Wall clock time and date at job start Mon Mar 30 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46924 * 2 1 4 4 S 1.69984 * 124.02042 * 269.35746 * 3 2 1 5 5 C 1.75787 * 93.23075 * 179.97438 * 4 3 2 6 6 C 1.39842 * 130.19801 * 180.02562 * 5 4 3 7 7 C 1.37604 * 120.36804 * 180.30239 * 6 5 4 8 8 C 1.38670 * 120.19128 * 359.97438 * 7 6 5 9 9 C 1.37430 * 120.26762 * 0.02562 * 8 7 6 10 10 C 1.50688 * 119.84317 * 179.97438 * 9 8 7 11 11 O 1.42899 * 109.47295 * 359.97438 * 10 9 8 12 12 C 1.39342 * 110.18531 * 0.30102 * 5 4 3 13 13 C 1.36433 * 124.02336 * 89.65727 * 3 2 1 14 14 C 1.40807 * 123.29681 * 359.97438 * 13 3 2 15 15 H 1.07999 * 120.00298 * 229.08548 * 14 13 3 16 16 C 1.39725 * 120.00152 * 49.08650 * 14 13 3 17 17 N 1.31066 * 119.99901 * 20.51273 * 16 14 13 18 18 Si 1.86794 * 120.00186 * 200.51272 * 16 14 13 19 19 H 1.48501 * 109.47405 * 60.00138 * 18 16 14 20 20 H 1.48504 * 109.47065 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47434 * 299.99912 * 18 16 14 22 22 H 1.09001 * 109.47295 * 59.99894 * 1 2 3 23 23 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47279 * 299.99808 * 1 2 3 25 25 H 1.08992 * 109.47114 * 119.99508 * 2 1 3 26 26 H 1.08999 * 109.47279 * 240.00192 * 2 1 3 27 27 H 1.07997 * 119.81280 * 0.27399 * 6 5 4 28 28 H 1.07996 * 119.90557 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.86867 * 180.02562 * 8 7 6 30 30 H 1.09005 * 109.47406 * 119.97714 * 10 9 8 31 31 H 1.08996 * 109.47679 * 239.97654 * 10 9 8 32 32 H 0.96707 * 114.00289 * 180.02562 * 11 10 9 33 33 H 0.97001 * 120.00325 * 174.34665 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3642 2.3122 -1.4088 5 6 2.8573 3.7396 -0.5090 6 6 3.3019 4.9847 -0.9646 7 6 3.6460 5.9709 -0.0687 8 6 3.5538 5.7373 1.2950 9 6 3.1188 4.5199 1.7614 10 6 3.0228 4.2762 3.2454 11 8 3.4353 5.4499 3.9485 12 6 2.7636 3.5008 0.8606 13 6 2.2804 2.1428 1.1307 14 6 2.0916 1.6337 2.4299 15 1 1.5401 2.2075 3.1600 16 6 2.6178 0.3861 2.7747 17 7 3.5977 -0.1285 2.0727 18 14 1.9246 -0.5485 4.2360 19 1 0.4814 -0.8173 4.0124 20 1 2.6494 -1.8356 4.3893 21 1 2.0918 0.2641 5.4677 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.3761 5.1731 -2.0254 28 1 3.9881 6.9299 -0.4288 29 1 3.8248 6.5152 1.9935 30 1 1.9921 4.0383 3.5086 31 1 3.6693 3.4426 3.5193 32 1 3.3993 5.3647 4.9112 33 1 4.0180 -0.9545 2.3592 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:34 Heat of formation + Delta-G solvation = -26.123466 kcal Electronic energy + Delta-G solvation = -17569.417219 eV Core-core repulsion = 14878.549385 eV Total energy + Delta-G solvation = -2690.867834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85655 -36.17444 -35.56769 -32.38843 -31.76576 -30.78785 -27.93892 -26.29006 -24.76211 -22.68929 -21.79339 -20.05090 -19.06739 -17.10545 -16.47683 -16.15362 -15.17332 -14.63306 -14.31406 -14.27852 -13.89592 -13.34671 -12.95622 -12.79564 -12.57881 -12.20651 -11.68135 -11.45020 -11.38971 -11.20851 -11.05123 -10.69072 -10.40787 -10.29887 -10.03998 -9.90519 -9.86067 -9.53133 -9.34488 -8.68642 -8.19096 -7.25733 -6.69673 -6.36740 -4.35227 1.85043 2.06674 2.78885 2.97462 3.08813 3.12582 3.61162 3.67782 4.00438 4.52216 4.75260 5.02840 5.56655 5.61130 5.83069 6.05983 6.12809 6.16065 6.18433 6.31093 6.34681 6.47102 6.64640 6.73858 6.76217 6.99517 7.09101 7.13152 7.22211 7.26204 7.36567 7.57409 7.77048 7.92683 8.09606 8.43353 8.76617 8.90633 10.34902 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.010534 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.473005 B = 2657.343045 C = 3995.194953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 C -0.288 4.288 4 S 0.041 5.959 5 C -0.142 4.142 6 C -0.099 4.099 7 C -0.128 4.128 8 C -0.124 4.124 9 C -0.044 4.044 10 C 0.123 3.877 11 O -0.582 6.582 12 C -0.055 4.055 13 C 0.103 3.897 14 C -0.472 4.472 15 H 0.078 0.922 16 C 0.085 3.915 17 N -0.805 5.805 18 Si 0.890 3.110 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.269 1.269 22 H 0.039 0.961 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.033 0.967 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.374 0.626 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 4.145 0.199 4.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.404 4.404 4 S 0.306 5.694 5 C -0.257 4.257 6 C -0.122 4.122 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.045 4.045 10 C 0.046 3.954 11 O -0.387 6.387 12 C -0.064 4.064 13 C 0.094 3.906 14 C -0.506 4.506 15 H 0.095 0.905 16 C -0.129 4.129 17 N -0.433 5.433 18 Si 0.715 3.285 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.193 1.193 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.220 0.780 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.385 3.673 -1.991 4.402 hybrid contribution -0.077 -0.509 2.682 2.731 sum -1.462 3.164 0.691 3.554 Atomic orbital electron populations 1.21717 0.97382 0.99228 1.01285 1.19774 0.93163 0.91758 1.01928 1.23041 1.21230 1.02363 0.93800 1.81870 1.72348 1.03759 1.11422 1.22503 1.07506 0.98489 0.97228 1.20338 1.01458 0.91796 0.98656 1.20745 1.02559 0.98306 0.93266 1.20607 1.01988 0.96946 0.94935 1.19393 0.98875 0.92818 0.93461 1.21061 0.99352 0.86050 0.88903 1.86369 1.90659 1.39441 1.22266 1.19636 0.99908 0.95737 0.91142 1.17116 0.92419 0.87114 0.93939 1.18616 1.33778 1.01776 0.96423 0.90453 1.25534 0.93824 0.96575 0.96979 1.69897 1.17132 1.19194 1.37046 0.86661 0.80573 0.79279 0.81958 1.18852 1.20544 1.19344 0.94140 0.94548 0.92491 0.88713 0.94834 0.87123 0.86735 0.85822 0.91983 0.90905 0.77998 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.89 37.16 0.37 -2.38 16 2 C -0.03 -0.60 5.79 -27.88 -0.16 -0.77 16 3 C -0.29 -6.99 5.22 -34.96 -0.18 -7.17 16 4 S 0.04 0.90 22.89 -107.50 -2.46 -1.56 16 5 C -0.14 -3.20 6.44 -38.57 -0.25 -3.44 16 6 C -0.10 -1.92 10.07 -39.21 -0.39 -2.31 16 7 C -0.13 -2.32 10.03 -39.65 -0.40 -2.71 16 8 C -0.12 -2.41 9.35 -39.72 -0.37 -2.79 16 9 C -0.04 -0.95 5.93 -104.04 -0.62 -1.57 16 10 C 0.12 2.39 5.84 36.00 0.21 2.60 16 11 O -0.58 -9.65 12.11 -35.23 -0.43 -10.07 16 12 C -0.05 -1.31 5.99 -105.21 -0.63 -1.94 16 13 C 0.10 2.61 5.24 -106.18 -0.56 2.05 16 14 C -0.47 -11.66 6.92 -38.06 -0.26 -11.92 16 15 H 0.08 1.84 6.27 -52.49 -0.33 1.51 16 16 C 0.09 2.06 3.67 -17.32 -0.06 1.99 16 17 N -0.80 -20.43 11.46 55.54 0.64 -19.79 16 18 Si 0.89 18.29 29.61 -169.99 -5.03 13.25 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.09 2.31 4.46 -51.93 -0.23 2.08 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.12 2.23 6.96 -52.49 -0.37 1.87 16 30 H 0.06 1.20 6.74 -51.93 -0.35 0.85 16 31 H 0.07 1.51 7.60 -51.93 -0.39 1.12 16 32 H 0.37 4.27 9.12 45.56 0.42 4.69 16 33 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 285.91 15.07 4.31 4.31 Total: -1.00 -27.72 285.91 -9.21 -36.93 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -2.93 Total: 7.28 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -3.31 Total: -30.35 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.64 Total: -19.79 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.43 Total: -10.07 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.46 Total: -1.56 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.72 -9.21 -36.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.808 kcal (2) G-P(sol) polarization free energy of solvation -27.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds