Wall clock time and date at job start Mon Mar 30 2020 06:50:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50692 * 109.46911 * 2 1
4 4 C 1.39770 * 119.83738 * 90.00375 * 3 2 1
5 5 S 1.75796 * 130.14041 * 359.95238 * 4 3 2
6 6 C 1.69971 * 93.23299 * 180.02562 * 5 4 3
7 7 C 1.36454 * 111.96255 * 0.22930 * 6 5 4
8 8 C 1.40792 * 123.29743 * 179.77053 * 7 6 5
9 9 H 1.08001 * 119.99792 * 202.41120 * 8 7 6
10 10 C 1.39701 * 120.00424 * 22.41678 * 8 7 6
11 11 N 1.31085 * 119.99388 * 11.08595 * 10 8 7
12 12 Si 1.86798 * 120.00288 * 191.08953 * 10 8 7
13 13 H 1.48494 * 109.47058 * 89.99822 * 12 10 8
14 14 H 1.48507 * 109.47073 * 209.99872 * 12 10 8
15 15 H 1.48500 * 109.46847 * 329.99542 * 12 10 8
16 16 C 1.39368 * 119.67313 * 179.97438 * 4 3 2
17 17 C 1.40636 * 119.32365 * 359.93149 * 16 4 3
18 18 C 1.37314 * 120.39999 * 359.97438 * 17 16 4
19 19 C 1.38122 * 119.83817 * 269.86184 * 3 2 1
20 20 O 1.35891 * 119.96717 * 0.06835 * 19 3 2
21 21 C 1.42907 * 117.00093 * 179.97438 * 20 19 3
22 22 H 1.09007 * 109.47123 * 179.97438 * 1 2 3
23 23 H 1.08993 * 109.47171 * 299.99383 * 1 2 3
24 24 H 1.09003 * 109.47176 * 60.00084 * 1 2 3
25 25 H 1.09004 * 109.46810 * 240.00307 * 2 1 3
26 26 H 1.09000 * 109.47065 * 120.00684 * 2 1 3
27 27 H 1.08001 * 124.02025 * 179.97438 * 6 5 4
28 28 H 0.96997 * 119.99821 * 180.02562 * 11 10 8
29 29 H 1.08001 * 119.79947 * 180.02562 * 17 16 4
30 30 H 1.08000 * 119.89310 * 180.02562 * 18 17 16
31 31 H 1.09002 * 109.46410 * 60.00624 * 21 20 19
32 32 H 1.08994 * 109.47067 * 179.97438 * 21 20 19
33 33 H 1.08994 * 109.46936 * 300.00756 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2641 2.0764 1.2124
5 16 2.0626 1.5092 2.8641
6 6 2.5832 2.9815 3.5352
7 6 2.9019 3.8961 2.5740
8 6 3.3558 5.1967 2.8648
9 1 3.2518 5.9818 2.1305
10 6 3.9409 5.4719 4.1032
11 7 4.2662 4.4889 4.9072
12 14 4.2595 7.2403 4.6135
13 1 3.0742 7.7685 5.3353
14 1 5.4459 7.2921 5.5053
15 1 4.5121 8.0662 3.4054
16 6 2.7291 3.3902 1.2084
17 6 2.9593 4.0356 -0.0197
18 6 2.7292 3.3791 -1.2036
19 6 2.2640 2.0677 -1.1981
20 8 2.0376 1.4229 -2.3726
21 6 2.2979 2.1520 -3.5738
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3633 0.5137 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.8933 -0.5138 -0.8901
26 1 1.8933 -0.5139 0.8899
27 1 2.6496 3.1720 4.5962
28 1 4.6720 4.6799 5.7672
29 1 3.3201 5.0535 -0.0318
30 1 2.9092 3.8824 -2.1420
31 1 3.3469 2.4474 -3.5993
32 1 2.0770 1.5228 -4.4359
33 1 1.6691 3.0419 -3.6021
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396319461.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:10
Heat of formation + Delta-G solvation = -18.588515 kcal
Electronic energy + Delta-G solvation = -17129.428817 eV
Core-core repulsion = 14438.887724 eV
Total energy + Delta-G solvation = -2690.541094 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 262.077 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.68163 -37.34669 -34.88155 -33.41485 -31.82522 -29.03106 -28.11464 -26.54761
-25.93332 -23.25521 -22.02827 -20.67312 -19.36542 -17.69226 -16.45931 -15.97076
-15.55103 -15.38949 -14.89510 -14.39258 -13.72886 -13.39719 -13.24495 -12.78278
-12.61784 -12.36804 -11.79207 -11.69246 -11.48203 -11.34891 -11.14721 -11.09126
-10.90822 -10.60797 -10.50322 -10.25666 -9.79977 -9.60396 -9.30050 -9.15080
-8.20712 -7.15922 -6.63947 -6.54875 -4.27226 1.92233 1.97239 2.81638
2.98936 3.10471 3.13191 3.74115 3.76090 3.87295 4.02564 4.47156
5.20362 5.28520 5.31272 5.34184 5.44039 5.55184 5.61081 5.78610
5.82930 6.07666 6.10474 6.16712 6.31010 6.42829 6.56610 6.76746
6.95581 7.06045 7.15942 7.20710 7.31071 7.72964 7.93877 8.03943
8.52568 8.82971 8.93681 10.33001
Molecular weight = 262.08amu
Principal moments of inertia in cm(-1)
A = 0.026216 B = 0.006480 C = 0.005346
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1067.788212 B = 4319.766830 C = 5235.887537
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.070 4.070
3 C -0.096 4.096
4 C -0.106 4.106
5 S 0.048 5.952
6 C -0.358 4.358
7 C 0.082 3.918
8 C -0.435 4.435
9 H 0.074 0.926
10 C 0.068 3.932
11 N -0.802 5.802
12 Si 0.912 3.088
13 H -0.270 1.270
14 H -0.279 1.279
15 H -0.264 1.264
16 C -0.089 4.089
17 C -0.042 4.042
18 C -0.220 4.220
19 C 0.114 3.886
20 O -0.319 6.319
21 C 0.032 3.968
22 H 0.050 0.950
23 H 0.056 0.944
24 H 0.052 0.948
25 H 0.069 0.931
26 H 0.065 0.935
27 H 0.162 0.838
28 H 0.276 0.724
29 H 0.121 0.879
30 H 0.119 0.881
31 H 0.050 0.950
32 H 0.091 0.909
33 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.288 -3.572 -9.784 10.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.107 4.107
3 C -0.103 4.103
4 C -0.222 4.222
5 S 0.311 5.689
6 C -0.493 4.493
7 C 0.074 3.926
8 C -0.469 4.469
9 H 0.092 0.908
10 C -0.147 4.147
11 N -0.429 5.429
12 Si 0.737 3.263
13 H -0.195 1.195
14 H -0.204 1.204
15 H -0.189 1.189
16 C -0.099 4.099
17 C -0.062 4.062
18 C -0.242 4.242
19 C 0.068 3.932
20 O -0.233 6.233
21 C -0.064 4.064
22 H 0.069 0.931
23 H 0.075 0.925
24 H 0.071 0.929
25 H 0.087 0.913
26 H 0.084 0.916
27 H 0.179 0.821
28 H 0.087 0.913
29 H 0.139 0.861
30 H 0.137 0.863
31 H 0.069 0.931
32 H 0.110 0.890
33 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -3.693 -5.093 -8.801 10.818
hybrid contribution 0.955 2.594 -0.360 2.787
sum -2.738 -2.499 -9.161 9.883
Atomic orbital electron populations
1.21673 0.95340 1.00783 1.02030 1.20255 0.95804 0.92674 1.02014
1.18260 1.07050 0.96492 0.88452 1.22311 1.05199 0.97632 0.97046
1.81829 1.72779 1.20187 0.94081 1.24397 1.24507 0.96972 1.03460
1.17294 0.94066 0.94791 0.86480 1.18923 1.34041 0.94362 0.99536
0.90834 1.25762 0.93878 0.98879 0.96231 1.69865 1.31539 1.32561
1.08912 0.86250 0.78387 0.82482 0.79175 1.19519 1.20425 1.18857
1.19698 1.02349 0.92950 0.94915 1.20646 0.96422 0.98943 0.90208
1.20799 1.10053 0.94883 0.98501 1.18294 0.99093 0.91146 0.84679
1.85982 1.83581 1.41378 1.12367 1.22915 1.00600 0.97351 0.85535
0.93105 0.92526 0.92902 0.91254 0.91590 0.82059 0.91306 0.86143
0.86287 0.93110 0.89049 0.93109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.11 9.89 37.16 0.37 -1.75 16
2 C -0.07 -1.18 5.69 -27.89 -0.16 -1.33 16
3 C -0.10 -1.90 5.18 -104.10 -0.54 -2.44 16
4 C -0.11 -2.41 6.27 -38.59 -0.24 -2.65 16
5 S 0.05 1.08 22.23 -107.50 -2.39 -1.31 16
6 C -0.36 -9.49 9.51 30.09 0.29 -9.20 16
7 C 0.08 2.21 5.69 -106.18 -0.60 1.61 16
8 C -0.44 -11.65 9.07 -38.07 -0.35 -11.99 16
9 H 0.07 1.87 7.69 -52.49 -0.40 1.46 16
10 C 0.07 1.74 5.36 -17.32 -0.09 1.65 16
11 N -0.80 -21.33 10.79 55.54 0.60 -20.73 16
12 Si 0.91 19.15 29.57 -169.99 -5.03 14.13 16
13 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16
14 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16
15 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16
16 C -0.09 -2.17 6.03 -105.18 -0.63 -2.80 16
17 C -0.04 -0.89 9.85 -39.01 -0.38 -1.27 16
18 C -0.22 -4.00 9.01 -39.58 -0.36 -4.36 16
19 C 0.11 2.12 6.65 -39.29 -0.26 1.86 16
20 O -0.32 -5.07 9.49 -19.40 -0.18 -5.25 16
21 C 0.03 0.36 9.81 101.05 0.99 1.35 16
22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
25 H 0.07 1.09 7.50 -51.93 -0.39 0.70 16
26 H 0.07 1.11 7.57 -51.93 -0.39 0.72 16
27 H 0.16 4.53 6.26 -52.49 -0.33 4.20 16
28 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16
29 H 0.12 2.37 7.88 -52.49 -0.41 1.95 16
30 H 0.12 1.76 6.29 -52.49 -0.33 1.43 16
31 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16
32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
33 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16
LS Contribution 290.78 15.07 4.38 4.38
Total: -1.00 -28.71 290.78 -8.47 -37.18
By element:
Atomic # 1 Polarization: 6.82 SS G_CDS: -3.88 Total: 2.94 kcal
Atomic # 6 Polarization: -29.37 SS G_CDS: -1.97 Total: -31.34 kcal
Atomic # 7 Polarization: -21.33 SS G_CDS: 0.60 Total: -20.73 kcal
Atomic # 8 Polarization: -5.07 SS G_CDS: -0.18 Total: -5.25 kcal
Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal
Atomic # 16 Polarization: 1.08 SS G_CDS: -2.39 Total: -1.31 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -28.71 -8.47 -37.18 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396319461.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.596 kcal
(2) G-P(sol) polarization free energy of solvation -28.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.589 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds