Wall clock time and date at job start Mon Mar 30 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47053 * 2 1 4 4 C 1.32535 * 122.05698 * 264.71057 * 3 2 1 5 5 S 1.75481 * 110.83277 * 179.89957 * 4 3 2 6 6 C 1.76050 * 91.54796 * 0.30901 * 5 4 3 7 7 C 1.38878 * 130.45192 * 179.80960 * 6 5 4 8 8 C 1.40361 * 119.96504 * 180.02562 * 7 6 5 9 9 C 1.40995 * 120.20319 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00175 * 205.19360 * 9 8 7 11 11 C 1.39880 * 119.99812 * 25.19468 * 9 8 7 12 12 N 1.30892 * 120.00236 * 17.55113 * 11 9 8 13 13 Si 1.86801 * 120.00228 * 197.55348 * 11 9 8 14 14 H 1.48504 * 109.46795 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46860 * 119.99737 * 13 11 9 16 16 H 1.48496 * 109.47690 * 239.99991 * 13 11 9 17 17 C 1.41265 * 119.59304 * 0.02562 * 8 7 6 18 18 C 1.50706 * 119.80232 * 180.02562 * 17 8 7 19 19 O 1.42896 * 109.47403 * 180.02562 * 18 17 8 20 20 C 1.35185 * 120.39416 * 0.02562 * 17 8 7 21 21 C 1.40347 * 109.37778 * 359.82900 * 6 5 4 22 22 H 1.09002 * 109.47154 * 60.00072 * 1 2 3 23 23 H 1.09003 * 109.47125 * 299.99942 * 1 2 3 24 24 H 1.08996 * 109.47129 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46673 * 120.00139 * 2 1 3 26 26 H 1.09001 * 109.46700 * 239.99744 * 2 1 3 27 27 H 1.08000 * 124.58159 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.01745 * 359.97438 * 7 6 5 29 29 H 0.96998 * 120.00304 * 179.97438 * 12 11 9 30 30 H 1.08993 * 109.46888 * 300.02216 * 18 17 8 31 31 H 1.08999 * 109.46888 * 60.01690 * 18 17 8 32 32 H 0.96692 * 114.00033 * 179.97438 * 19 18 17 33 33 H 1.08008 * 119.56453 * 179.97438 * 20 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3645 2.0495 -1.1185 5 16 2.9058 3.6838 -0.7786 6 6 2.6642 3.4554 0.9502 7 6 2.8738 4.3256 2.0120 8 6 2.6043 3.9077 3.3246 9 6 2.8148 4.7872 4.4063 10 1 3.0078 4.3931 5.3931 11 6 2.7737 6.1703 4.2014 12 7 2.2143 6.6557 3.1221 13 14 3.5172 7.3248 5.4678 14 1 4.0841 6.5316 6.5881 15 1 4.5950 8.1263 4.8344 16 1 2.4644 8.2340 5.9874 17 6 2.1208 2.6006 3.5552 18 6 1.8293 2.1472 4.9626 19 8 1.3556 0.7992 4.9403 20 6 1.9180 1.7540 2.5210 21 6 2.1830 2.1582 1.1858 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.3075 1.6154 -2.1058 28 1 3.2448 5.3230 1.8280 29 1 2.1855 7.6148 2.9802 30 1 2.7405 2.2022 5.5580 31 1 1.0687 2.7925 5.4019 32 1 1.1479 0.4409 5.8141 33 1 1.5484 0.7574 2.7127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:27 Heat of formation + Delta-G solvation = -50.371745 kcal Electronic energy + Delta-G solvation = -17176.247798 eV Core-core repulsion = 14484.328480 eV Total energy + Delta-G solvation = -2691.919318 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41294 -38.09012 -37.00133 -35.11485 -33.03958 -31.29231 -30.68517 -27.59535 -26.27827 -24.82972 -23.33300 -21.86145 -19.84753 -19.37787 -18.40319 -17.80767 -16.87335 -15.98257 -15.94691 -15.67850 -15.41099 -14.89567 -14.65439 -14.36618 -14.14333 -13.73941 -13.46945 -13.32472 -12.87828 -12.81991 -12.66695 -12.62953 -12.15716 -11.83508 -11.70630 -11.53716 -11.43189 -11.18309 -11.03589 -10.76334 -10.04642 -9.09282 -8.72966 -8.32020 -6.36401 0.23449 0.90674 1.03151 1.32311 1.39596 1.45922 1.54470 1.81792 2.16138 2.68896 3.53390 3.56228 4.09515 4.16611 4.34096 4.46191 4.50914 4.57946 4.71513 4.79841 4.83099 5.00716 5.05016 5.08234 5.15570 5.26549 5.35806 5.42019 5.47495 5.59273 5.86791 5.98120 6.10650 6.18065 6.49285 6.77866 6.87678 7.06649 8.21629 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.007543 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.550463 B = 3711.068862 C = 4914.873410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 C -0.051 4.051 4 C -0.254 4.254 5 S -0.009 6.009 6 C -0.101 4.101 7 C -0.190 4.190 8 C 0.106 3.894 9 C -0.467 4.467 10 H 0.096 0.904 11 C 0.033 3.967 12 N -0.812 5.812 13 Si 0.985 3.015 14 H -0.248 1.248 15 H -0.269 1.269 16 H -0.265 1.265 17 C -0.193 4.193 18 C 0.150 3.850 19 O -0.584 6.584 20 C -0.035 4.035 21 C -0.214 4.214 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.179 0.821 28 H 0.101 0.899 29 H 0.291 0.709 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.395 0.605 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -7.055 0.456 7.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 C -0.062 4.062 4 C -0.386 4.386 5 S 0.253 5.747 6 C -0.216 4.216 7 C -0.216 4.216 8 C 0.100 3.900 9 C -0.496 4.496 10 H 0.114 0.886 11 C -0.184 4.184 12 N -0.436 5.436 13 Si 0.805 3.195 14 H -0.171 1.171 15 H -0.194 1.194 16 H -0.189 1.189 17 C -0.195 4.195 18 C 0.073 3.927 19 O -0.392 6.392 20 C -0.055 4.055 21 C -0.220 4.220 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.197 0.803 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.245 0.755 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.514 -5.625 -1.289 5.794 hybrid contribution -0.251 -0.025 1.659 1.678 sum -0.765 -5.650 0.370 5.714 Atomic orbital electron populations 1.21658 0.94187 1.02373 1.01263 1.20331 0.96525 0.90233 1.03056 1.18881 0.98671 0.97805 0.90839 1.24746 1.14856 0.96792 1.02206 1.83508 1.74298 1.16304 1.00599 1.22664 1.04435 0.98098 0.96360 1.20426 1.10934 0.98898 0.91377 1.17532 0.88367 0.91329 0.92773 1.19905 1.41972 0.91281 0.96427 0.88562 1.26918 0.92420 1.00818 0.98277 1.69941 1.30319 1.16097 1.27230 0.85102 0.78653 0.77441 0.78288 1.17118 1.19423 1.18938 1.19630 1.08497 0.95930 0.95446 1.20436 0.97304 0.81914 0.93025 1.86375 1.88271 1.28564 1.36023 1.20248 0.96777 0.98582 0.89925 1.18102 1.15100 0.94105 0.94665 0.92761 0.94589 0.90090 0.91422 0.89240 0.80337 0.88058 0.89814 0.92671 0.93130 0.75520 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.90 71.98 0.71 -3.05 16 2 C -0.06 -1.86 5.91 29.85 0.18 -1.68 16 3 C -0.05 -1.99 5.07 -20.47 -0.10 -2.10 16 4 C -0.25 -9.52 10.79 66.67 0.72 -8.80 16 5 S -0.01 -0.38 23.29 -56.49 -1.32 -1.69 16 6 C -0.10 -5.16 6.46 22.94 0.15 -5.01 16 7 C -0.19 -10.46 8.71 22.94 0.20 -10.26 16 8 C 0.11 5.60 5.56 -21.34 -0.12 5.48 16 9 C -0.47 -23.37 8.47 23.34 0.20 -23.17 16 10 H 0.10 4.41 6.98 -2.91 -0.02 4.39 16 11 C 0.03 1.57 5.13 85.23 0.44 2.01 16 12 N -0.81 -41.68 10.98 21.82 0.24 -41.44 16 13 Si 0.99 35.85 29.59 68.60 2.03 37.88 16 14 H -0.25 -8.54 7.11 99.48 0.71 -7.84 16 15 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 16 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 17 C -0.19 -9.25 5.88 -19.82 -0.12 -9.37 16 18 C 0.15 5.75 6.22 71.24 0.44 6.19 16 19 O -0.58 -19.05 12.07 -148.98 -1.80 -20.84 16 20 C -0.04 -1.64 8.95 22.50 0.20 -1.44 16 21 C -0.21 -10.12 5.87 -21.30 -0.12 -10.25 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 2.05 7.54 -2.39 -0.02 2.04 16 26 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 27 H 0.18 5.31 8.06 -2.91 -0.02 5.29 16 28 H 0.10 5.86 6.18 -2.91 -0.02 5.84 16 29 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 30 H 0.06 1.98 7.78 -2.39 -0.02 1.96 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.40 8.02 9.12 -74.06 -0.68 7.34 16 33 H 0.12 5.21 6.34 -2.91 -0.02 5.19 16 Total: -1.00 -62.22 291.10 2.39 -59.83 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.46 Total: 27.71 kcal Atomic # 6 Polarization: -64.21 SS G_CDS: 2.77 Total: -61.44 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.24 Total: -41.44 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.80 Total: -20.84 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -1.32 Total: -1.69 kcal Total: -62.22 2.39 -59.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.456 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds