1.11 1.74 16 8 C -0.27 -12.22 9.08 22.97 0.21 -12.01 16 9 C 0.03 1.37 5.85 -21.48 -0.13 1.24 16 10 C -0.40 -21.98 10.14 22.34 0.23 -21.76 16 11 C 0.03 1.47 6.10 22.37 0.14 1.61 16 12 C -0.41 -21.02 9.26 23.15 0.21 -20.80 16 13 H 0.10 4.87 7.86 -2.91 -0.02 4.85 16 14 C 0.02 0.84 5.49 85.33 0.47 1.31 16 15 N -0.79 -36.88 10.63 21.87 0.23 -36.65 16 16 Si 1.01 33.67 29.57 68.60 2.03 35.70 16 17 H -0.26 -8.29 7.11 99.48 0.71 -7.59 16 18 H -0.26 -7.89 7.11 99.48 0.71 -7.18 16 19 H -0.25 -8.29 7.11 99.48 0.71 -7.59 16 20 S 0.13 6.74 19.53 -56.49 -1.10 5.64 16 21 C -0.31 -15.35 6.30 23.11 0.15 -15.21 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.09 2.61 8.04 -2.39 -0.02 2.60 16 26 H 0.06 2.21 7.74 -2.39 -0.02 2.19 16 27 H 0.14 4.75 8.05 -2.91 -0.02 4.73 16 28 H 0.05 1.36 7.64 -2.39 -0.02 1.34 16 29 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 1.36 7.64 -2.38 -0.02 1.34 16 31 H 0.12 4.93 6.21 -2.91 -0.02 4.91 16 32 H 0.10 5.18 8.06 -2.91 -0.02 5.16 16 33 H 0.31 12.73 8.29 -92.71 -0.77 11.96 16 Total: -1.00 -61.22 292.85 4.82 -56.40 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 1.11 Total: 24.01 kcal Atomic # 6 Polarization: -75.84 SS G_CDS: 3.54 Total: -72.30 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.23 Total: -36.65 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.98 Total: -12.79 kcal Atomic # 14 Polarization: 33.67 SS G_CDS: 2.03 Total: 35.70 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -1.10 Total: 5.64 kcal Total: -61.22 4.82 -56.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.070 kcal (2) G-P(sol) polarization free energy of solvation -61.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds