Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47317 * 2 1 4 4 C 1.37794 * 119.54764 * 268.04590 * 3 2 1 5 5 C 1.37883 * 120.76247 * 180.02562 * 4 3 2 6 6 C 1.40413 * 119.88472 * 0.18744 * 5 4 3 7 7 C 1.40925 * 120.11807 * 179.73874 * 6 5 4 8 8 H 1.07999 * 120.00190 * 151.78670 * 7 6 5 9 9 C 1.39930 * 119.99700 * 331.79242 * 7 6 5 10 10 N 1.30868 * 120.00349 * 348.76418 * 9 7 6 11 11 Si 1.86800 * 119.99643 * 168.76532 * 9 7 6 12 12 H 1.48502 * 109.47467 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47283 * 120.00326 * 11 9 7 14 14 H 1.48505 * 109.47063 * 239.99723 * 11 9 7 15 15 C 1.42165 * 119.76572 * 359.60605 * 6 5 4 16 16 S 1.75893 * 130.53999 * 180.10424 * 15 6 5 17 17 C 1.75306 * 92.17197 * 180.28779 * 16 15 6 18 18 C 1.31863 * 111.33746 * 359.97438 * 17 16 15 19 19 C 1.50705 * 122.55706 * 179.97438 * 18 17 16 20 20 O 1.42906 * 109.46782 * 5.16944 * 19 18 17 21 21 C 1.39423 * 119.69109 * 0.41920 * 15 6 5 22 22 H 1.08993 * 109.47436 * 300.00035 * 1 2 3 23 23 H 1.08999 * 109.47051 * 60.00216 * 1 2 3 24 24 H 1.09005 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47384 * 240.00086 * 2 1 3 26 26 H 1.09000 * 109.47099 * 120.00570 * 2 1 3 27 27 H 1.08001 * 119.61917 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.05684 * 179.97438 * 5 4 3 29 29 H 0.97004 * 120.00098 * 179.97438 * 10 9 7 30 30 H 1.08000 * 124.32974 * 180.02562 * 17 16 15 31 31 H 1.08999 * 109.46801 * 125.16338 * 19 18 17 32 32 H 1.08998 * 109.47163 * 245.16748 * 19 18 17 33 33 H 0.96704 * 113.99490 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2974 2.0478 -1.1980 5 6 2.7584 3.3470 -1.2272 6 6 2.9658 4.0429 -0.0255 7 6 3.4421 5.3691 -0.0494 8 1 3.1877 6.0487 0.7505 9 6 4.2444 5.8052 -1.1096 10 7 4.7343 4.9386 -1.9591 11 14 4.6163 7.6246 -1.3123 12 1 3.9483 8.3901 -0.2292 13 1 6.0836 7.8410 -1.2397 14 1 4.1122 8.0891 -2.6296 15 6 2.6909 3.4060 1.2154 16 16 2.8429 4.0003 2.8639 17 6 2.2818 2.4808 3.5344 18 6 2.0067 1.6094 2.5837 19 6 1.5051 0.2192 2.8783 20 8 1.2792 0.0820 4.2827 21 6 2.2258 2.0917 1.2290 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.1431 1.5153 -2.1249 28 1 2.9629 3.8273 -2.1727 29 1 5.2902 5.2410 -2.6943 30 1 2.1744 2.2839 4.5908 31 1 0.5717 0.0485 2.3418 32 1 2.2478 -0.5108 2.5567 33 1 0.9549 -0.7903 4.5455 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = -26.185263 kcal Electronic energy + Delta-G solvation = -17268.183526 eV Core-core repulsion = 14577.313013 eV Total energy + Delta-G solvation = -2690.870513 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.72570 -36.72955 -34.68351 -33.81203 -32.41565 -29.20469 -28.15709 -26.43851 -25.26262 -22.56814 -21.52359 -20.23702 -18.98389 -17.65755 -16.74830 -15.89021 -15.20338 -14.75241 -14.70436 -14.06100 -13.79941 -13.53636 -13.07138 -12.96870 -12.51451 -12.11448 -11.71027 -11.43804 -11.40968 -11.27358 -11.03928 -10.96977 -10.60715 -10.42724 -10.09251 -10.02050 -9.83574 -9.61404 -9.28597 -9.22416 -8.07892 -7.26071 -6.85379 -6.61350 -4.43300 1.95719 2.62864 2.72039 3.01837 3.03294 3.09235 3.25937 3.41994 3.86822 4.43787 4.51501 5.38990 5.45290 5.56282 5.62707 5.71745 5.76817 5.84363 5.99841 6.23209 6.30399 6.35583 6.46728 6.62963 6.71061 6.77725 6.92606 7.11420 7.22596 7.37302 7.57507 7.79493 7.82915 7.95489 8.10559 8.47840 8.71131 8.76733 10.08889 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.007095 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.047893 B = 3945.567955 C = 4901.830777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.180 4.180 4 C -0.082 4.082 5 C -0.164 4.164 6 C 0.144 3.856 7 C -0.453 4.453 8 H 0.080 0.920 9 C 0.075 3.925 10 N -0.791 5.791 11 Si 0.912 3.088 12 H -0.259 1.259 13 H -0.273 1.273 14 H -0.271 1.271 15 C -0.201 4.201 16 S 0.038 5.962 17 C -0.189 4.189 18 C -0.105 4.105 19 C 0.133 3.867 20 O -0.575 6.575 21 C -0.036 4.036 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.282 0.718 30 H 0.154 0.846 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 -6.465 3.733 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.184 4.184 4 C -0.102 4.102 5 C -0.187 4.187 6 C 0.138 3.862 7 C -0.482 4.482 8 H 0.098 0.902 9 C -0.143 4.143 10 N -0.416 5.416 11 Si 0.736 3.264 12 H -0.183 1.183 13 H -0.198 1.198 14 H -0.196 1.196 15 C -0.316 4.316 16 S 0.302 5.698 17 C -0.323 4.323 18 C -0.119 4.119 19 C 0.054 3.946 20 O -0.380 6.380 21 C -0.043 4.043 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.145 0.855 29 H 0.093 0.907 30 H 0.172 0.828 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.598 -4.450 4.235 7.119 hybrid contribution -0.286 -1.087 -0.818 1.390 sum -3.884 -5.537 3.417 7.577 Atomic orbital electron populations 1.21869 0.96617 0.99885 1.01954 1.20425 0.94723 0.94734 1.01035 1.18871 1.12780 0.95612 0.91141 1.20393 0.99191 0.95455 0.95145 1.21202 1.04948 0.94381 0.98184 1.16990 0.88475 0.92745 0.87978 1.19539 1.26376 0.96247 1.06075 0.90209 1.25900 0.94001 1.00083 0.94346 1.69817 1.24088 1.35671 1.12022 0.86181 0.78877 0.81942 0.79374 1.18259 1.19775 1.19576 1.22576 1.16177 0.97038 0.95767 1.83570 1.72047 1.14763 0.99404 1.24650 1.07500 0.97760 1.02379 1.19455 1.04692 0.95448 0.92284 1.21008 0.98999 0.93901 0.80666 1.86457 1.89319 1.37819 1.24357 1.18397 1.01958 0.93076 0.90855 0.92843 0.92811 0.93886 0.92664 0.92268 0.88820 0.85494 0.90713 0.82808 0.91785 0.92609 0.77886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.21 37.16 0.34 -1.82 16 2 C -0.07 -1.21 5.36 -27.88 -0.15 -1.36 16 3 C -0.18 -3.87 5.21 -103.60 -0.54 -4.41 16 4 C -0.08 -1.87 9.58 -39.87 -0.38 -2.25 16 5 C -0.16 -4.16 8.64 -38.89 -0.34 -4.50 16 6 C 0.14 3.81 5.58 -106.55 -0.59 3.22 16 7 C -0.45 -11.91 8.82 -37.93 -0.33 -12.25 16 8 H 0.08 2.07 7.78 -52.49 -0.41 1.66 16 9 C 0.07 1.85 5.24 -17.33 -0.09 1.76 16 10 N -0.79 -19.96 10.81 55.55 0.60 -19.36 16 11 Si 0.91 18.52 29.57 -169.99 -5.03 13.50 16 12 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 13 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 15 C -0.20 -5.03 6.36 -37.63 -0.24 -5.27 16 16 S 0.04 0.83 22.88 -107.50 -2.46 -1.63 16 17 C -0.19 -3.82 10.28 28.83 0.30 -3.52 16 18 C -0.10 -2.12 5.97 -103.65 -0.62 -2.74 16 19 C 0.13 2.11 5.60 36.01 0.20 2.31 16 20 O -0.57 -8.14 12.50 -35.23 -0.44 -8.58 16 21 C -0.04 -0.83 5.97 -105.40 -0.63 -1.46 16 22 H 0.05 0.82 6.49 -51.93 -0.34 0.49 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 26 H 0.06 0.93 4.65 -51.93 -0.24 0.69 16 27 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.13 3.29 6.16 -52.49 -0.32 2.97 16 29 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 30 H 0.15 2.81 7.42 -52.49 -0.39 2.42 16 31 H 0.06 0.94 4.99 -51.93 -0.26 0.68 16 32 H 0.06 0.83 6.75 -51.93 -0.35 0.48 16 33 H 0.38 3.19 9.12 45.56 0.42 3.60 16 LS Contribution 282.96 15.07 4.26 4.26 Total: -1.00 -28.63 282.96 -8.85 -37.48 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -2.71 Total: 6.61 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -3.07 Total: -32.29 kcal Atomic # 7 Polarization: -19.96 SS G_CDS: 0.60 Total: -19.36 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.44 Total: -8.58 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.46 Total: -1.63 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.63 -8.85 -37.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.294 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds