Wall clock time and date at job start Mon Mar 30 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.46721 * 2 1 4 4 C 1.38852 * 120.01468 * 269.97737 * 3 2 1 5 5 S 1.76048 * 130.39796 * 0.02562 * 4 3 2 6 6 C 1.75457 * 91.60678 * 180.02562 * 5 4 3 7 7 C 1.32989 * 110.82303 * 359.97438 * 6 5 4 8 8 O 1.36124 * 122.12967 * 179.97438 * 7 6 5 9 9 C 1.42898 * 116.99722 * 0.02562 * 8 7 6 10 10 C 1.40362 * 120.15003 * 180.02562 * 4 3 2 11 11 C 1.42004 * 119.02311 * 359.97438 * 10 4 3 12 12 C 1.35169 * 120.87163 * 359.77178 * 11 10 4 13 13 C 1.40393 * 120.01576 * 90.00061 * 3 2 1 14 14 C 1.40966 * 120.19867 * 359.95608 * 13 3 2 15 15 H 1.08005 * 119.99556 * 333.64732 * 14 13 3 16 16 C 1.39814 * 119.99955 * 153.64550 * 14 13 3 17 17 N 1.30920 * 120.00313 * 335.03018 * 16 14 13 18 18 Si 1.86798 * 119.99813 * 155.02976 * 16 14 13 19 19 H 1.48500 * 109.47270 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47324 * 300.00181 * 18 16 14 21 21 H 1.48504 * 109.47320 * 59.99996 * 18 16 14 22 22 H 1.09006 * 109.47302 * 299.99536 * 1 2 3 23 23 H 1.08996 * 109.47367 * 60.00295 * 1 2 3 24 24 H 1.09005 * 109.46644 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46861 * 240.00121 * 2 1 3 26 26 H 1.08996 * 109.47367 * 119.99705 * 2 1 3 27 27 H 1.08006 * 124.59071 * 179.97438 * 6 5 4 28 28 H 1.09005 * 109.47322 * 60.00437 * 9 8 7 29 29 H 1.09003 * 109.46647 * 180.02562 * 9 8 7 30 30 H 1.08998 * 109.47252 * 299.99808 * 9 8 7 31 31 H 1.08001 * 119.56170 * 180.02562 * 11 10 4 32 32 H 1.08003 * 119.80471 * 180.26707 * 12 11 10 33 33 H 0.97007 * 119.99598 * 354.20614 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2641 2.0755 -1.2023 5 16 2.0675 1.5191 -2.8609 6 6 2.6141 3.0609 -3.4952 7 6 2.9106 3.9003 -2.5072 8 8 3.3590 5.1641 -2.7410 9 6 3.5003 5.5601 -4.1067 10 6 2.7324 3.3987 -1.2056 11 6 2.9625 4.0512 0.0345 12 6 2.7322 3.4165 1.2054 13 6 2.2663 2.0830 1.2156 14 6 2.0320 1.4231 2.4391 15 1 1.3082 0.6232 2.4912 16 6 2.7368 1.8040 3.5850 17 7 3.9058 2.3826 3.4724 18 14 2.0103 1.4874 5.2765 19 1 2.9467 1.9815 6.3178 20 1 0.7133 2.2000 5.3996 21 1 1.7931 0.0295 5.4571 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.6984 3.2966 -4.5459 28 1 2.5333 5.4954 -4.6057 29 1 3.8648 6.5864 -4.1515 30 1 4.2110 4.9004 -4.6046 31 1 3.3225 5.0695 0.0421 32 1 2.9090 3.9306 2.1386 33 1 4.3210 2.4714 2.6003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396319580.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:55 Heat of formation + Delta-G solvation = -23.915558 kcal Electronic energy + Delta-G solvation = -17253.488760 eV Core-core repulsion = 14562.716668 eV Total energy + Delta-G solvation = -2690.772092 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.34023 -37.89512 -34.75807 -33.48988 -31.94714 -28.70537 -28.27688 -27.34579 -25.14408 -22.93645 -21.98227 -20.25749 -19.72043 -18.05189 -16.59409 -16.20153 -15.32778 -15.23683 -14.84057 -14.11549 -13.83295 -13.61585 -13.08873 -12.64831 -12.50924 -12.32072 -11.93858 -11.78618 -11.48825 -11.33888 -11.17037 -10.81036 -10.69089 -10.53987 -10.46211 -10.27206 -9.74859 -9.66538 -9.38225 -9.14368 -8.20517 -7.56436 -7.49054 -6.57585 -4.64015 1.82131 2.57049 2.62155 2.96016 2.97258 3.05436 3.24025 3.42800 3.83443 3.90127 4.35166 5.19723 5.31444 5.38109 5.55642 5.68318 5.81245 5.88499 6.09630 6.22344 6.24984 6.44673 6.55358 6.59594 6.66871 6.72232 6.91184 6.93580 7.12124 7.30823 7.47449 7.54139 7.56881 7.89102 7.95094 7.98567 8.46867 8.57360 9.75325 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.006817 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.395549 B = 4106.540824 C = 5033.988259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.190 4.190 4 C -0.032 4.032 5 S 0.022 5.978 6 C -0.387 4.387 7 C 0.177 3.823 8 O -0.313 6.313 9 C 0.033 3.967 10 C -0.227 4.227 11 C -0.033 4.033 12 C -0.198 4.198 13 C 0.119 3.881 14 C -0.480 4.480 15 H 0.089 0.911 16 C 0.034 3.966 17 N -0.775 5.775 18 Si 1.066 2.934 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.272 1.272 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 0.497 -5.396 5.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C -0.199 4.199 4 C -0.147 4.147 5 S 0.279 5.721 6 C -0.520 4.520 7 C 0.123 3.877 8 O -0.227 6.227 9 C -0.063 4.063 10 C -0.233 4.233 11 C -0.054 4.054 12 C -0.217 4.217 13 C 0.113 3.887 14 C -0.507 4.507 15 H 0.107 0.893 16 C -0.190 4.190 17 N -0.396 5.396 18 Si 0.888 3.112 19 H -0.196 1.196 20 H -0.197 1.197 21 H -0.197 1.197 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.163 0.837 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.180 -0.320 -4.424 4.942 hybrid contribution 0.285 1.188 -1.613 2.024 sum -1.895 0.868 -6.037 6.387 Atomic orbital electron populations 1.21715 0.96658 0.99831 1.01714 1.20069 0.94657 0.93799 1.00812 1.18847 1.15437 0.95878 0.89749 1.21845 1.01878 0.95605 0.95369 1.83385 1.74914 1.15278 0.98496 1.24133 1.26946 0.99930 1.00961 1.17696 0.94100 0.83175 0.92759 1.86044 1.81472 1.28189 1.26996 1.22891 1.00838 1.00389 0.82137 1.16909 1.19944 0.95586 0.90835 1.20243 0.96692 0.97617 0.90811 1.20814 1.08616 0.95489 0.96785 1.17437 0.88568 0.90801 0.91900 1.20723 1.19956 1.16610 0.93385 0.89322 1.27231 0.93999 0.91770 1.06006 1.70498 1.11819 1.25478 1.31816 0.83604 0.76695 0.77874 0.72987 1.19596 1.19666 1.19740 0.92561 0.93478 0.93982 0.93662 0.91244 0.83670 0.93267 0.89053 0.93264 0.88218 0.86922 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.86 37.16 0.37 -2.23 16 2 C -0.06 -1.15 5.31 -27.88 -0.15 -1.30 16 3 C -0.19 -4.48 5.22 -103.58 -0.54 -5.02 16 4 C -0.03 -0.75 6.29 -38.56 -0.24 -0.99 16 5 S 0.02 0.44 22.57 -107.50 -2.43 -1.98 16 6 C -0.39 -7.65 9.97 28.91 0.29 -7.36 16 7 C 0.18 3.82 6.66 -40.50 -0.27 3.55 16 8 O -0.31 -6.04 10.48 -20.13 -0.21 -6.25 16 9 C 0.03 0.45 9.91 101.05 1.00 1.45 16 10 C -0.23 -5.40 5.89 -106.76 -0.63 -6.03 16 11 C -0.03 -0.78 9.91 -39.23 -0.39 -1.17 16 12 C -0.20 -4.82 7.83 -39.53 -0.31 -5.13 16 13 C 0.12 2.95 5.27 -106.91 -0.56 2.38 16 14 C -0.48 -11.46 8.01 -37.96 -0.30 -11.76 16 15 H 0.09 2.03 6.59 -52.48 -0.35 1.69 16 16 C 0.03 0.79 4.93 -17.35 -0.09 0.71 16 17 N -0.77 -18.96 12.34 55.54 0.69 -18.28 16 18 Si 1.07 19.61 30.00 -169.99 -5.10 14.51 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 22 H 0.06 1.06 7.83 -51.93 -0.41 0.65 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.89 7.59 -51.93 -0.39 0.49 16 26 H 0.07 1.44 6.77 -51.93 -0.35 1.09 16 27 H 0.15 2.46 6.88 -52.48 -0.36 2.10 16 28 H 0.05 0.62 7.82 -51.93 -0.41 0.21 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.62 7.82 -51.93 -0.41 0.22 16 31 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.11 2.75 6.54 -52.48 -0.34 2.41 16 33 H 0.30 7.69 6.70 -40.82 -0.27 7.41 16 LS Contribution 288.79 15.07 4.35 4.35 Total: -1.00 -26.42 288.79 -8.30 -34.72 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.77 Total: 5.84 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: -1.82 Total: -32.91 kcal Atomic # 7 Polarization: -18.96 SS G_CDS: 0.69 Total: -18.28 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.21 Total: -6.25 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.10 Total: 14.51 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -2.43 Total: -1.98 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.42 -8.30 -34.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319580.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.807 kcal (2) G-P(sol) polarization free energy of solvation -26.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds