Wall clock time and date at job start Mon Mar 30 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.46911 * 2 1 4 4 C 1.39770 * 119.83738 * 90.00375 * 3 2 1 5 5 S 1.75796 * 130.14041 * 359.95238 * 4 3 2 6 6 C 1.69971 * 93.23299 * 180.02562 * 5 4 3 7 7 C 1.36454 * 111.96255 * 0.22930 * 6 5 4 8 8 C 1.40792 * 123.29743 * 179.77053 * 7 6 5 9 9 H 1.08001 * 119.99792 * 202.41120 * 8 7 6 10 10 C 1.39701 * 120.00424 * 22.41678 * 8 7 6 11 11 N 1.31085 * 119.99388 * 11.08595 * 10 8 7 12 12 Si 1.86798 * 120.00288 * 191.08953 * 10 8 7 13 13 H 1.48494 * 109.47058 * 89.99822 * 12 10 8 14 14 H 1.48507 * 109.47073 * 209.99872 * 12 10 8 15 15 H 1.48500 * 109.46847 * 329.99542 * 12 10 8 16 16 C 1.39368 * 119.67313 * 179.97438 * 4 3 2 17 17 C 1.40636 * 119.32365 * 359.93149 * 16 4 3 18 18 C 1.37314 * 120.39999 * 359.97438 * 17 16 4 19 19 C 1.38122 * 119.83817 * 269.86184 * 3 2 1 20 20 O 1.35891 * 119.96717 * 0.06835 * 19 3 2 21 21 C 1.42907 * 117.00093 * 179.97438 * 20 19 3 22 22 H 1.09007 * 109.47123 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47171 * 299.99383 * 1 2 3 24 24 H 1.09003 * 109.47176 * 60.00084 * 1 2 3 25 25 H 1.09004 * 109.46810 * 240.00307 * 2 1 3 26 26 H 1.09000 * 109.47065 * 120.00684 * 2 1 3 27 27 H 1.08001 * 124.02025 * 179.97438 * 6 5 4 28 28 H 0.96997 * 119.99821 * 180.02562 * 11 10 8 29 29 H 1.08001 * 119.79947 * 180.02562 * 17 16 4 30 30 H 1.08000 * 119.89310 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.46410 * 60.00624 * 21 20 19 32 32 H 1.08994 * 109.47067 * 179.97438 * 21 20 19 33 33 H 1.08994 * 109.46936 * 300.00756 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2641 2.0764 1.2124 5 16 2.0626 1.5092 2.8641 6 6 2.5832 2.9815 3.5352 7 6 2.9019 3.8961 2.5740 8 6 3.3558 5.1967 2.8648 9 1 3.2518 5.9818 2.1305 10 6 3.9409 5.4719 4.1032 11 7 4.2662 4.4889 4.9072 12 14 4.2595 7.2403 4.6135 13 1 3.0742 7.7685 5.3353 14 1 5.4459 7.2921 5.5053 15 1 4.5121 8.0662 3.4054 16 6 2.7291 3.3902 1.2084 17 6 2.9593 4.0356 -0.0197 18 6 2.7292 3.3791 -1.2036 19 6 2.2640 2.0677 -1.1981 20 8 2.0376 1.4229 -2.3726 21 6 2.2979 2.1520 -3.5738 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.6496 3.1720 4.5962 28 1 4.6720 4.6799 5.7672 29 1 3.3201 5.0535 -0.0318 30 1 2.9092 3.8824 -2.1420 31 1 3.3469 2.4474 -3.5993 32 1 2.0770 1.5228 -4.4359 33 1 1.6691 3.0419 -3.6021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396319461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:10 Heat of formation + Delta-G solvation = -18.588515 kcal Electronic energy + Delta-G solvation = -17129.428817 eV Core-core repulsion = 14438.887724 eV Total energy + Delta-G solvation = -2690.541094 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.68163 -37.34669 -34.88155 -33.41485 -31.82522 -29.03106 -28.11464 -26.54761 -25.93332 -23.25521 -22.02827 -20.67312 -19.36542 -17.69226 -16.45931 -15.97076 -15.55103 -15.38949 -14.89510 -14.39258 -13.72886 -13.39719 -13.24495 -12.78278 -12.61784 -12.36804 -11.79207 -11.69246 -11.48203 -11.34891 -11.14721 -11.09126 -10.90822 -10.60797 -10.50322 -10.25666 -9.79977 -9.60396 -9.30050 -9.15080 -8.20712 -7.15922 -6.63947 -6.54875 -4.27226 1.92233 1.97239 2.81638 2.98936 3.10471 3.13191 3.74115 3.76090 3.87295 4.02564 4.47156 5.20362 5.28520 5.31272 5.34184 5.44039 5.55184 5.61081 5.78610 5.82930 6.07666 6.10474 6.16712 6.31010 6.42829 6.56610 6.76746 6.95581 7.06045 7.15942 7.20710 7.31071 7.72964 7.93877 8.03943 8.52568 8.82971 8.93681 10.33001 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.026216 B = 0.006480 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.788212 B = 4319.766830 C = 5235.887537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C -0.096 4.096 4 C -0.106 4.106 5 S 0.048 5.952 6 C -0.358 4.358 7 C 0.082 3.918 8 C -0.435 4.435 9 H 0.074 0.926 10 C 0.068 3.932 11 N -0.802 5.802 12 Si 0.912 3.088 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.264 1.264 16 C -0.089 4.089 17 C -0.042 4.042 18 C -0.220 4.220 19 C 0.114 3.886 20 O -0.319 6.319 21 C 0.032 3.968 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.162 0.838 28 H 0.276 0.724 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 -3.572 -9.784 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.103 4.103 4 C -0.222 4.222 5 S 0.311 5.689 6 C -0.493 4.493 7 C 0.074 3.926 8 C -0.469 4.469 9 H 0.092 0.908 10 C -0.147 4.147 11 N -0.429 5.429 12 Si 0.737 3.263 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.189 1.189 16 C -0.099 4.099 17 C -0.062 4.062 18 C -0.242 4.242 19 C 0.068 3.932 20 O -0.233 6.233 21 C -0.064 4.064 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.179 0.821 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.693 -5.093 -8.801 10.818 hybrid contribution 0.955 2.594 -0.360 2.787 sum -2.738 -2.499 -9.161 9.883 Atomic orbital electron populations 1.21673 0.95340 1.00783 1.02030 1.20255 0.95804 0.92674 1.02014 1.18260 1.07050 0.96492 0.88452 1.22311 1.05199 0.97632 0.97046 1.81829 1.72779 1.20187 0.94081 1.24397 1.24507 0.96972 1.03460 1.17294 0.94066 0.94791 0.86480 1.18923 1.34041 0.94362 0.99536 0.90834 1.25762 0.93878 0.98879 0.96231 1.69865 1.31539 1.32561 1.08912 0.86250 0.78387 0.82482 0.79175 1.19519 1.20425 1.18857 1.19698 1.02349 0.92950 0.94915 1.20646 0.96422 0.98943 0.90208 1.20799 1.10053 0.94883 0.98501 1.18294 0.99093 0.91146 0.84679 1.85982 1.83581 1.41378 1.12367 1.22915 1.00600 0.97351 0.85535 0.93105 0.92526 0.92902 0.91254 0.91590 0.82059 0.91306 0.86143 0.86287 0.93110 0.89049 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.89 37.16 0.37 -1.75 16 2 C -0.07 -1.18 5.69 -27.89 -0.16 -1.33 16 3 C -0.10 -1.90 5.18 -104.10 -0.54 -2.44 16 4 C -0.11 -2.41 6.27 -38.59 -0.24 -2.65 16 5 S 0.05 1.08 22.23 -107.50 -2.39 -1.31 16 6 C -0.36 -9.49 9.51 30.09 0.29 -9.20 16 7 C 0.08 2.21 5.69 -106.18 -0.60 1.61 16 8 C -0.44 -11.65 9.07 -38.07 -0.35 -11.99 16 9 H 0.07 1.87 7.69 -52.49 -0.40 1.46 16 10 C 0.07 1.74 5.36 -17.32 -0.09 1.65 16 11 N -0.80 -21.33 10.79 55.54 0.60 -20.73 16 12 Si 0.91 19.15 29.57 -169.99 -5.03 14.13 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 15 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 16 C -0.09 -2.17 6.03 -105.18 -0.63 -2.80 16 17 C -0.04 -0.89 9.85 -39.01 -0.38 -1.27 16 18 C -0.22 -4.00 9.01 -39.58 -0.36 -4.36 16 19 C 0.11 2.12 6.65 -39.29 -0.26 1.86 16 20 O -0.32 -5.07 9.49 -19.40 -0.18 -5.25 16 21 C 0.03 0.36 9.81 101.05 0.99 1.35 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.09 7.50 -51.93 -0.39 0.70 16 26 H 0.07 1.11 7.57 -51.93 -0.39 0.72 16 27 H 0.16 4.53 6.26 -52.49 -0.33 4.20 16 28 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 29 H 0.12 2.37 7.88 -52.49 -0.41 1.95 16 30 H 0.12 1.76 6.29 -52.49 -0.33 1.43 16 31 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -28.71 290.78 -8.47 -37.18 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.88 Total: 2.94 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: -1.97 Total: -31.34 kcal Atomic # 7 Polarization: -21.33 SS G_CDS: 0.60 Total: -20.73 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.18 Total: -5.25 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.39 Total: -1.31 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.71 -8.47 -37.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.596 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds