Wall clock time and date at job start Mon Mar 30 2020 06:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47334 * 2 1 4 4 C 1.38950 * 119.95926 * 90.00205 * 3 2 1 5 5 S 1.76057 * 130.42733 * 359.97438 * 4 3 2 6 6 C 1.75482 * 91.53641 * 180.02562 * 5 4 3 7 7 C 1.32579 * 110.80690 * 359.97438 * 6 5 4 8 8 C 1.40249 * 120.19460 * 180.02562 * 4 3 2 9 9 C 1.42467 * 118.97561 * 359.97438 * 8 4 3 10 10 O 1.35850 * 119.62081 * 179.97438 * 9 8 4 11 11 C 1.42897 * 117.00287 * 185.90220 * 10 9 8 12 12 C 1.35685 * 120.76595 * 0.25926 * 9 8 4 13 13 C 1.40419 * 119.96392 * 269.98265 * 3 2 1 14 14 C 1.40993 * 120.17422 * 359.97438 * 13 3 2 15 15 H 1.08002 * 119.99960 * 328.25196 * 14 13 3 16 16 C 1.39830 * 120.00220 * 148.26050 * 14 13 3 17 17 N 1.30912 * 120.00368 * 166.61767 * 16 14 13 18 18 Si 1.86797 * 119.99854 * 346.61884 * 16 14 13 19 19 H 1.48500 * 109.47563 * 93.21289 * 18 16 14 20 20 H 1.48500 * 109.47464 * 213.21387 * 18 16 14 21 21 H 1.48502 * 109.47145 * 333.21026 * 18 16 14 22 22 H 1.08994 * 109.47594 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47050 * 300.00193 * 1 2 3 24 24 H 1.09003 * 109.47262 * 59.99633 * 1 2 3 25 25 H 1.09000 * 109.46703 * 240.00423 * 2 1 3 26 26 H 1.09003 * 109.47262 * 120.00367 * 2 1 3 27 27 H 1.08001 * 124.59644 * 180.02562 * 6 5 4 28 28 H 1.07999 * 122.05839 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.46932 * 175.40971 * 11 10 9 30 30 H 1.09002 * 109.46689 * 55.41135 * 11 10 9 31 31 H 1.08995 * 109.47079 * 295.41248 * 11 10 9 32 32 H 1.08003 * 119.83588 * 179.72563 * 12 9 8 33 33 H 0.97001 * 120.00054 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2637 2.0750 1.2038 5 16 2.0662 1.5180 2.8623 6 6 2.6115 3.0611 3.4954 7 6 2.9078 3.8965 2.5095 8 6 2.7307 3.3974 1.2096 9 6 2.9625 4.0529 -0.0339 10 8 3.4144 5.3341 -0.0436 11 6 3.5042 5.9807 -1.3147 12 6 2.7316 3.4145 -1.2087 13 6 2.2665 2.0819 -1.2165 14 6 2.0333 1.4197 -2.4392 15 1 2.1782 0.3519 -2.5113 16 6 1.6147 2.1455 -3.5587 17 7 1.6491 1.5952 -4.7460 18 14 1.0064 3.9005 -3.3600 19 1 2.1359 4.8423 -3.5659 20 1 -0.0545 4.1733 -4.3627 21 1 0.4540 4.0812 -1.9934 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.6953 3.2979 4.5458 28 1 3.2629 4.8994 2.6951 29 1 3.7995 7.0204 -1.1733 30 1 2.5344 5.9427 -1.8110 31 1 4.2470 5.4723 -1.9293 32 1 2.9083 3.9273 -2.1427 33 1 1.3583 2.0986 -5.5225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317847.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:53 Heat of formation + Delta-G solvation = -12.456934 kcal Electronic energy + Delta-G solvation = -17680.153852 eV Core-core repulsion = 14989.878643 eV Total energy + Delta-G solvation = -2690.275208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.54063 -37.26398 -35.41670 -33.44946 -32.12755 -29.48134 -28.26981 -27.05264 -25.07086 -22.98639 -22.12332 -20.32148 -19.45472 -18.25551 -16.93134 -16.00725 -15.40437 -15.17604 -14.80291 -14.47621 -13.85361 -13.70416 -13.15288 -12.86259 -12.72179 -12.20480 -12.02217 -11.84758 -11.48637 -11.35723 -11.10691 -11.04693 -10.84543 -10.59029 -10.28524 -10.25210 -9.83506 -9.68420 -9.57038 -9.16697 -8.24938 -7.53902 -7.20136 -6.64752 -4.66415 1.72263 2.40303 2.50261 2.79711 2.89391 2.98727 3.09681 3.30353 3.75196 3.92822 4.30538 5.08758 5.45511 5.53471 5.58487 5.76071 5.82839 5.88933 6.04476 6.15182 6.28987 6.31958 6.44569 6.49235 6.62285 6.70743 6.81842 6.88021 6.96618 7.05034 7.34592 7.41690 7.50699 7.68594 7.97771 8.11787 8.43286 8.51428 9.79669 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.010388 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.437170 B = 2694.839778 C = 3922.930969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.186 4.186 4 C -0.033 4.033 5 S 0.017 5.983 6 C -0.275 4.275 7 C -0.056 4.056 8 C -0.223 4.223 9 C 0.197 3.803 10 O -0.325 6.325 11 C 0.027 3.973 12 C -0.306 4.306 13 C 0.139 3.861 14 C -0.415 4.415 15 H 0.103 0.897 16 C 0.082 3.918 17 N -0.793 5.793 18 Si 0.906 3.094 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.240 1.240 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.146 0.854 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 3.810 5.233 6.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 C -0.195 4.195 4 C -0.148 4.148 5 S 0.277 5.723 6 C -0.408 4.408 7 C -0.085 4.085 8 C -0.228 4.228 9 C 0.151 3.849 10 O -0.238 6.238 11 C -0.068 4.068 12 C -0.326 4.326 13 C 0.132 3.868 14 C -0.443 4.443 15 H 0.121 0.879 16 C -0.139 4.139 17 N -0.415 5.415 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.163 1.163 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.164 0.836 28 H 0.140 0.860 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.408 2.621 5.874 6.445 hybrid contribution 0.267 2.167 -1.082 2.437 sum -0.141 4.787 4.792 6.775 Atomic orbital electron populations 1.21657 0.96350 0.99906 1.01796 1.20088 0.95082 0.93333 1.00764 1.18931 1.13428 0.97565 0.89546 1.21930 1.01576 0.95728 0.95571 1.83617 1.74063 1.16565 0.98095 1.24499 1.16700 0.97990 1.01591 1.19641 0.98542 0.99267 0.91052 1.16979 1.19924 0.94988 0.90915 1.18360 0.92015 0.81808 0.92765 1.85923 1.81054 1.25402 1.31454 1.23051 1.01421 0.97177 0.85188 1.20715 1.16973 0.99426 0.95475 1.17161 0.87366 0.89764 0.92502 1.19535 1.35803 0.97930 0.91048 0.87901 1.26216 0.92948 1.00628 0.94117 1.69679 1.32891 1.39425 0.99551 0.86456 0.78860 0.81117 0.80309 1.19349 1.21389 1.16341 0.93979 0.93626 0.92209 0.91150 0.93624 0.83589 0.85954 0.88960 0.93240 0.92811 0.86718 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.89 37.15 0.37 -2.23 16 2 C -0.06 -1.12 5.53 -27.88 -0.15 -1.27 16 3 C -0.19 -4.26 5.22 -103.54 -0.54 -4.80 16 4 C -0.03 -0.74 6.29 -38.56 -0.24 -0.98 16 5 S 0.02 0.32 22.58 -107.50 -2.43 -2.11 16 6 C -0.28 -5.00 11.10 28.83 0.32 -4.68 16 7 C -0.06 -1.10 9.96 -40.69 -0.41 -1.51 16 8 C -0.22 -5.02 5.90 -106.71 -0.63 -5.65 16 9 C 0.20 4.47 6.71 -38.87 -0.26 4.21 16 10 O -0.32 -6.54 10.35 -19.27 -0.20 -6.74 16 11 C 0.03 0.44 9.80 101.05 0.99 1.43 16 12 C -0.31 -7.14 5.92 -39.39 -0.23 -7.37 16 13 C 0.14 3.36 5.10 -106.93 -0.55 2.81 16 14 C -0.42 -10.31 8.88 -37.94 -0.34 -10.65 16 15 H 0.10 2.65 6.55 -52.49 -0.34 2.30 16 16 C 0.08 1.98 5.45 -17.35 -0.09 1.89 16 17 N -0.79 -19.49 13.93 55.54 0.77 -18.71 16 18 Si 0.91 19.36 23.42 -169.99 -3.98 15.38 16 19 H -0.27 -5.30 5.95 56.52 0.34 -4.96 16 20 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.24 -5.42 6.72 56.52 0.38 -5.04 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.45 6.29 -51.93 -0.33 1.12 16 26 H 0.05 0.86 7.59 -51.93 -0.39 0.47 16 27 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 28 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.84 5.78 -51.93 -0.30 0.54 16 31 H 0.05 0.86 7.65 -51.93 -0.40 0.46 16 32 H 0.12 2.57 2.76 -52.48 -0.14 2.43 16 33 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 279.41 15.07 4.21 4.21 Total: -1.00 -26.13 279.41 -7.05 -33.18 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.66 Total: 3.58 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -1.77 Total: -28.79 kcal Atomic # 7 Polarization: -19.49 SS G_CDS: 0.77 Total: -18.71 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.20 Total: -6.74 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -3.98 Total: 15.38 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.43 Total: -2.11 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.13 -7.05 -33.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317847.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.728 kcal (2) G-P(sol) polarization free energy of solvation -26.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds