Wall clock time and date at job start Mon Mar 30 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.46911 * 2 1 4 4 C 1.39770 * 119.83738 * 90.00375 * 3 2 1 5 5 S 1.75796 * 130.14041 * 359.95238 * 4 3 2 6 6 C 1.69971 * 93.23299 * 180.02562 * 5 4 3 7 7 C 1.36454 * 111.96255 * 0.22930 * 6 5 4 8 8 C 1.40792 * 123.29743 * 179.77053 * 7 6 5 9 9 H 1.08001 * 119.99792 * 202.41120 * 8 7 6 10 10 C 1.39701 * 120.00424 * 22.41678 * 8 7 6 11 11 N 1.31085 * 119.99388 * 11.08595 * 10 8 7 12 12 Si 1.86798 * 120.00288 * 191.08953 * 10 8 7 13 13 H 1.48494 * 109.47058 * 89.99822 * 12 10 8 14 14 H 1.48507 * 109.47073 * 209.99872 * 12 10 8 15 15 H 1.48500 * 109.46847 * 329.99542 * 12 10 8 16 16 C 1.39368 * 119.67313 * 179.97438 * 4 3 2 17 17 C 1.40636 * 119.32365 * 359.93149 * 16 4 3 18 18 C 1.37314 * 120.39999 * 359.97438 * 17 16 4 19 19 C 1.38122 * 119.83817 * 269.86184 * 3 2 1 20 20 O 1.35891 * 119.96717 * 0.06835 * 19 3 2 21 21 C 1.42907 * 117.00093 * 179.97438 * 20 19 3 22 22 H 1.09007 * 109.47123 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47171 * 299.99383 * 1 2 3 24 24 H 1.09003 * 109.47176 * 60.00084 * 1 2 3 25 25 H 1.09004 * 109.46810 * 240.00307 * 2 1 3 26 26 H 1.09000 * 109.47065 * 120.00684 * 2 1 3 27 27 H 1.08001 * 124.02025 * 179.97438 * 6 5 4 28 28 H 0.96997 * 119.99821 * 180.02562 * 11 10 8 29 29 H 1.08001 * 119.79947 * 180.02562 * 17 16 4 30 30 H 1.08000 * 119.89310 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.46410 * 60.00624 * 21 20 19 32 32 H 1.08994 * 109.47067 * 179.97438 * 21 20 19 33 33 H 1.08994 * 109.46936 * 300.00756 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2641 2.0764 1.2124 5 16 2.0626 1.5092 2.8641 6 6 2.5832 2.9815 3.5352 7 6 2.9019 3.8961 2.5740 8 6 3.3558 5.1967 2.8648 9 1 3.2518 5.9818 2.1305 10 6 3.9409 5.4719 4.1032 11 7 4.2662 4.4889 4.9072 12 14 4.2595 7.2403 4.6135 13 1 3.0742 7.7685 5.3353 14 1 5.4459 7.2921 5.5053 15 1 4.5121 8.0662 3.4054 16 6 2.7291 3.3902 1.2084 17 6 2.9593 4.0356 -0.0197 18 6 2.7292 3.3791 -1.2036 19 6 2.2640 2.0677 -1.1981 20 8 2.0376 1.4229 -2.3726 21 6 2.2979 2.1520 -3.5738 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.6496 3.1720 4.5962 28 1 4.6720 4.6799 5.7672 29 1 3.3201 5.0535 -0.0318 30 1 2.9092 3.8824 -2.1420 31 1 3.3469 2.4474 -3.5993 32 1 2.0770 1.5228 -4.4359 33 1 1.6691 3.0419 -3.6021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396319461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:09 Heat of formation + Delta-G solvation = -33.662202 kcal Electronic energy + Delta-G solvation = -17130.082462 eV Core-core repulsion = 14438.887724 eV Total energy + Delta-G solvation = -2691.194738 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12279 -38.85770 -36.57935 -34.95338 -33.58875 -30.50401 -29.60925 -27.84043 -27.76967 -24.68048 -23.65833 -22.22308 -21.11083 -19.13865 -18.32613 -17.63095 -17.01930 -16.60251 -16.53764 -15.93250 -15.08057 -14.86734 -14.79267 -14.32448 -14.09443 -13.85188 -13.40643 -13.29865 -13.01668 -12.77827 -12.59902 -12.52489 -12.42473 -12.24040 -12.00243 -11.79435 -11.42920 -11.26493 -11.05598 -10.94979 -9.91194 -8.86099 -8.54417 -8.32655 -6.27445 0.26660 0.36969 1.12611 1.30305 1.37392 1.50581 1.93417 1.99942 2.23260 2.53961 2.76383 3.39672 3.83869 4.03447 4.14683 4.31099 4.49192 4.50752 4.54516 4.56602 4.65043 4.70476 4.80707 5.04967 5.06680 5.19947 5.22273 5.36512 5.42717 5.46828 5.50984 5.71298 5.85289 6.01239 6.55483 6.56328 6.85411 6.97050 8.42278 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.026216 B = 0.006480 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.788212 B = 4319.766830 C = 5235.887537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 C -0.109 4.109 4 C -0.118 4.118 5 S 0.070 5.930 6 C -0.396 4.396 7 C 0.060 3.940 8 C -0.468 4.468 9 H 0.077 0.923 10 C 0.023 3.977 11 N -0.835 5.835 12 Si 0.988 3.012 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.255 1.255 16 C -0.130 4.130 17 C -0.055 4.055 18 C -0.205 4.205 19 C 0.128 3.872 20 O -0.322 6.322 21 C 0.018 3.982 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.136 0.864 28 H 0.282 0.718 29 H 0.127 0.873 30 H 0.160 0.840 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.474 -3.413 -12.608 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 C -0.116 4.116 4 C -0.233 4.233 5 S 0.333 5.667 6 C -0.532 4.532 7 C 0.051 3.949 8 C -0.500 4.500 9 H 0.096 0.904 10 C -0.190 4.190 11 N -0.463 5.463 12 Si 0.809 3.191 13 H -0.190 1.190 14 H -0.196 1.196 15 H -0.178 1.178 16 C -0.140 4.140 17 C -0.075 4.075 18 C -0.226 4.226 19 C 0.080 3.920 20 O -0.236 6.236 21 C -0.077 4.077 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.153 0.847 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.178 0.822 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.885 -4.947 -11.657 13.246 hybrid contribution 0.996 2.462 0.277 2.671 sum -2.889 -2.485 -11.380 12.001 Atomic orbital electron populations 1.21633 0.93893 1.02405 1.01335 1.20314 0.96980 0.90797 1.02490 1.18629 1.06910 0.98012 0.88057 1.22506 1.05555 0.97533 0.97717 1.81359 1.73078 1.17918 0.94376 1.24290 1.26742 0.99548 1.02577 1.17762 0.93720 0.95189 0.88255 1.19274 1.35236 0.94837 1.00694 0.90445 1.26741 0.93055 1.03479 0.95680 1.69979 1.31943 1.34953 1.09409 0.85109 0.78417 0.76590 0.78994 1.19036 1.19554 1.17821 1.19834 1.04969 0.94210 0.94937 1.20824 0.96985 0.99539 0.90126 1.21180 1.07720 0.94704 0.99007 1.18394 0.97035 0.91010 0.85543 1.86001 1.82989 1.41989 1.12578 1.23348 1.01615 0.98467 0.84242 0.90359 0.94145 0.92619 0.89701 0.92099 0.84678 0.90776 0.85500 0.82211 0.92070 0.85837 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.89 71.98 0.71 -3.06 16 2 C -0.07 -2.17 5.69 29.85 0.17 -2.00 16 3 C -0.11 -4.21 5.18 -19.52 -0.10 -4.31 16 4 C -0.12 -5.41 6.27 22.91 0.14 -5.27 16 5 S 0.07 3.29 22.23 -56.49 -1.26 2.04 16 6 C -0.40 -22.32 9.51 67.40 0.64 -21.68 16 7 C 0.06 3.37 5.69 -20.87 -0.12 3.25 16 8 C -0.47 -25.99 9.07 23.25 0.21 -25.78 16 9 H 0.08 4.06 7.69 -2.91 -0.02 4.03 16 10 C 0.02 1.20 5.36 85.16 0.46 1.66 16 11 N -0.84 -46.39 10.79 21.80 0.24 -46.16 16 12 Si 0.99 39.86 29.57 68.60 2.03 41.89 16 13 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 14 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 15 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 16 C -0.13 -6.48 6.03 -20.22 -0.12 -6.61 16 17 C -0.06 -2.28 9.85 22.64 0.22 -2.06 16 18 C -0.20 -6.88 9.01 22.27 0.20 -6.68 16 19 C 0.13 4.39 6.65 22.46 0.15 4.54 16 20 O -0.32 -8.91 9.49 -92.32 -0.88 -9.78 16 21 C 0.02 0.31 9.81 113.37 1.11 1.42 16 22 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 2.42 7.50 -2.38 -0.02 2.41 16 26 H 0.06 1.98 7.57 -2.39 -0.02 1.96 16 27 H 0.14 8.17 6.26 -2.91 -0.02 8.15 16 28 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 29 H 0.13 4.95 7.88 -2.91 -0.02 4.93 16 30 H 0.16 3.98 6.29 -2.91 -0.02 3.96 16 31 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 32 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 Total: -1.00 -65.31 290.78 4.93 -60.38 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 1.12 Total: 18.19 kcal Atomic # 6 Polarization: -70.24 SS G_CDS: 3.68 Total: -66.56 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.24 Total: -46.16 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.88 Total: -9.78 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.26 Total: 2.04 kcal Total: -65.31 4.93 -60.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.717 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds