Wall clock time and date at job start Mon Mar 30 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46873 * 2 1 4 4 C 1.31861 * 122.55985 * 264.97581 * 3 2 1 5 5 S 1.75306 * 111.34448 * 180.02562 * 4 3 2 6 6 C 1.75893 * 92.17136 * 0.02562 * 5 4 3 7 7 C 1.39426 * 109.76749 * 359.97438 * 6 5 4 8 8 C 1.41347 * 118.99188 * 180.25186 * 7 6 5 9 9 C 1.37794 * 120.90332 * 359.48629 * 8 7 6 10 10 C 1.37888 * 120.76194 * 0.52478 * 9 8 7 11 11 C 1.50700 * 120.05720 * 179.71521 * 10 9 8 12 12 O 1.42899 * 109.46970 * 2.65276 * 11 10 9 13 13 C 1.40409 * 119.88304 * 359.73737 * 10 9 8 14 14 C 1.40929 * 120.11428 * 180.02562 * 13 10 9 15 15 H 1.07999 * 120.00234 * 39.25713 * 14 13 10 16 16 C 1.39928 * 119.99811 * 219.25583 * 14 13 10 17 17 N 1.30864 * 119.99925 * 20.68889 * 16 14 13 18 18 Si 1.86807 * 119.99745 * 200.68861 * 16 14 13 19 19 H 1.48500 * 109.46949 * 90.00194 * 18 16 14 20 20 H 1.48498 * 109.46936 * 210.00072 * 18 16 14 21 21 H 1.48498 * 109.47005 * 330.00444 * 18 16 14 22 22 H 1.09004 * 109.47042 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47087 * 299.99889 * 1 2 3 24 24 H 1.09000 * 109.47105 * 59.99984 * 1 2 3 25 25 H 1.08996 * 109.47371 * 240.00580 * 2 1 3 26 26 H 1.08995 * 109.47479 * 119.99712 * 2 1 3 27 27 H 1.08002 * 124.32893 * 0.04059 * 4 3 2 28 28 H 1.08000 * 119.54911 * 179.97438 * 8 7 6 29 29 H 1.08001 * 119.62138 * 180.23546 * 9 8 7 30 30 H 1.08998 * 109.47046 * 122.65607 * 11 10 9 31 31 H 1.08999 * 109.47054 * 242.65580 * 11 10 9 32 32 H 0.96703 * 113.99868 * 179.97438 * 12 11 10 33 33 H 0.97006 * 119.99585 * 174.41807 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0575 -1.1071 5 16 2.9062 3.6884 -0.7674 6 6 2.6717 3.4781 0.9631 7 6 2.1929 2.1944 1.2215 8 6 1.9300 1.8174 2.5581 9 6 2.1505 2.6949 3.5974 10 6 2.6236 3.9676 3.3574 11 6 2.8531 4.9165 4.5054 12 8 2.5692 4.2508 5.7376 13 6 2.8908 4.3781 2.0415 14 6 3.3750 5.6776 1.7907 15 1 4.1012 6.1210 2.4558 16 6 2.9148 6.3934 0.6799 17 7 1.7813 6.0655 0.1140 18 14 3.9184 7.8171 0.0050 19 1 4.8635 7.3127 -1.0234 20 1 3.0082 8.8178 -0.6075 21 1 4.6813 8.4523 1.1094 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.3007 1.6290 -2.0967 28 1 1.5585 0.8253 2.7685 29 1 1.9460 2.3838 4.6112 30 1 3.8918 5.2468 4.5017 31 1 2.1968 5.7803 4.3996 32 1 2.6962 4.8030 6.5213 33 1 1.4222 6.6103 -0.6038 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:25 Heat of formation + Delta-G solvation = -49.275091 kcal Electronic energy + Delta-G solvation = -17347.965269 eV Core-core repulsion = 14656.093505 eV Total energy + Delta-G solvation = -2691.871763 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11141 -38.02171 -36.71747 -35.20939 -32.75153 -31.87778 -30.16722 -27.43509 -26.29619 -24.75538 -22.94415 -22.11010 -20.10869 -19.01280 -18.17075 -17.78367 -16.79372 -15.95598 -15.82741 -15.63100 -15.53179 -14.89405 -14.75912 -14.31696 -14.17045 -13.56425 -13.41394 -13.22406 -12.95037 -12.81593 -12.69966 -12.39075 -12.11663 -11.95375 -11.70896 -11.66231 -11.30223 -11.14509 -10.87465 -10.66885 -9.86228 -8.89896 -8.73950 -7.93263 -6.40748 0.26668 0.95267 1.23834 1.35930 1.40350 1.46801 1.75884 1.79830 2.18613 2.73516 3.45604 3.60256 3.98207 4.17598 4.35331 4.44943 4.52804 4.58356 4.75246 4.80572 4.83479 4.86610 5.00808 5.08701 5.13965 5.22727 5.39005 5.44511 5.57113 5.63238 5.83290 5.94363 6.09920 6.30841 6.49284 6.83300 6.89907 7.07134 8.30673 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.010381 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.900671 B = 2696.604004 C = 4244.777324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 C -0.102 4.102 4 C -0.231 4.231 5 S 0.072 5.928 6 C -0.191 4.191 7 C -0.071 4.071 8 C -0.201 4.201 9 C -0.075 4.075 10 C -0.212 4.212 11 C 0.160 3.840 12 O -0.584 6.584 13 C 0.126 3.874 14 C -0.506 4.506 15 H 0.084 0.916 16 C 0.043 3.957 17 N -0.799 5.799 18 Si 0.957 3.043 19 H -0.265 1.265 20 H -0.267 1.267 21 H -0.255 1.255 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.177 0.823 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.393 0.607 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -4.334 -0.160 4.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 C -0.116 4.116 4 C -0.365 4.365 5 S 0.339 5.661 6 C -0.307 4.307 7 C -0.078 4.078 8 C -0.222 4.222 9 C -0.094 4.094 10 C -0.217 4.217 11 C 0.083 3.917 12 O -0.392 6.392 13 C 0.121 3.879 14 C -0.535 4.535 15 H 0.102 0.898 16 C -0.174 4.174 17 N -0.425 5.425 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.191 1.191 21 H -0.178 1.178 22 H 0.100 0.900 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.195 0.805 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.242 0.758 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.467 -3.600 -1.796 4.050 hybrid contribution -0.122 0.317 0.932 0.992 sum 0.344 -3.282 -0.864 3.412 Atomic orbital electron populations 1.21675 0.94425 1.02289 1.01212 1.20257 0.96303 0.89957 1.03095 1.19958 1.02813 0.98237 0.90597 1.25365 1.09295 0.99486 1.02354 1.83597 1.70422 1.10420 1.01672 1.22829 1.13966 0.97121 0.96831 1.19376 1.01209 0.92861 0.94392 1.20547 1.11143 1.00241 0.90264 1.20454 0.97738 0.93146 0.98070 1.19846 1.11402 0.96896 0.93571 1.20266 0.97876 0.92074 0.81506 1.86375 1.92169 1.44182 1.16437 1.16926 0.89511 0.92437 0.89030 1.19495 1.24210 0.99863 1.09943 0.89793 1.26457 0.95123 1.01228 0.94611 1.69813 1.16084 1.36401 1.20170 0.85543 0.79396 0.77773 0.79464 1.18958 1.19124 1.17848 0.90042 0.94362 0.93234 0.89472 0.91035 0.80541 0.86371 0.86250 0.93593 0.94046 0.75769 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.89 71.98 0.71 -3.10 16 2 C -0.06 -1.70 6.05 29.85 0.18 -1.52 16 3 C -0.10 -4.11 5.23 -18.81 -0.10 -4.21 16 4 C -0.23 -9.14 10.74 67.01 0.72 -8.42 16 5 S 0.07 3.38 19.91 -56.49 -1.12 2.25 16 6 C -0.19 -10.04 5.74 23.53 0.14 -9.91 16 7 C -0.07 -3.38 6.01 -20.36 -0.12 -3.50 16 8 C -0.20 -9.12 9.81 22.93 0.22 -8.90 16 9 C -0.07 -3.48 9.32 22.08 0.21 -3.27 16 10 C -0.21 -10.52 5.93 -19.42 -0.12 -10.64 16 11 C 0.16 6.61 6.41 71.24 0.46 7.07 16 12 O -0.58 -20.48 12.13 -148.98 -1.81 -22.29 16 13 C 0.13 6.79 5.36 -21.12 -0.11 6.68 16 14 C -0.51 -26.44 8.11 23.34 0.19 -26.25 16 15 H 0.08 4.22 7.32 -2.91 -0.02 4.20 16 16 C 0.04 2.14 4.27 85.25 0.36 2.51 16 17 N -0.80 -41.27 10.71 21.83 0.23 -41.03 16 18 Si 0.96 38.04 29.61 68.60 2.03 40.07 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 20 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 23 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 2.17 8.09 -2.39 -0.02 2.15 16 26 H 0.07 2.08 7.82 -2.39 -0.02 2.07 16 27 H 0.18 5.58 8.06 -2.91 -0.02 5.56 16 28 H 0.12 4.63 7.79 -2.91 -0.02 4.61 16 29 H 0.12 5.12 6.98 -2.91 -0.02 5.10 16 30 H 0.05 1.82 7.72 -2.39 -0.02 1.81 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.39 8.96 9.12 -74.05 -0.68 8.28 16 33 H 0.29 13.80 8.31 -92.70 -0.77 13.03 16 Total: -1.00 -62.41 290.34 2.53 -59.89 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.45 Total: 24.57 kcal Atomic # 6 Polarization: -66.20 SS G_CDS: 2.74 Total: -63.46 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.23 Total: -41.03 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.81 Total: -22.29 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.12 Total: 2.25 kcal Total: -62.41 2.53 -59.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.612 kcal (2) G-P(sol) polarization free energy of solvation -62.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds