Wall clock time and date at job start Mon Mar 30 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.46721 * 2 1 4 4 C 1.38852 * 120.01468 * 269.97737 * 3 2 1 5 5 S 1.76048 * 130.39796 * 0.02562 * 4 3 2 6 6 C 1.75457 * 91.60678 * 180.02562 * 5 4 3 7 7 C 1.32989 * 110.82303 * 359.97438 * 6 5 4 8 8 O 1.36124 * 122.12967 * 179.97438 * 7 6 5 9 9 C 1.42898 * 116.99722 * 0.02562 * 8 7 6 10 10 C 1.40362 * 120.15003 * 180.02562 * 4 3 2 11 11 C 1.42004 * 119.02311 * 359.97438 * 10 4 3 12 12 C 1.35169 * 120.87163 * 359.77178 * 11 10 4 13 13 C 1.40393 * 120.01576 * 90.00061 * 3 2 1 14 14 C 1.40966 * 120.19867 * 359.95608 * 13 3 2 15 15 H 1.08005 * 119.99556 * 333.64732 * 14 13 3 16 16 C 1.39814 * 119.99955 * 153.64550 * 14 13 3 17 17 N 1.30920 * 120.00313 * 335.03018 * 16 14 13 18 18 Si 1.86798 * 119.99813 * 155.02976 * 16 14 13 19 19 H 1.48500 * 109.47270 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47324 * 300.00181 * 18 16 14 21 21 H 1.48504 * 109.47320 * 59.99996 * 18 16 14 22 22 H 1.09006 * 109.47302 * 299.99536 * 1 2 3 23 23 H 1.08996 * 109.47367 * 60.00295 * 1 2 3 24 24 H 1.09005 * 109.46644 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46861 * 240.00121 * 2 1 3 26 26 H 1.08996 * 109.47367 * 119.99705 * 2 1 3 27 27 H 1.08006 * 124.59071 * 179.97438 * 6 5 4 28 28 H 1.09005 * 109.47322 * 60.00437 * 9 8 7 29 29 H 1.09003 * 109.46647 * 180.02562 * 9 8 7 30 30 H 1.08998 * 109.47252 * 299.99808 * 9 8 7 31 31 H 1.08001 * 119.56170 * 180.02562 * 11 10 4 32 32 H 1.08003 * 119.80471 * 180.26707 * 12 11 10 33 33 H 0.97007 * 119.99598 * 354.20614 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2641 2.0755 -1.2023 5 16 2.0675 1.5191 -2.8609 6 6 2.6141 3.0609 -3.4952 7 6 2.9106 3.9003 -2.5072 8 8 3.3590 5.1641 -2.7410 9 6 3.5003 5.5601 -4.1067 10 6 2.7324 3.3987 -1.2056 11 6 2.9625 4.0512 0.0345 12 6 2.7322 3.4165 1.2054 13 6 2.2663 2.0830 1.2156 14 6 2.0320 1.4231 2.4391 15 1 1.3082 0.6232 2.4912 16 6 2.7368 1.8040 3.5850 17 7 3.9058 2.3826 3.4724 18 14 2.0103 1.4874 5.2765 19 1 2.9467 1.9815 6.3178 20 1 0.7133 2.2000 5.3996 21 1 1.7931 0.0295 5.4571 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.6984 3.2966 -4.5459 28 1 2.5333 5.4954 -4.6057 29 1 3.8648 6.5864 -4.1515 30 1 4.2110 4.9004 -4.6046 31 1 3.3225 5.0695 0.0421 32 1 2.9090 3.9306 2.1386 33 1 4.3210 2.4714 2.6003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396319580.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:55 Heat of formation + Delta-G solvation = -36.423405 kcal Electronic energy + Delta-G solvation = -17254.031141 eV Core-core repulsion = 14562.716668 eV Total energy + Delta-G solvation = -2691.314473 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93830 -39.52572 -36.45363 -35.14913 -33.66073 -30.41833 -29.96452 -28.58643 -26.85001 -24.56842 -23.68862 -21.98071 -21.31754 -19.80376 -18.23774 -17.73052 -16.88733 -16.66304 -16.53858 -15.69215 -15.46113 -15.12701 -14.71229 -14.24596 -14.09896 -14.04077 -13.54170 -13.31880 -12.96854 -12.78022 -12.74130 -12.36815 -12.16006 -12.07663 -11.94195 -11.86707 -11.38307 -11.35902 -11.10141 -10.87668 -9.92943 -9.36020 -9.28304 -8.23893 -6.46456 0.09085 0.77568 0.90683 1.31225 1.41372 1.54753 1.79700 1.83570 2.30944 2.54813 2.60467 3.38184 3.98821 4.16343 4.26776 4.29474 4.36977 4.45343 4.59459 4.67074 4.68135 4.77710 4.86896 4.96233 4.99943 5.09082 5.24452 5.28300 5.44464 5.55860 5.65861 5.73889 5.78127 6.08846 6.14157 6.45614 6.65425 6.78791 7.91225 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.006817 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.395549 B = 4106.540824 C = 5033.988259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 C -0.201 4.201 4 C -0.062 4.062 5 S 0.060 5.940 6 C -0.372 4.372 7 C 0.159 3.841 8 O -0.332 6.332 9 C 0.023 3.977 10 C -0.245 4.245 11 C -0.044 4.044 12 C -0.210 4.210 13 C 0.094 3.906 14 C -0.501 4.501 15 H 0.094 0.906 16 C 0.004 3.996 17 N -0.799 5.799 18 Si 1.116 2.884 19 H -0.274 1.274 20 H -0.262 1.262 21 H -0.253 1.253 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.179 0.821 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 0.016 -6.898 7.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C -0.210 4.210 4 C -0.177 4.177 5 S 0.317 5.683 6 C -0.505 4.505 7 C 0.104 3.896 8 O -0.247 6.247 9 C -0.072 4.072 10 C -0.250 4.250 11 C -0.064 4.064 12 C -0.230 4.230 13 C 0.088 3.912 14 C -0.529 4.529 15 H 0.112 0.888 16 C -0.215 4.215 17 N -0.420 5.420 18 Si 0.932 3.068 19 H -0.198 1.198 20 H -0.187 1.187 21 H -0.176 1.176 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.197 0.803 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.998 -0.805 -5.960 6.720 hybrid contribution 0.568 1.417 -1.427 2.090 sum -2.430 0.613 -7.387 7.800 Atomic orbital electron populations 1.21635 0.94785 1.01641 1.01029 1.20085 0.96218 0.92005 1.00795 1.19226 1.14951 0.97224 0.89629 1.22201 1.02204 0.96043 0.97286 1.83174 1.74283 1.15112 0.95699 1.24588 1.24422 0.99131 1.02334 1.17646 0.95255 0.84637 0.92089 1.86018 1.81198 1.26938 1.30501 1.23287 1.02043 1.02241 0.79602 1.17341 1.19548 0.96166 0.91982 1.20397 0.96875 0.98145 0.90983 1.20797 1.09659 0.95869 0.96668 1.17754 0.89250 0.91156 0.93018 1.20870 1.20752 1.17428 0.93808 0.88849 1.28560 0.93359 0.90374 1.09206 1.70608 1.13001 1.27787 1.30617 0.83012 0.76122 0.78930 0.68744 1.19842 1.18679 1.17649 0.93651 0.93700 0.90890 0.92844 0.91933 0.80326 0.92005 0.86115 0.92120 0.87337 0.88037 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.86 71.98 0.71 -3.99 16 2 C -0.05 -2.17 5.31 29.85 0.16 -2.01 16 3 C -0.20 -9.61 5.22 -19.19 -0.10 -9.71 16 4 C -0.06 -2.91 6.29 22.93 0.14 -2.77 16 5 S 0.06 2.28 22.57 -56.49 -1.28 1.01 16 6 C -0.37 -13.65 9.97 66.65 0.66 -12.98 16 7 C 0.16 6.60 6.66 21.68 0.14 6.75 16 8 O -0.33 -12.26 10.48 -94.96 -0.99 -13.25 16 9 C 0.02 0.54 9.91 113.37 1.12 1.67 16 10 C -0.24 -11.66 5.89 -21.25 -0.13 -11.79 16 11 C -0.04 -2.13 9.91 22.50 0.22 -1.90 16 12 C -0.21 -10.73 7.83 22.31 0.17 -10.56 16 13 C 0.09 4.81 5.27 -21.34 -0.11 4.70 16 14 C -0.50 -24.57 8.01 23.32 0.19 -24.38 16 15 H 0.09 4.34 6.59 -2.91 -0.02 4.33 16 16 C 0.00 0.17 4.93 85.21 0.42 0.59 16 17 N -0.80 -40.59 12.34 21.81 0.27 -40.32 16 18 Si 1.12 39.47 30.00 68.60 2.06 41.53 16 19 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 21 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 22 H 0.04 1.67 7.83 -2.38 -0.02 1.65 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 25 H 0.05 2.04 7.59 -2.39 -0.02 2.02 16 26 H 0.06 2.59 6.77 -2.39 -0.02 2.58 16 27 H 0.18 5.25 6.88 -2.91 -0.02 5.23 16 28 H 0.06 1.33 7.82 -2.38 -0.02 1.31 16 29 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.32 7.82 -2.39 -0.02 1.30 16 31 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 32 H 0.10 5.27 6.54 -2.91 -0.02 5.25 16 33 H 0.29 15.36 6.70 -92.70 -0.62 14.73 16 Total: -1.00 -57.81 288.79 4.94 -52.87 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 1.27 Total: 24.56 kcal Atomic # 6 Polarization: -70.00 SS G_CDS: 3.61 Total: -66.39 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.27 Total: -40.32 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.99 Total: -13.25 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.06 Total: 41.53 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.28 Total: 1.01 kcal Total: -57.81 4.94 -52.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319580.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.452 kcal (2) G-P(sol) polarization free energy of solvation -57.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds