Wall clock time and date at job start Mon Mar 30 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47242 * 2 1 4 4 C 1.37814 * 119.70888 * 265.23614 * 3 2 1 5 5 C 1.38717 * 120.31923 * 180.30078 * 4 3 2 6 6 C 1.37615 * 120.42644 * 359.45896 * 5 4 3 7 7 O 1.35729 * 119.88926 * 180.27449 * 6 5 4 8 8 C 1.42900 * 117.00383 * 0.02562 * 7 6 5 9 9 C 1.42417 * 120.21780 * 0.25743 * 6 5 4 10 10 C 1.39643 * 128.49058 * 179.97438 * 9 6 5 11 11 C 1.37017 * 115.02866 * 180.02562 * 10 9 6 12 12 C 1.39889 * 124.83566 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00190 * 353.25855 * 12 11 10 14 14 C 1.40121 * 119.99915 * 173.26159 * 12 11 10 15 15 N 1.30801 * 119.99858 * 6.56611 * 14 12 11 16 16 Si 1.86799 * 119.99734 * 186.57302 * 14 12 11 17 17 H 1.48504 * 109.47301 * 94.98469 * 16 14 12 18 18 H 1.48501 * 109.46789 * 214.98492 * 16 14 12 19 19 H 1.48502 * 109.47333 * 334.98341 * 16 14 12 20 20 S 1.75454 * 110.32383 * 359.97438 * 11 10 9 21 21 C 1.39526 * 119.71767 * 84.99850 * 3 2 1 22 22 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46730 * 300.00648 * 1 2 3 24 24 H 1.09001 * 109.46934 * 60.00202 * 1 2 3 25 25 H 1.09000 * 109.47452 * 239.99425 * 2 1 3 26 26 H 1.09001 * 109.47066 * 119.99260 * 2 1 3 27 27 H 1.08008 * 119.84306 * 0.03966 * 4 3 2 28 28 H 1.07997 * 119.78654 * 179.73769 * 5 4 3 29 29 H 1.08996 * 109.46824 * 59.99558 * 8 7 6 30 30 H 1.09000 * 109.47068 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.46899 * 299.99579 * 8 7 6 32 32 H 1.07995 * 122.48566 * 359.97438 * 10 9 6 33 33 H 0.97004 * 120.00187 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3538 2.0316 -1.1929 5 6 2.8232 3.3369 -1.2071 6 6 2.9629 4.0401 -0.0324 7 8 3.4179 5.3185 -0.0595 8 6 3.7313 5.8687 -1.3406 9 6 2.6311 3.4310 1.2114 10 6 2.7057 3.9778 2.4942 11 6 2.3149 3.1396 3.5052 12 6 2.3081 3.4748 4.8633 13 1 2.7282 4.4147 5.1897 14 6 1.7564 2.5909 5.8003 15 7 1.3649 1.4007 5.4250 16 14 1.5797 3.1128 7.5852 17 1 0.2128 3.6470 7.8118 18 1 1.8058 1.9404 8.4682 19 1 2.5803 4.1657 7.8945 20 16 1.8243 1.5862 2.8536 21 6 2.1634 2.1081 1.2071 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 2.2436 1.4900 -2.1208 28 1 3.0766 3.8057 -2.1464 29 1 2.8393 5.8620 -1.9669 30 1 4.0824 6.8935 -1.2199 31 1 4.5109 5.2704 -1.8121 32 1 3.0469 4.9861 2.6759 33 1 0.9826 0.7889 6.0735 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396319914.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:12 Heat of formation + Delta-G solvation = -32.991927 kcal Electronic energy + Delta-G solvation = -17041.729355 eV Core-core repulsion = 14350.563683 eV Total energy + Delta-G solvation = -2691.165673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19735 -36.96529 -35.15672 -33.58866 -32.14002 -29.11641 -28.15300 -26.76582 -25.21125 -22.88878 -22.20815 -20.26987 -18.94300 -18.04242 -16.96206 -15.68656 -15.25452 -15.04874 -14.56369 -14.23003 -13.67349 -13.50658 -13.20558 -12.77230 -12.46444 -12.14302 -11.84598 -11.70766 -11.53994 -11.44295 -11.32005 -10.79631 -10.75903 -10.50536 -10.41247 -10.02987 -9.97092 -9.89146 -9.29848 -9.03731 -7.88566 -7.27926 -7.13948 -6.23565 -4.57857 2.09691 2.38905 2.83347 2.88241 2.94289 3.29815 3.59472 3.61941 3.81026 4.17670 4.62100 5.06812 5.44770 5.53510 5.54650 5.60151 5.72049 5.85003 5.92606 5.94685 6.19727 6.30955 6.40240 6.52891 6.72471 6.73901 6.79855 6.92453 7.19274 7.39079 7.50364 7.61372 7.70519 7.78422 7.97119 8.28738 8.40886 8.52788 9.71264 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.007300 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.005660 B = 3834.543547 C = 5089.231423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.048 4.048 4 C -0.159 4.159 5 C -0.203 4.203 6 C 0.088 3.912 7 O -0.317 6.317 8 C 0.033 3.967 9 C 0.005 3.995 10 C -0.345 4.345 11 C 0.046 3.954 12 C -0.387 4.387 13 H 0.098 0.902 14 C 0.054 3.946 15 N -0.782 5.782 16 Si 0.937 3.063 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.257 1.257 20 S 0.152 5.848 21 C -0.238 4.238 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -0.436 -5.170 5.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.053 4.053 4 C -0.180 4.180 5 C -0.224 4.224 6 C 0.042 3.958 7 O -0.231 6.231 8 C -0.063 4.063 9 C -0.003 4.003 10 C -0.370 4.370 11 C -0.073 4.073 12 C -0.422 4.422 13 H 0.116 0.884 14 C -0.167 4.167 15 N -0.408 5.408 16 Si 0.760 3.240 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.180 1.180 20 S 0.413 5.587 21 C -0.353 4.353 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.843 -1.822 -4.241 4.692 hybrid contribution 0.496 1.603 -0.329 1.710 sum -0.347 -0.218 -4.571 4.589 Atomic orbital electron populations 1.21701 0.95445 1.00645 1.02254 1.20432 0.95799 0.93788 1.01581 1.18864 1.00495 0.94758 0.91173 1.20057 1.07084 0.94917 0.95964 1.20482 1.09646 0.96754 0.95519 1.18970 1.00315 0.83263 0.93254 1.85994 1.80620 1.26615 1.29882 1.22841 0.99555 0.98471 0.85431 1.17345 0.99314 0.92383 0.91302 1.19528 1.26193 1.01585 0.89664 1.21443 0.95052 0.94373 0.96403 1.19270 1.29615 1.03653 0.89612 0.88420 1.26271 0.93149 0.93887 1.03370 1.68667 1.28567 1.05789 1.37810 0.85772 0.80051 0.79509 0.78657 1.18915 1.19640 1.18029 1.84721 1.69573 1.14710 0.89716 1.23335 1.12733 0.98087 1.01170 0.93269 0.92092 0.93127 0.92175 0.91522 0.87793 0.87445 0.93607 0.89428 0.93591 0.87360 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.90 37.16 0.37 -1.95 16 2 C -0.08 -1.39 5.86 -27.88 -0.16 -1.56 16 3 C -0.05 -1.03 5.16 -104.30 -0.54 -1.57 16 4 C -0.16 -3.17 9.64 -39.56 -0.38 -3.56 16 5 C -0.20 -4.10 9.00 -39.63 -0.36 -4.45 16 6 C 0.09 2.01 6.78 -38.20 -0.26 1.75 16 7 O -0.32 -6.71 10.35 -18.89 -0.20 -6.90 16 8 C 0.03 0.49 9.80 101.05 0.99 1.48 16 9 C 0.01 0.14 5.86 -106.99 -0.63 -0.49 16 10 C -0.34 -9.21 9.98 -39.50 -0.39 -9.60 16 11 C 0.05 1.24 6.11 -39.41 -0.24 1.00 16 12 C -0.39 -9.81 9.26 -38.26 -0.35 -10.16 16 13 H 0.10 2.36 7.86 -52.49 -0.41 1.95 16 14 C 0.05 1.24 5.49 -17.28 -0.09 1.15 16 15 N -0.78 -18.43 10.62 55.56 0.59 -17.84 16 16 Si 0.94 17.26 29.57 -169.99 -5.03 12.23 16 17 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 20 S 0.15 3.75 19.53 -107.50 -2.10 1.65 16 21 C -0.24 -5.81 6.30 -38.32 -0.24 -6.05 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 26 H 0.07 1.22 7.74 -51.93 -0.40 0.82 16 27 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 28 H 0.11 1.82 6.22 -52.49 -0.33 1.50 16 29 H 0.05 0.63 7.64 -51.93 -0.40 0.23 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.63 7.64 -51.93 -0.40 0.23 16 32 H 0.11 2.86 8.06 -52.49 -0.42 2.44 16 33 H 0.30 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -28.09 292.64 -8.64 -36.73 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.02 Total: 3.74 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: -2.29 Total: -34.01 kcal Atomic # 7 Polarization: -18.43 SS G_CDS: 0.59 Total: -17.84 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.20 Total: -6.90 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.10 Total: 1.65 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.09 -8.64 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319914.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.738 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds