Wall clock time and date at job start Mon Mar 30 2020 06:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47357 * 2 1 4 4 C 1.31705 * 124.24313 * 89.72177 * 3 2 1 5 5 C 1.45565 * 114.89002 * 179.80793 * 4 3 2 6 6 C 1.40521 * 129.19638 * 180.17399 * 5 4 3 7 7 C 1.39908 * 119.98991 * 180.31189 * 6 5 4 8 8 C 1.41272 * 120.06207 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00412 * 204.87022 * 8 7 6 10 10 C 1.39860 * 119.99743 * 24.87545 * 8 7 6 11 11 N 1.30893 * 120.00372 * 18.01940 * 10 8 7 12 12 Si 1.86800 * 119.99858 * 198.02332 * 10 8 7 13 13 H 1.48500 * 109.47127 * 59.99843 * 12 10 8 14 14 H 1.48497 * 109.47078 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47075 * 299.99987 * 12 10 8 16 16 C 1.41157 * 119.88076 * 359.97438 * 7 6 5 17 17 C 1.35687 * 120.10314 * 359.97438 * 16 7 6 18 18 C 1.50691 * 119.58573 * 179.97438 * 17 16 7 19 19 O 1.42906 * 109.47476 * 0.03958 * 18 17 16 20 20 C 1.40153 * 111.77745 * 0.46614 * 5 4 3 21 21 S 1.75263 * 124.24111 * 270.02296 * 3 2 1 22 22 H 1.08992 * 109.46981 * 300.00767 * 1 2 3 23 23 H 1.09008 * 109.46481 * 60.00320 * 1 2 3 24 24 H 1.09002 * 109.46945 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46647 * 120.00133 * 2 1 3 26 26 H 1.08994 * 109.47492 * 239.99310 * 2 1 3 27 27 H 1.08001 * 122.55344 * 359.97438 * 4 3 2 28 28 H 1.08008 * 120.00493 * 0.28365 * 6 5 4 29 29 H 0.96996 * 120.00075 * 179.97438 * 11 10 8 30 30 H 1.08005 * 119.95365 * 179.97438 * 16 7 6 31 31 H 1.09004 * 109.47115 * 120.03607 * 18 17 16 32 32 H 1.08997 * 109.47460 * 240.03594 * 18 17 16 33 33 H 0.96698 * 114.00029 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2745 2.1213 1.0887 5 6 2.7586 3.4735 0.8522 6 6 3.1097 4.4665 1.7824 7 6 3.5513 5.7172 1.3371 8 6 3.9041 6.7168 2.2710 9 1 3.8549 7.7587 1.9913 10 6 4.3173 6.3570 3.5578 11 7 4.7161 5.1339 3.7992 12 14 4.2999 7.6220 4.9322 13 1 2.9154 8.1226 5.1267 14 1 4.7798 6.9938 6.1892 15 1 5.1901 8.7551 4.5732 16 6 3.6437 5.9784 -0.0470 17 6 3.3055 5.0189 -0.9447 18 6 3.4080 5.3106 -2.4196 19 8 3.8794 6.6462 -2.6095 20 6 2.8587 3.7580 -0.5165 21 16 2.3607 2.3507 -1.4489 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8898 27 1 2.1277 1.7218 2.0814 28 1 3.0382 4.2645 2.8410 29 1 5.0030 4.8845 4.6915 30 1 3.9840 6.9436 -0.3920 31 1 4.1046 4.6104 -2.8809 32 1 2.4261 5.2029 -2.8804 33 1 3.9695 6.9033 -3.5373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396319780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:38 Heat of formation + Delta-G solvation = -32.738037 kcal Electronic energy + Delta-G solvation = -16821.410449 eV Core-core repulsion = 14130.255786 eV Total energy + Delta-G solvation = -2691.154663 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.36184 -36.51754 -35.44179 -33.73410 -31.95468 -30.26854 -27.90665 -25.61825 -24.99287 -23.58670 -21.32355 -19.88761 -19.40720 -17.15000 -16.66792 -16.19647 -15.21291 -14.68016 -14.47970 -14.38064 -13.93548 -13.40654 -13.28022 -12.97020 -12.59213 -12.07893 -11.94288 -11.61351 -11.51226 -11.23327 -11.04361 -10.89697 -10.77822 -10.59489 -10.18618 -10.05613 -9.74347 -9.62699 -9.48140 -9.01745 -8.19039 -7.30057 -6.80253 -6.68339 -4.36214 1.90547 2.52151 2.62857 3.03425 3.05539 3.06330 3.10872 3.45598 3.90665 4.51435 4.70405 5.08500 5.28329 5.48060 5.52677 5.64070 5.77585 5.86283 5.95461 5.98269 6.06024 6.17582 6.32921 6.45038 6.68240 6.85263 6.93833 7.12088 7.21214 7.47984 7.54302 7.75818 7.94193 7.94897 8.20212 8.53853 8.81292 8.83954 10.14019 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.006926 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.479194 B = 4041.721353 C = 5415.419543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.172 4.172 4 C -0.106 4.106 5 C -0.051 4.051 6 C -0.143 4.143 7 C 0.103 3.897 8 C -0.455 4.455 9 H 0.081 0.919 10 C 0.075 3.925 11 N -0.790 5.790 12 Si 0.910 3.090 13 H -0.263 1.263 14 H -0.278 1.278 15 H -0.265 1.265 16 C -0.150 4.150 17 C -0.050 4.050 18 C 0.123 3.877 19 O -0.563 6.563 20 C -0.221 4.221 21 S -0.008 6.008 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.282 0.718 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 -5.050 -5.878 8.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.287 4.287 4 C -0.137 4.137 5 C -0.056 4.056 6 C -0.166 4.166 7 C 0.100 3.900 8 C -0.485 4.485 9 H 0.099 0.901 10 C -0.143 4.143 11 N -0.415 5.415 12 Si 0.734 3.266 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.189 1.189 16 C -0.170 4.170 17 C -0.054 4.054 18 C 0.046 3.954 19 O -0.367 6.367 20 C -0.336 4.336 21 S 0.252 5.748 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.130 -5.568 -6.532 9.525 hybrid contribution 0.254 0.746 1.560 1.748 sum -3.876 -4.821 -4.972 7.936 Atomic orbital electron populations 1.21768 0.94954 1.01097 1.02489 1.20041 0.95740 0.90746 1.02351 1.23427 1.09329 0.99752 0.96166 1.20899 1.01162 0.93597 0.98014 1.19015 1.01120 0.93230 0.92265 1.21160 1.04298 0.93184 0.97936 1.17449 0.88848 0.92585 0.91148 1.19507 1.38943 0.94560 0.95448 0.90122 1.25915 0.92425 0.96076 0.99911 1.69842 1.29379 1.19229 1.23047 0.86340 0.79844 0.81086 0.79340 1.18762 1.20320 1.18916 1.20665 1.05048 0.98732 0.92592 1.18235 1.02227 0.92174 0.92800 1.20831 0.96825 0.82898 0.94871 1.86565 1.89392 1.30745 1.29962 1.21477 1.19617 0.97194 0.95276 1.83134 1.74473 1.07437 1.09776 0.92432 0.92519 0.92736 0.90785 0.91429 0.85525 0.85888 0.90697 0.86707 0.93551 0.93553 0.78455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.90 37.16 0.37 -1.42 16 2 C -0.05 -0.69 6.36 -27.88 -0.18 -0.87 16 3 C -0.17 -3.15 5.62 -36.19 -0.20 -3.36 16 4 C -0.11 -2.18 10.21 -38.54 -0.39 -2.58 16 5 C -0.05 -1.23 6.03 -105.40 -0.64 -1.87 16 6 C -0.14 -3.78 8.75 -38.10 -0.33 -4.11 16 7 C 0.10 2.77 5.56 -107.01 -0.59 2.18 16 8 C -0.45 -12.01 9.03 -37.82 -0.34 -12.35 16 9 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 10 C 0.07 1.87 5.12 -17.34 -0.09 1.78 16 11 N -0.79 -20.30 10.98 55.54 0.61 -19.69 16 12 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 13 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 14 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 15 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 16 C -0.15 -3.77 9.04 -39.39 -0.36 -4.12 16 17 C -0.05 -1.15 5.87 -104.70 -0.61 -1.77 16 18 C 0.12 2.28 7.10 36.00 0.26 2.54 16 19 O -0.56 -9.76 12.06 -35.23 -0.42 -10.19 16 20 C -0.22 -5.14 6.34 -38.03 -0.24 -5.38 16 21 S -0.01 -0.14 22.88 -107.50 -2.46 -2.60 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 28 H 0.12 3.31 6.15 -52.48 -0.32 2.99 16 29 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 30 H 0.11 2.83 6.90 -52.48 -0.36 2.47 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.37 4.13 9.12 45.56 0.42 4.55 16 LS Contribution 295.18 15.07 4.45 4.45 Total: -1.00 -29.12 295.18 -9.41 -38.53 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.20 Total: 7.34 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -3.36 Total: -31.33 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.61 Total: -19.69 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.42 Total: -10.19 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.46 Total: -2.60 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.12 -9.41 -38.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.793 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds