Wall clock time and date at job start Mon Mar 30 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46924 * 2 1 4 4 S 1.69984 * 124.02042 * 269.35746 * 3 2 1 5 5 C 1.75787 * 93.23075 * 179.97438 * 4 3 2 6 6 C 1.39842 * 130.19801 * 180.02562 * 5 4 3 7 7 C 1.37604 * 120.36804 * 180.30239 * 6 5 4 8 8 C 1.38670 * 120.19128 * 359.97438 * 7 6 5 9 9 C 1.37430 * 120.26762 * 0.02562 * 8 7 6 10 10 C 1.50688 * 119.84317 * 179.97438 * 9 8 7 11 11 O 1.42899 * 109.47295 * 359.97438 * 10 9 8 12 12 C 1.39342 * 110.18531 * 0.30102 * 5 4 3 13 13 C 1.36433 * 124.02336 * 89.65727 * 3 2 1 14 14 C 1.40807 * 123.29681 * 359.97438 * 13 3 2 15 15 H 1.07999 * 120.00298 * 229.08548 * 14 13 3 16 16 C 1.39725 * 120.00152 * 49.08650 * 14 13 3 17 17 N 1.31066 * 119.99901 * 20.51273 * 16 14 13 18 18 Si 1.86794 * 120.00186 * 200.51272 * 16 14 13 19 19 H 1.48501 * 109.47405 * 60.00138 * 18 16 14 20 20 H 1.48504 * 109.47065 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47434 * 299.99912 * 18 16 14 22 22 H 1.09001 * 109.47295 * 59.99894 * 1 2 3 23 23 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47279 * 299.99808 * 1 2 3 25 25 H 1.08992 * 109.47114 * 119.99508 * 2 1 3 26 26 H 1.08999 * 109.47279 * 240.00192 * 2 1 3 27 27 H 1.07997 * 119.81280 * 0.27399 * 6 5 4 28 28 H 1.07996 * 119.90557 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.86867 * 180.02562 * 8 7 6 30 30 H 1.09005 * 109.47406 * 119.97714 * 10 9 8 31 31 H 1.08996 * 109.47679 * 239.97654 * 10 9 8 32 32 H 0.96707 * 114.00289 * 180.02562 * 11 10 9 33 33 H 0.97001 * 120.00325 * 174.34665 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3642 2.3122 -1.4088 5 6 2.8573 3.7396 -0.5090 6 6 3.3019 4.9847 -0.9646 7 6 3.6460 5.9709 -0.0687 8 6 3.5538 5.7373 1.2950 9 6 3.1188 4.5199 1.7614 10 6 3.0228 4.2762 3.2454 11 8 3.4353 5.4499 3.9485 12 6 2.7636 3.5008 0.8606 13 6 2.2804 2.1428 1.1307 14 6 2.0916 1.6337 2.4299 15 1 1.5401 2.2075 3.1600 16 6 2.6178 0.3861 2.7747 17 7 3.5977 -0.1285 2.0727 18 14 1.9246 -0.5485 4.2360 19 1 0.4814 -0.8173 4.0124 20 1 2.6494 -1.8356 4.3893 21 1 2.0918 0.2641 5.4677 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.3761 5.1731 -2.0254 28 1 3.9881 6.9299 -0.4288 29 1 3.8248 6.5152 1.9935 30 1 1.9921 4.0383 3.5086 31 1 3.6693 3.4426 3.5193 32 1 3.3993 5.3647 4.9112 33 1 4.0180 -0.9545 2.3592 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:34 Heat of formation + Delta-G solvation = -41.832073 kcal Electronic energy + Delta-G solvation = -17570.098395 eV Core-core repulsion = 14878.549385 eV Total energy + Delta-G solvation = -2691.549010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.45024 -37.66525 -37.20172 -34.18060 -33.41561 -32.32759 -29.62480 -27.99164 -26.37149 -24.36445 -23.42471 -21.65874 -20.81673 -18.71869 -18.07479 -17.74691 -16.85692 -16.30624 -15.88770 -15.81319 -15.51515 -14.86597 -14.60689 -14.43633 -14.23127 -13.81374 -13.28472 -13.12213 -13.00272 -12.88414 -12.70885 -12.31378 -11.99351 -11.97279 -11.66871 -11.59887 -11.39172 -11.15855 -11.03667 -10.46475 -9.82545 -8.94029 -8.51125 -8.09961 -6.21043 0.22136 0.46934 1.12248 1.32414 1.42440 1.48845 1.84224 1.95312 2.29134 2.85854 3.22617 3.40228 4.07080 4.19991 4.25989 4.46610 4.52395 4.60220 4.62395 4.72033 4.78237 4.79097 5.03678 5.10690 5.23103 5.34386 5.36375 5.47540 5.58335 5.62810 5.74931 5.81435 6.10244 6.20709 6.60246 6.93083 6.95537 7.06514 8.55479 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.010534 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.473005 B = 2657.343045 C = 3995.194953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.029 4.029 3 C -0.310 4.310 4 S 0.057 5.943 5 C -0.163 4.163 6 C -0.103 4.103 7 C -0.114 4.114 8 C -0.122 4.122 9 C -0.069 4.069 10 C 0.138 3.862 11 O -0.581 6.581 12 C -0.092 4.092 13 C 0.077 3.923 14 C -0.487 4.487 15 H 0.076 0.924 16 C 0.054 3.946 17 N -0.840 5.840 18 Si 0.948 3.052 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.259 1.259 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.141 0.859 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.397 0.603 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 5.557 0.171 5.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.069 4.069 3 C -0.426 4.426 4 S 0.321 5.679 5 C -0.278 4.278 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.143 4.143 9 C -0.071 4.071 10 C 0.061 3.939 11 O -0.390 6.390 12 C -0.101 4.101 13 C 0.067 3.933 14 C -0.521 4.521 15 H 0.094 0.906 16 C -0.157 4.157 17 N -0.469 5.469 18 Si 0.771 3.229 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.184 1.184 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.158 0.842 28 H 0.178 0.822 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.247 0.753 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.471 5.102 -1.996 5.672 hybrid contribution 0.000 -0.793 2.656 2.772 sum -1.470 4.309 0.660 4.600 Atomic orbital electron populations 1.21616 0.95315 1.00736 1.00977 1.19782 0.94990 0.91081 1.01012 1.23368 1.21340 1.03070 0.94862 1.81540 1.72492 1.03587 1.10232 1.22862 1.08295 0.99756 0.96913 1.20763 1.00533 0.90690 1.00610 1.21257 1.00226 0.99609 0.92333 1.20932 1.00781 0.96319 0.96241 1.19724 0.99624 0.93424 0.94320 1.20684 0.98541 0.86209 0.88463 1.86303 1.90399 1.37916 1.24340 1.19852 1.01713 0.96028 0.92508 1.17496 0.92940 0.88345 0.94507 1.18759 1.34204 1.02512 0.96597 0.90639 1.26129 0.93492 0.96798 0.99284 1.69970 1.18422 1.19712 1.38846 0.85758 0.79681 0.78112 0.79336 1.18750 1.20261 1.18352 0.93280 0.92107 0.93855 0.90502 0.94801 0.84154 0.82219 0.84095 0.92478 0.93043 0.75310 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.89 71.98 0.71 -4.36 16 2 C -0.03 -1.34 5.79 29.85 0.17 -1.16 16 3 C -0.31 -15.35 5.22 25.26 0.13 -15.22 16 4 S 0.06 2.50 22.89 -56.49 -1.29 1.21 16 5 C -0.16 -7.25 6.44 22.92 0.15 -7.10 16 6 C -0.10 -3.72 10.07 22.51 0.23 -3.49 16 7 C -0.11 -3.71 10.03 22.22 0.22 -3.48 16 8 C -0.12 -4.48 9.35 22.18 0.21 -4.27 16 9 C -0.07 -2.99 5.93 -19.49 -0.12 -3.10 16 10 C 0.14 5.39 5.84 71.23 0.42 5.81 16 11 O -0.58 -18.32 12.11 -148.98 -1.80 -20.12 16 12 C -0.09 -4.44 5.99 -20.24 -0.12 -4.57 16 13 C 0.08 3.97 5.24 -20.88 -0.11 3.86 16 14 C -0.49 -24.72 6.92 23.26 0.16 -24.56 16 15 H 0.08 3.72 6.27 -2.91 -0.02 3.70 16 16 C 0.05 2.67 3.67 85.17 0.31 2.98 16 17 N -0.84 -43.85 11.46 21.80 0.25 -43.60 16 18 Si 0.95 37.88 29.61 68.60 2.03 39.91 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 20 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.08 3.84 4.46 -2.39 -0.01 3.83 16 26 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 28 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 29 H 0.14 4.64 6.96 -2.91 -0.02 4.62 16 30 H 0.06 2.25 6.74 -2.38 -0.02 2.23 16 31 H 0.05 2.21 7.60 -2.39 -0.02 2.19 16 32 H 0.40 8.31 9.12 -74.05 -0.68 7.64 16 33 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -60.31 285.91 2.02 -58.29 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.47 Total: 22.99 kcal Atomic # 6 Polarization: -61.04 SS G_CDS: 2.37 Total: -58.68 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.25 Total: -43.60 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.80 Total: -20.12 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.29 Total: 1.21 kcal Total: -60.31 2.02 -58.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.458 kcal (2) G-P(sol) polarization free energy of solvation -60.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds