Wall clock time and date at job start Mon Mar 30 2020 06:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47334 * 2 1 4 4 C 1.38950 * 119.95926 * 90.00205 * 3 2 1 5 5 S 1.76057 * 130.42733 * 359.97438 * 4 3 2 6 6 C 1.75482 * 91.53641 * 180.02562 * 5 4 3 7 7 C 1.32579 * 110.80690 * 359.97438 * 6 5 4 8 8 C 1.40249 * 120.19460 * 180.02562 * 4 3 2 9 9 C 1.42467 * 118.97561 * 359.97438 * 8 4 3 10 10 O 1.35850 * 119.62081 * 179.97438 * 9 8 4 11 11 C 1.42897 * 117.00287 * 185.90220 * 10 9 8 12 12 C 1.35685 * 120.76595 * 0.25926 * 9 8 4 13 13 C 1.40419 * 119.96392 * 269.98265 * 3 2 1 14 14 C 1.40993 * 120.17422 * 359.97438 * 13 3 2 15 15 H 1.08002 * 119.99960 * 328.25196 * 14 13 3 16 16 C 1.39830 * 120.00220 * 148.26050 * 14 13 3 17 17 N 1.30912 * 120.00368 * 166.61767 * 16 14 13 18 18 Si 1.86797 * 119.99854 * 346.61884 * 16 14 13 19 19 H 1.48500 * 109.47563 * 93.21289 * 18 16 14 20 20 H 1.48500 * 109.47464 * 213.21387 * 18 16 14 21 21 H 1.48502 * 109.47145 * 333.21026 * 18 16 14 22 22 H 1.08994 * 109.47594 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47050 * 300.00193 * 1 2 3 24 24 H 1.09003 * 109.47262 * 59.99633 * 1 2 3 25 25 H 1.09000 * 109.46703 * 240.00423 * 2 1 3 26 26 H 1.09003 * 109.47262 * 120.00367 * 2 1 3 27 27 H 1.08001 * 124.59644 * 180.02562 * 6 5 4 28 28 H 1.07999 * 122.05839 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.46932 * 175.40971 * 11 10 9 30 30 H 1.09002 * 109.46689 * 55.41135 * 11 10 9 31 31 H 1.08995 * 109.47079 * 295.41248 * 11 10 9 32 32 H 1.08003 * 119.83588 * 179.72563 * 12 9 8 33 33 H 0.97001 * 120.00054 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2637 2.0750 1.2038 5 16 2.0662 1.5180 2.8623 6 6 2.6115 3.0611 3.4954 7 6 2.9078 3.8965 2.5095 8 6 2.7307 3.3974 1.2096 9 6 2.9625 4.0529 -0.0339 10 8 3.4144 5.3341 -0.0436 11 6 3.5042 5.9807 -1.3147 12 6 2.7316 3.4145 -1.2087 13 6 2.2665 2.0819 -1.2165 14 6 2.0333 1.4197 -2.4392 15 1 2.1782 0.3519 -2.5113 16 6 1.6147 2.1455 -3.5587 17 7 1.6491 1.5952 -4.7460 18 14 1.0064 3.9005 -3.3600 19 1 2.1359 4.8423 -3.5659 20 1 -0.0545 4.1733 -4.3627 21 1 0.4540 4.0812 -1.9934 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.6953 3.2979 4.5458 28 1 3.2629 4.8994 2.6951 29 1 3.7995 7.0204 -1.1733 30 1 2.5344 5.9427 -1.8110 31 1 4.2470 5.4723 -1.9293 32 1 2.9083 3.9273 -2.1427 33 1 1.3583 2.0986 -5.5225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317847.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:53 Heat of formation + Delta-G solvation = -26.487764 kcal Electronic energy + Delta-G solvation = -17680.762274 eV Core-core repulsion = 14989.878643 eV Total energy + Delta-G solvation = -2690.883631 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17686 -38.85783 -37.07092 -35.18046 -33.78036 -31.15598 -29.86361 -28.54540 -26.73679 -24.58383 -23.81331 -21.93736 -21.11354 -19.92615 -18.61722 -17.63594 -17.00847 -16.68847 -16.43177 -16.17523 -15.49194 -15.18303 -14.74135 -14.51231 -14.38372 -13.76985 -13.62367 -13.42103 -13.14095 -12.93234 -12.74630 -12.58910 -12.37590 -12.20833 -11.92286 -11.85568 -11.53813 -11.35328 -11.22927 -10.86056 -9.86257 -9.22991 -8.98855 -8.28138 -6.49233 0.07044 0.64794 0.89148 1.09984 1.26303 1.33689 1.38654 1.63977 2.02772 2.42220 2.56411 3.29590 3.97813 4.19300 4.23029 4.25019 4.28323 4.46835 4.57784 4.63814 4.70016 4.71058 4.77128 4.87917 5.07073 5.10402 5.16275 5.24307 5.37997 5.48357 5.63908 5.77108 5.79162 5.94474 6.18427 6.37347 6.68188 6.71545 8.06761 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.010388 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.437170 B = 2694.839778 C = 3922.930969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C -0.200 4.200 4 C -0.064 4.064 5 S 0.055 5.945 6 C -0.247 4.247 7 C -0.081 4.081 8 C -0.229 4.229 9 C 0.186 3.814 10 O -0.327 6.327 11 C 0.017 3.983 12 C -0.316 4.316 13 C 0.121 3.879 14 C -0.444 4.444 15 H 0.077 0.923 16 C 0.053 3.947 17 N -0.831 5.831 18 Si 0.947 3.053 19 H -0.244 1.244 20 H -0.276 1.276 21 H -0.261 1.261 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.187 0.813 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.119 0.881 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 5.306 7.822 9.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.209 4.209 4 C -0.179 4.179 5 S 0.315 5.685 6 C -0.379 4.379 7 C -0.110 4.110 8 C -0.235 4.235 9 C 0.138 3.862 10 O -0.240 6.240 11 C -0.078 4.078 12 C -0.336 4.336 13 C 0.114 3.886 14 C -0.473 4.473 15 H 0.095 0.905 16 C -0.164 4.164 17 N -0.456 5.456 18 Si 0.771 3.229 19 H -0.169 1.169 20 H -0.202 1.202 21 H -0.186 1.186 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.205 0.795 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.291 4.112 8.451 9.403 hybrid contribution 0.298 1.724 -1.542 2.332 sum 0.007 5.835 6.909 9.044 Atomic orbital electron populations 1.21584 0.95061 1.01413 1.00901 1.20087 0.96175 0.92117 1.00671 1.19248 1.13273 0.98648 0.89699 1.22306 1.01960 0.96252 0.97402 1.83507 1.73080 1.16709 0.95199 1.25091 1.12838 0.96677 1.03319 1.19808 1.00353 1.00825 0.90030 1.17518 1.18578 0.95168 0.92267 1.18497 0.92061 0.82944 0.92653 1.85914 1.80562 1.24110 1.33447 1.23392 1.01213 0.99207 0.83957 1.20818 1.17266 0.99274 0.96234 1.17342 0.87841 0.90565 0.92803 1.19402 1.38736 0.96893 0.92292 0.90493 1.26710 0.92772 1.03181 0.93719 1.69697 1.34970 1.40809 1.00138 0.85843 0.79342 0.78587 0.79105 1.16915 1.20203 1.18560 0.91285 0.93197 0.94280 0.92521 0.92254 0.79534 0.83939 0.84537 0.93926 0.92745 0.86356 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.89 71.98 0.71 -4.18 16 2 C -0.05 -2.17 5.53 29.85 0.16 -2.01 16 3 C -0.20 -9.29 5.22 -19.16 -0.10 -9.39 16 4 C -0.06 -2.79 6.29 22.93 0.14 -2.65 16 5 S 0.05 1.90 22.58 -56.49 -1.28 0.63 16 6 C -0.25 -7.82 11.10 66.67 0.74 -7.08 16 7 C -0.08 -2.94 9.96 21.63 0.22 -2.72 16 8 C -0.23 -9.97 5.90 -21.22 -0.13 -10.10 16 9 C 0.19 8.27 6.71 22.73 0.15 8.42 16 10 O -0.33 -12.57 10.35 -91.87 -0.95 -13.52 16 11 C 0.02 0.51 9.80 113.37 1.11 1.63 16 12 C -0.32 -14.87 5.92 22.39 0.13 -14.74 16 13 C 0.12 6.02 5.10 -21.36 -0.11 5.91 16 14 C -0.44 -23.30 8.88 23.33 0.21 -23.09 16 15 H 0.08 4.28 6.55 -2.91 -0.02 4.26 16 16 C 0.05 2.68 5.45 85.22 0.46 3.14 16 17 N -0.83 -42.59 13.93 21.81 0.30 -42.29 16 18 Si 0.95 40.36 23.42 68.60 1.61 41.96 16 19 H -0.24 -9.32 5.95 99.48 0.59 -8.73 16 20 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.26 -11.91 6.72 99.48 0.67 -11.24 16 22 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 2.45 6.29 -2.39 -0.02 2.43 16 26 H 0.06 2.21 7.59 -2.39 -0.02 2.19 16 27 H 0.19 4.42 8.06 -2.91 -0.02 4.39 16 28 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.04 1.36 5.78 -2.39 -0.01 1.35 16 31 H 0.05 1.65 7.65 -2.39 -0.02 1.63 16 32 H 0.12 5.34 2.76 -2.91 -0.01 5.33 16 33 H 0.30 13.67 8.30 -92.71 -0.77 12.90 16 Total: -1.00 -57.44 279.41 4.38 -53.06 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.98 Total: 17.00 kcal Atomic # 6 Polarization: -60.56 SS G_CDS: 3.71 Total: -56.85 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.30 Total: -42.29 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.95 Total: -13.52 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.61 Total: 41.96 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.28 Total: 0.63 kcal Total: -57.44 4.38 -53.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317847.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.572 kcal (2) G-P(sol) polarization free energy of solvation -57.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds