Wall clock time and date at job start Mon Mar 30 2020 06:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47357 * 2 1 4 4 C 1.31705 * 124.24313 * 89.72177 * 3 2 1 5 5 C 1.45565 * 114.89002 * 179.80793 * 4 3 2 6 6 C 1.40521 * 129.19638 * 180.17399 * 5 4 3 7 7 C 1.39908 * 119.98991 * 180.31189 * 6 5 4 8 8 C 1.41272 * 120.06207 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00412 * 204.87022 * 8 7 6 10 10 C 1.39860 * 119.99743 * 24.87545 * 8 7 6 11 11 N 1.30893 * 120.00372 * 18.01940 * 10 8 7 12 12 Si 1.86800 * 119.99858 * 198.02332 * 10 8 7 13 13 H 1.48500 * 109.47127 * 59.99843 * 12 10 8 14 14 H 1.48497 * 109.47078 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47075 * 299.99987 * 12 10 8 16 16 C 1.41157 * 119.88076 * 359.97438 * 7 6 5 17 17 C 1.35687 * 120.10314 * 359.97438 * 16 7 6 18 18 C 1.50691 * 119.58573 * 179.97438 * 17 16 7 19 19 O 1.42906 * 109.47476 * 0.03958 * 18 17 16 20 20 C 1.40153 * 111.77745 * 0.46614 * 5 4 3 21 21 S 1.75263 * 124.24111 * 270.02296 * 3 2 1 22 22 H 1.08992 * 109.46981 * 300.00767 * 1 2 3 23 23 H 1.09008 * 109.46481 * 60.00320 * 1 2 3 24 24 H 1.09002 * 109.46945 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46647 * 120.00133 * 2 1 3 26 26 H 1.08994 * 109.47492 * 239.99310 * 2 1 3 27 27 H 1.08001 * 122.55344 * 359.97438 * 4 3 2 28 28 H 1.08008 * 120.00493 * 0.28365 * 6 5 4 29 29 H 0.96996 * 120.00075 * 179.97438 * 11 10 8 30 30 H 1.08005 * 119.95365 * 179.97438 * 16 7 6 31 31 H 1.09004 * 109.47115 * 120.03607 * 18 17 16 32 32 H 1.08997 * 109.47460 * 240.03594 * 18 17 16 33 33 H 0.96698 * 114.00029 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2745 2.1213 1.0887 5 6 2.7586 3.4735 0.8522 6 6 3.1097 4.4665 1.7824 7 6 3.5513 5.7172 1.3371 8 6 3.9041 6.7168 2.2710 9 1 3.8549 7.7587 1.9913 10 6 4.3173 6.3570 3.5578 11 7 4.7161 5.1339 3.7992 12 14 4.2999 7.6220 4.9322 13 1 2.9154 8.1226 5.1267 14 1 4.7798 6.9938 6.1892 15 1 5.1901 8.7551 4.5732 16 6 3.6437 5.9784 -0.0470 17 6 3.3055 5.0189 -0.9447 18 6 3.4080 5.3106 -2.4196 19 8 3.8794 6.6462 -2.6095 20 6 2.8587 3.7580 -0.5165 21 16 2.3607 2.3507 -1.4489 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8898 27 1 2.1277 1.7218 2.0814 28 1 3.0382 4.2645 2.8410 29 1 5.0030 4.8845 4.6915 30 1 3.9840 6.9436 -0.3920 31 1 4.1046 4.6104 -2.8809 32 1 2.4261 5.2029 -2.8804 33 1 3.9695 6.9033 -3.5373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396319780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:38 Heat of formation + Delta-G solvation = -49.985775 kcal Electronic energy + Delta-G solvation = -16822.158367 eV Core-core repulsion = 14130.255786 eV Total energy + Delta-G solvation = -2691.902581 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11516 -37.95724 -37.01571 -35.45763 -33.41687 -32.08219 -29.50297 -27.45390 -26.64749 -24.91332 -23.02526 -21.55981 -21.01044 -18.90894 -18.24865 -17.80950 -16.97598 -16.24673 -15.92397 -15.88809 -15.51971 -14.89075 -14.63973 -14.54800 -14.20188 -13.70060 -13.53745 -13.17630 -12.99142 -12.81165 -12.65338 -12.40447 -12.22239 -12.03234 -11.71933 -11.59705 -11.50771 -11.26390 -11.21432 -10.77842 -9.91955 -9.10617 -8.66246 -8.39195 -6.33046 0.19959 0.78741 0.93785 1.32842 1.36808 1.43415 1.49795 1.71280 2.19348 2.64512 3.39292 3.58931 3.78385 4.09852 4.24677 4.35795 4.45801 4.46524 4.53117 4.65027 4.73304 4.96348 4.98954 5.02017 5.09111 5.24209 5.28110 5.37428 5.45920 5.62276 5.71846 5.89996 6.03075 6.18932 6.60050 6.85526 6.90648 6.99468 8.29986 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.006926 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.479194 B = 4041.721353 C = 5415.419543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.064 4.064 6 C -0.177 4.177 7 C 0.077 3.923 8 C -0.493 4.493 9 H 0.078 0.922 10 C 0.035 3.965 11 N -0.822 5.822 12 Si 0.985 3.015 13 H -0.260 1.260 14 H -0.266 1.266 15 H -0.258 1.258 16 C -0.176 4.176 17 C -0.054 4.054 18 C 0.130 3.870 19 O -0.581 6.581 20 C -0.248 4.248 21 S 0.049 5.951 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.104 0.896 29 H 0.289 0.711 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -6.620 -7.140 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C -0.263 4.263 4 C -0.174 4.174 5 C -0.070 4.070 6 C -0.200 4.200 7 C 0.073 3.927 8 C -0.523 4.523 9 H 0.096 0.904 10 C -0.180 4.180 11 N -0.448 5.448 12 Si 0.805 3.195 13 H -0.185 1.185 14 H -0.190 1.190 15 H -0.182 1.182 16 C -0.197 4.197 17 C -0.059 4.059 18 C 0.053 3.947 19 O -0.389 6.389 20 C -0.362 4.362 21 S 0.309 5.691 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.904 -7.135 -7.841 11.681 hybrid contribution 0.451 1.080 1.762 2.116 sum -4.452 -6.055 -6.078 9.666 Atomic orbital electron populations 1.21755 0.93365 1.02987 1.01903 1.20273 0.96947 0.87681 1.04167 1.24109 1.05694 1.01391 0.95091 1.20935 1.04151 0.92664 0.99650 1.19443 1.00313 0.94436 0.92770 1.21049 1.07087 0.94271 0.97551 1.17808 0.89356 0.93216 0.92301 1.19758 1.41002 0.94463 0.97063 0.90421 1.26787 0.91262 0.98197 1.01781 1.69908 1.29837 1.21087 1.23950 0.85220 0.79897 0.78293 0.76114 1.18473 1.19001 1.18221 1.20712 1.06979 0.99444 0.92550 1.18774 1.00065 0.91677 0.95366 1.20758 0.98464 0.83873 0.91653 1.86508 1.89371 1.30135 1.32878 1.21951 1.19207 0.99015 0.96067 1.82842 1.73161 1.04501 1.08591 0.93309 0.92879 0.89674 0.89164 0.89428 0.84462 0.87762 0.90015 0.87229 0.91778 0.91439 0.75221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.90 71.98 0.71 -2.26 16 2 C -0.05 -1.24 6.36 29.85 0.19 -1.05 16 3 C -0.15 -5.08 5.62 24.99 0.14 -4.94 16 4 C -0.14 -5.90 10.21 23.47 0.24 -5.66 16 5 C -0.06 -3.18 6.03 -20.37 -0.12 -3.30 16 6 C -0.18 -9.92 8.75 23.23 0.20 -9.71 16 7 C 0.08 4.38 5.56 -21.41 -0.12 4.26 16 8 C -0.49 -27.62 9.03 23.41 0.21 -27.41 16 9 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 10 C 0.03 1.81 5.12 85.23 0.44 2.25 16 11 N -0.82 -44.24 10.98 21.81 0.24 -44.00 16 12 Si 0.98 39.02 29.60 68.60 2.03 41.05 16 13 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 14 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 15 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 16 C -0.18 -9.28 9.04 22.40 0.20 -9.08 16 17 C -0.05 -2.54 5.87 -19.92 -0.12 -2.66 16 18 C 0.13 4.60 7.10 71.23 0.51 5.10 16 19 O -0.58 -19.44 12.06 -148.98 -1.80 -21.24 16 20 C -0.25 -11.50 6.34 23.28 0.15 -11.36 16 21 S 0.05 1.76 22.88 -56.49 -1.29 0.46 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.14 5.20 8.06 -2.91 -0.02 5.18 16 28 H 0.10 6.05 6.15 -2.91 -0.02 6.03 16 29 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 30 H 0.11 5.69 6.90 -2.91 -0.02 5.67 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.40 7.99 9.12 -74.06 -0.68 7.32 16 Total: -1.00 -66.55 295.18 2.27 -64.29 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.46 Total: 25.26 kcal Atomic # 6 Polarization: -68.46 SS G_CDS: 2.63 Total: -65.83 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.24 Total: -44.00 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.80 Total: -21.24 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.29 Total: 0.46 kcal Total: -66.55 2.27 -64.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.300 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds