Wall clock time and date at job start Mon Mar 30 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47053 * 2 1 4 4 C 1.32535 * 122.05698 * 264.71057 * 3 2 1 5 5 S 1.75481 * 110.83277 * 179.89957 * 4 3 2 6 6 C 1.76050 * 91.54796 * 0.30901 * 5 4 3 7 7 C 1.38878 * 130.45192 * 179.80960 * 6 5 4 8 8 C 1.40361 * 119.96504 * 180.02562 * 7 6 5 9 9 C 1.40995 * 120.20319 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00175 * 205.19360 * 9 8 7 11 11 C 1.39880 * 119.99812 * 25.19468 * 9 8 7 12 12 N 1.30892 * 120.00236 * 17.55113 * 11 9 8 13 13 Si 1.86801 * 120.00228 * 197.55348 * 11 9 8 14 14 H 1.48504 * 109.46795 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46860 * 119.99737 * 13 11 9 16 16 H 1.48496 * 109.47690 * 239.99991 * 13 11 9 17 17 C 1.41265 * 119.59304 * 0.02562 * 8 7 6 18 18 C 1.50706 * 119.80232 * 180.02562 * 17 8 7 19 19 O 1.42896 * 109.47403 * 180.02562 * 18 17 8 20 20 C 1.35185 * 120.39416 * 0.02562 * 17 8 7 21 21 C 1.40347 * 109.37778 * 359.82900 * 6 5 4 22 22 H 1.09002 * 109.47154 * 60.00072 * 1 2 3 23 23 H 1.09003 * 109.47125 * 299.99942 * 1 2 3 24 24 H 1.08996 * 109.47129 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46673 * 120.00139 * 2 1 3 26 26 H 1.09001 * 109.46700 * 239.99744 * 2 1 3 27 27 H 1.08000 * 124.58159 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.01745 * 359.97438 * 7 6 5 29 29 H 0.96998 * 120.00304 * 179.97438 * 12 11 9 30 30 H 1.08993 * 109.46888 * 300.02216 * 18 17 8 31 31 H 1.08999 * 109.46888 * 60.01690 * 18 17 8 32 32 H 0.96692 * 114.00033 * 179.97438 * 19 18 17 33 33 H 1.08008 * 119.56453 * 179.97438 * 20 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3645 2.0495 -1.1185 5 16 2.9058 3.6838 -0.7786 6 6 2.6642 3.4554 0.9502 7 6 2.8738 4.3256 2.0120 8 6 2.6043 3.9077 3.3246 9 6 2.8148 4.7872 4.4063 10 1 3.0078 4.3931 5.3931 11 6 2.7737 6.1703 4.2014 12 7 2.2143 6.6557 3.1221 13 14 3.5172 7.3248 5.4678 14 1 4.0841 6.5316 6.5881 15 1 4.5950 8.1263 4.8344 16 1 2.4644 8.2340 5.9874 17 6 2.1208 2.6006 3.5552 18 6 1.8293 2.1472 4.9626 19 8 1.3556 0.7992 4.9403 20 6 1.9180 1.7540 2.5210 21 6 2.1830 2.1582 1.1858 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.3075 1.6154 -2.1058 28 1 3.2448 5.3230 1.8280 29 1 2.1855 7.6148 2.9802 30 1 2.7405 2.2022 5.5580 31 1 1.0687 2.7925 5.4019 32 1 1.1479 0.4409 5.8141 33 1 1.5484 0.7574 2.7127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:27 Heat of formation + Delta-G solvation = -34.346751 kcal Electronic energy + Delta-G solvation = -17175.552902 eV Core-core repulsion = 14484.328480 eV Total energy + Delta-G solvation = -2691.224422 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.69294 -36.57580 -35.42329 -33.41912 -31.52024 -29.56962 -29.01131 -25.87695 -24.59887 -23.45128 -21.57335 -20.16919 -18.20890 -17.63289 -16.80233 -16.22031 -15.21599 -14.39451 -14.33931 -14.16041 -13.80732 -13.44495 -13.14210 -12.73362 -12.50678 -12.07920 -11.86663 -11.76943 -11.38856 -11.28897 -11.14706 -10.96629 -10.69825 -10.43193 -10.11840 -9.97646 -9.76335 -9.48242 -9.36482 -9.09159 -8.27815 -7.29034 -6.97412 -6.56948 -4.51027 1.95304 2.74018 2.76914 2.87622 2.96769 3.00954 3.16145 3.51558 3.76137 4.45277 4.90626 5.36509 5.48198 5.51087 5.80664 5.84328 6.00532 6.12928 6.18142 6.24894 6.30831 6.35643 6.39755 6.61665 6.81236 6.87395 7.00140 7.06148 7.27823 7.33135 7.63785 7.73119 7.86522 7.99630 8.22229 8.34095 8.61126 8.69857 9.93938 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.007543 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.550463 B = 3711.068862 C = 4914.873410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.036 4.036 4 C -0.267 4.267 5 S -0.009 6.009 6 C -0.069 4.069 7 C -0.160 4.160 8 C 0.133 3.867 9 C -0.444 4.444 10 H 0.085 0.915 11 C 0.074 3.926 12 N -0.773 5.773 13 Si 0.911 3.089 14 H -0.258 1.258 15 H -0.269 1.269 16 H -0.272 1.272 17 C -0.178 4.178 18 C 0.140 3.860 19 O -0.577 6.577 20 C -0.027 4.027 21 C -0.204 4.204 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.142 0.858 28 H 0.124 0.876 29 H 0.285 0.715 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.368 0.632 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -5.514 0.334 5.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.048 4.048 4 C -0.400 4.400 5 S 0.253 5.747 6 C -0.184 4.184 7 C -0.186 4.186 8 C 0.127 3.873 9 C -0.473 4.473 10 H 0.103 0.897 11 C -0.147 4.147 12 N -0.396 5.396 13 Si 0.734 3.266 14 H -0.182 1.182 15 H -0.194 1.194 16 H -0.197 1.197 17 C -0.180 4.180 18 C 0.063 3.937 19 O -0.381 6.381 20 C -0.047 4.047 21 C -0.209 4.209 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.160 0.840 28 H 0.141 0.859 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.213 0.787 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.289 -4.057 -1.431 4.312 hybrid contribution -0.280 -0.402 1.818 1.883 sum -0.568 -4.459 0.387 4.511 Atomic orbital electron populations 1.21689 0.95258 1.00674 1.02313 1.20256 0.95739 0.92873 1.01679 1.18534 0.98451 0.95764 0.92015 1.24283 1.16712 0.98346 1.00656 1.83596 1.74260 1.14284 1.02603 1.22321 1.03774 0.97362 0.94901 1.20490 1.08815 0.99269 0.90060 1.17173 0.87618 0.89938 0.92554 1.19612 1.41013 0.90492 0.96159 0.89682 1.26006 0.92781 0.99525 0.96400 1.69864 1.29112 1.15429 1.25202 0.86208 0.79648 0.79795 0.80909 1.18159 1.19410 1.19724 1.19161 1.09333 0.96480 0.93023 1.20660 0.96722 0.80842 0.95481 1.86455 1.88372 1.29887 1.33407 1.20032 0.96707 0.98017 0.89940 1.17614 1.15885 0.94204 0.93208 0.93012 0.92238 0.93162 0.91330 0.92110 0.84032 0.85870 0.90343 0.93786 0.93275 0.78663 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.90 37.16 0.37 -1.78 16 2 C -0.07 -1.09 5.91 -27.88 -0.16 -1.25 16 3 C -0.04 -0.74 5.07 -105.70 -0.54 -1.27 16 4 C -0.27 -5.31 10.79 28.82 0.31 -5.00 16 5 S -0.01 -0.20 23.29 -107.50 -2.50 -2.71 16 6 C -0.07 -1.71 6.46 -38.55 -0.25 -1.96 16 7 C -0.16 -4.19 8.71 -38.55 -0.34 -4.52 16 8 C 0.13 3.40 5.56 -106.90 -0.59 2.80 16 9 C -0.44 -10.82 8.47 -37.92 -0.32 -11.14 16 10 H 0.09 1.93 6.98 -52.49 -0.37 1.57 16 11 C 0.07 1.73 5.13 -17.34 -0.09 1.64 16 12 N -0.77 -19.06 10.98 55.54 0.61 -18.45 16 13 Si 0.91 17.37 29.59 -169.99 -5.03 12.34 16 14 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 15 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 16 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 17 C -0.18 -4.21 5.88 -104.56 -0.61 -4.82 16 18 C 0.14 2.72 6.22 36.01 0.22 2.94 16 19 O -0.58 -9.94 12.07 -35.23 -0.43 -10.36 16 20 C -0.03 -0.62 8.95 -39.23 -0.35 -0.97 16 21 C -0.20 -4.80 5.87 -106.83 -0.63 -5.43 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.13 7.54 -51.93 -0.39 0.74 16 26 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 27 H 0.14 2.40 8.06 -52.49 -0.42 1.97 16 28 H 0.12 3.33 6.18 -52.49 -0.32 3.00 16 29 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 30 H 0.04 0.81 7.78 -51.93 -0.40 0.41 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.37 4.21 9.12 45.56 0.42 4.63 16 33 H 0.11 2.35 6.34 -52.48 -0.33 2.02 16 LS Contribution 291.10 15.07 4.39 4.39 Total: -1.00 -27.93 291.10 -9.01 -36.94 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.07 Total: 8.61 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -2.98 Total: -30.76 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: 0.61 Total: -18.45 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.43 Total: -10.36 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.50 Total: -2.71 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.93 -9.01 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.595 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds