Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47317 * 2 1 4 4 C 1.37794 * 119.54764 * 268.04590 * 3 2 1 5 5 C 1.37883 * 120.76247 * 180.02562 * 4 3 2 6 6 C 1.40413 * 119.88472 * 0.18744 * 5 4 3 7 7 C 1.40925 * 120.11807 * 179.73874 * 6 5 4 8 8 H 1.07999 * 120.00190 * 151.78670 * 7 6 5 9 9 C 1.39930 * 119.99700 * 331.79242 * 7 6 5 10 10 N 1.30868 * 120.00349 * 348.76418 * 9 7 6 11 11 Si 1.86800 * 119.99643 * 168.76532 * 9 7 6 12 12 H 1.48502 * 109.47467 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47283 * 120.00326 * 11 9 7 14 14 H 1.48505 * 109.47063 * 239.99723 * 11 9 7 15 15 C 1.42165 * 119.76572 * 359.60605 * 6 5 4 16 16 S 1.75893 * 130.53999 * 180.10424 * 15 6 5 17 17 C 1.75306 * 92.17197 * 180.28779 * 16 15 6 18 18 C 1.31863 * 111.33746 * 359.97438 * 17 16 15 19 19 C 1.50705 * 122.55706 * 179.97438 * 18 17 16 20 20 O 1.42906 * 109.46782 * 5.16944 * 19 18 17 21 21 C 1.39423 * 119.69109 * 0.41920 * 15 6 5 22 22 H 1.08993 * 109.47436 * 300.00035 * 1 2 3 23 23 H 1.08999 * 109.47051 * 60.00216 * 1 2 3 24 24 H 1.09005 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47384 * 240.00086 * 2 1 3 26 26 H 1.09000 * 109.47099 * 120.00570 * 2 1 3 27 27 H 1.08001 * 119.61917 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.05684 * 179.97438 * 5 4 3 29 29 H 0.97004 * 120.00098 * 179.97438 * 10 9 7 30 30 H 1.08000 * 124.32974 * 180.02562 * 17 16 15 31 31 H 1.08999 * 109.46801 * 125.16338 * 19 18 17 32 32 H 1.08998 * 109.47163 * 245.16748 * 19 18 17 33 33 H 0.96704 * 113.99490 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2974 2.0478 -1.1980 5 6 2.7584 3.3470 -1.2272 6 6 2.9658 4.0429 -0.0255 7 6 3.4421 5.3691 -0.0494 8 1 3.1877 6.0487 0.7505 9 6 4.2444 5.8052 -1.1096 10 7 4.7343 4.9386 -1.9591 11 14 4.6163 7.6246 -1.3123 12 1 3.9483 8.3901 -0.2292 13 1 6.0836 7.8410 -1.2397 14 1 4.1122 8.0891 -2.6296 15 6 2.6909 3.4060 1.2154 16 16 2.8429 4.0003 2.8639 17 6 2.2818 2.4808 3.5344 18 6 2.0067 1.6094 2.5837 19 6 1.5051 0.2192 2.8783 20 8 1.2792 0.0820 4.2827 21 6 2.2258 2.0917 1.2290 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.1431 1.5153 -2.1249 28 1 2.9629 3.8273 -2.1727 29 1 5.2902 5.2410 -2.6943 30 1 2.1744 2.2839 4.5908 31 1 0.5717 0.0485 2.3418 32 1 2.2478 -0.5108 2.5567 33 1 0.9549 -0.7903 4.5455 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = -43.384640 kcal Electronic energy + Delta-G solvation = -17268.929347 eV Core-core repulsion = 14577.313013 eV Total energy + Delta-G solvation = -2691.616334 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37258 -38.07385 -36.32200 -35.33678 -34.06103 -30.92087 -29.84481 -27.83257 -26.95240 -24.11061 -23.23511 -21.87027 -20.64468 -19.21714 -18.12839 -17.65510 -16.84350 -16.32355 -15.95338 -15.72058 -15.42968 -14.96345 -14.63991 -14.40704 -14.14531 -13.70250 -13.23116 -13.07246 -12.97498 -12.80011 -12.64370 -12.49274 -12.16971 -11.90735 -11.69414 -11.61528 -11.44322 -11.06951 -11.01501 -10.86210 -9.81482 -9.06708 -8.68416 -8.38240 -6.35294 0.25439 0.82367 1.03528 1.34346 1.37145 1.49204 1.52571 1.71828 2.17323 2.69311 3.31946 3.54888 4.01905 4.20992 4.28993 4.37053 4.51625 4.57631 4.64738 4.72027 4.85181 4.98743 5.03614 5.10355 5.15477 5.16497 5.34497 5.49169 5.56529 5.58849 5.81382 5.94518 6.15912 6.25728 6.59664 6.81662 6.88974 6.98755 8.28835 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.007095 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.047893 B = 3945.567955 C = 4901.830777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.168 4.168 4 C -0.093 4.093 5 C -0.186 4.186 6 C 0.110 3.890 7 C -0.489 4.489 8 H 0.068 0.932 9 C 0.036 3.964 10 N -0.823 5.823 11 Si 0.981 3.019 12 H -0.262 1.262 13 H -0.264 1.264 14 H -0.259 1.259 15 C -0.234 4.234 16 S 0.020 5.980 17 C -0.186 4.186 18 C -0.109 4.109 19 C 0.141 3.859 20 O -0.585 6.585 21 C -0.054 4.054 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.290 0.710 30 H 0.177 0.823 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -8.578 4.431 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.171 4.171 4 C -0.113 4.113 5 C -0.209 4.209 6 C 0.104 3.896 7 C -0.519 4.519 8 H 0.086 0.914 9 C -0.179 4.179 10 N -0.449 5.449 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.189 1.189 14 H -0.183 1.183 15 C -0.349 4.349 16 S 0.284 5.716 17 C -0.319 4.319 18 C -0.122 4.122 19 C 0.062 3.938 20 O -0.395 6.395 21 C -0.061 4.061 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.100 0.900 30 H 0.194 0.806 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.523 -6.610 4.946 9.414 hybrid contribution -0.074 -0.610 -0.956 1.137 sum -4.597 -7.220 3.990 9.443 Atomic orbital electron populations 1.21805 0.94662 1.02077 1.01233 1.20540 0.96258 0.91413 1.02707 1.19479 1.09828 0.97786 0.90049 1.20699 0.98887 0.94704 0.96967 1.21206 1.06459 0.95838 0.97391 1.17316 0.89665 0.93465 0.89121 1.19652 1.28412 0.96663 1.07165 0.91353 1.26684 0.93245 1.04371 0.93565 1.69859 1.24789 1.37530 1.12685 0.85162 0.78877 0.76310 0.79451 1.18607 1.18874 1.18323 1.22955 1.16890 0.98495 0.96545 1.83484 1.72890 1.16826 0.98418 1.24878 1.07234 0.96353 1.03459 1.19833 1.03853 0.97860 0.90694 1.20916 0.99923 0.90968 0.81982 1.86384 1.89617 1.40373 1.23086 1.18900 1.01704 0.92587 0.92874 0.93554 0.93654 0.90212 0.91200 0.90453 0.86369 0.87087 0.89957 0.80559 0.90177 0.90960 0.74707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.21 71.98 0.66 -2.93 16 2 C -0.07 -2.16 5.36 29.85 0.16 -2.00 16 3 C -0.17 -6.99 5.21 -19.20 -0.10 -7.09 16 4 C -0.09 -4.23 9.58 22.08 0.21 -4.02 16 5 C -0.19 -9.83 8.64 22.72 0.20 -9.64 16 6 C 0.11 6.10 5.58 -21.12 -0.12 5.99 16 7 C -0.49 -27.18 8.82 23.34 0.21 -26.97 16 8 H 0.07 3.78 7.78 -2.91 -0.02 3.76 16 9 C 0.04 1.85 5.24 85.25 0.45 2.30 16 10 N -0.82 -43.18 10.81 21.83 0.24 -42.94 16 11 Si 0.98 39.15 29.57 68.60 2.03 41.18 16 12 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 13 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 14 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 15 C -0.23 -12.08 6.36 23.53 0.15 -11.93 16 16 S 0.02 0.91 22.88 -56.49 -1.29 -0.38 16 17 C -0.19 -7.26 10.28 67.01 0.69 -6.57 16 18 C -0.11 -4.20 5.97 -18.81 -0.11 -4.32 16 19 C 0.14 3.89 5.60 71.24 0.40 4.29 16 20 O -0.59 -14.05 12.50 -148.98 -1.86 -15.91 16 21 C -0.05 -2.43 5.97 -20.37 -0.12 -2.55 16 22 H 0.05 1.25 6.49 -2.39 -0.02 1.24 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 26 H 0.08 2.07 4.65 -2.39 -0.01 2.06 16 27 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 28 H 0.11 6.09 6.16 -2.91 -0.02 6.07 16 29 H 0.29 13.63 8.30 -92.71 -0.77 12.87 16 30 H 0.18 6.03 7.42 -2.91 -0.02 6.00 16 31 H 0.08 1.98 4.99 -2.39 -0.01 1.97 16 32 H 0.07 1.79 6.75 -2.39 -0.02 1.77 16 33 H 0.40 4.87 9.12 -74.05 -0.68 4.19 16 Total: -1.00 -64.76 282.96 2.26 -62.51 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.48 Total: 21.00 kcal Atomic # 6 Polarization: -68.12 SS G_CDS: 2.67 Total: -65.45 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.24 Total: -42.94 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.86 Total: -15.91 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -1.29 Total: -0.38 kcal Total: -64.76 2.26 -62.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.121 kcal (2) G-P(sol) polarization free energy of solvation -64.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds