Wall clock time and date at job start Mon Mar 30 2020 06:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47242 * 2 1 4 4 C 1.37814 * 119.70888 * 265.23614 * 3 2 1 5 5 C 1.38717 * 120.31923 * 180.30078 * 4 3 2 6 6 C 1.37615 * 120.42644 * 359.45896 * 5 4 3 7 7 O 1.35729 * 119.88926 * 180.27449 * 6 5 4 8 8 C 1.42900 * 117.00383 * 0.02562 * 7 6 5 9 9 C 1.42417 * 120.21780 * 0.25743 * 6 5 4 10 10 C 1.39643 * 128.49058 * 179.97438 * 9 6 5 11 11 C 1.37017 * 115.02866 * 180.02562 * 10 9 6 12 12 C 1.39889 * 124.83566 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00190 * 353.25855 * 12 11 10 14 14 C 1.40121 * 119.99915 * 173.26159 * 12 11 10 15 15 N 1.30801 * 119.99858 * 6.56611 * 14 12 11 16 16 Si 1.86799 * 119.99734 * 186.57302 * 14 12 11 17 17 H 1.48504 * 109.47301 * 94.98469 * 16 14 12 18 18 H 1.48501 * 109.46789 * 214.98492 * 16 14 12 19 19 H 1.48502 * 109.47333 * 334.98341 * 16 14 12 20 20 S 1.75454 * 110.32383 * 359.97438 * 11 10 9 21 21 C 1.39526 * 119.71767 * 84.99850 * 3 2 1 22 22 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46730 * 300.00648 * 1 2 3 24 24 H 1.09001 * 109.46934 * 60.00202 * 1 2 3 25 25 H 1.09000 * 109.47452 * 239.99425 * 2 1 3 26 26 H 1.09001 * 109.47066 * 119.99260 * 2 1 3 27 27 H 1.08008 * 119.84306 * 0.03966 * 4 3 2 28 28 H 1.07997 * 119.78654 * 179.73769 * 5 4 3 29 29 H 1.08996 * 109.46824 * 59.99558 * 8 7 6 30 30 H 1.09000 * 109.47068 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.46899 * 299.99579 * 8 7 6 32 32 H 1.07995 * 122.48566 * 359.97438 * 10 9 6 33 33 H 0.97004 * 120.00187 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3538 2.0316 -1.1929 5 6 2.8232 3.3369 -1.2071 6 6 2.9629 4.0401 -0.0324 7 8 3.4179 5.3185 -0.0595 8 6 3.7313 5.8687 -1.3406 9 6 2.6311 3.4310 1.2114 10 6 2.7057 3.9778 2.4942 11 6 2.3149 3.1396 3.5052 12 6 2.3081 3.4748 4.8633 13 1 2.7282 4.4147 5.1897 14 6 1.7564 2.5909 5.8003 15 7 1.3649 1.4007 5.4250 16 14 1.5797 3.1128 7.5852 17 1 0.2128 3.6470 7.8118 18 1 1.8058 1.9404 8.4682 19 1 2.5803 4.1657 7.8945 20 16 1.8243 1.5862 2.8536 21 6 2.1634 2.1081 1.2071 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 2.2436 1.4900 -2.1208 28 1 3.0766 3.8057 -2.1464 29 1 2.8393 5.8620 -1.9669 30 1 4.0824 6.8935 -1.2199 31 1 4.5109 5.2704 -1.8121 32 1 3.0469 4.9861 2.6759 33 1 0.9826 0.7889 6.0735 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396319914.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:11 Heat of formation + Delta-G solvation = -47.533465 kcal Electronic energy + Delta-G solvation = -17042.359924 eV Core-core repulsion = 14350.563683 eV Total energy + Delta-G solvation = -2691.796241 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82660 -38.56337 -36.94587 -35.30305 -33.69031 -30.90730 -29.65097 -28.17226 -26.97506 -24.36871 -23.93032 -21.92041 -20.74114 -19.78284 -18.64429 -17.36905 -16.82676 -16.47950 -16.24858 -15.88253 -15.16095 -15.05510 -14.77788 -14.35457 -14.03264 -13.66839 -13.43166 -13.25750 -13.14987 -13.04733 -12.85726 -12.31643 -12.26994 -12.01484 -11.82029 -11.64323 -11.59769 -11.51686 -11.01402 -10.92561 -9.65564 -9.11060 -8.90234 -8.04944 -6.48925 0.34751 0.67603 1.31017 1.34626 1.44611 1.52850 1.85170 1.88432 2.14172 2.69607 2.84598 3.22602 4.06083 4.16320 4.24305 4.33113 4.42732 4.50023 4.59633 4.69429 4.75926 4.87873 4.92173 4.95614 5.07818 5.16985 5.22946 5.42610 5.49052 5.50285 5.70978 5.88099 5.93115 6.09361 6.11741 6.41280 6.57591 6.84969 7.98485 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.007300 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.005660 B = 3834.543547 C = 5089.231423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.064 4.064 4 C -0.146 4.146 5 C -0.196 4.196 6 C 0.072 3.928 7 O -0.346 6.346 8 C 0.023 3.977 9 C -0.034 4.034 10 C -0.379 4.379 11 C 0.016 3.984 12 C -0.423 4.423 13 H 0.095 0.905 14 C 0.019 3.981 15 N -0.802 5.802 16 Si 1.012 2.988 17 H -0.258 1.258 18 H -0.255 1.255 19 H -0.256 1.256 20 S 0.146 5.854 21 C -0.252 4.252 22 H 0.077 0.923 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -1.359 -6.789 6.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.069 4.069 4 C -0.166 4.166 5 C -0.217 4.217 6 C 0.026 3.974 7 O -0.261 6.261 8 C -0.072 4.072 9 C -0.043 4.043 10 C -0.404 4.404 11 C -0.103 4.103 12 C -0.456 4.456 13 H 0.113 0.887 14 C -0.199 4.199 15 N -0.429 5.429 16 Si 0.830 3.170 17 H -0.182 1.182 18 H -0.179 1.179 19 H -0.180 1.180 20 S 0.406 5.594 21 C -0.367 4.367 22 H 0.096 0.904 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.165 0.835 28 H 0.164 0.836 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.193 -2.745 -5.896 6.613 hybrid contribution 0.642 1.905 -0.051 2.011 sum -0.551 -0.840 -5.947 6.031 Atomic orbital electron populations 1.21670 0.94310 1.02246 1.01379 1.20493 0.96706 0.91633 1.02575 1.19363 1.00462 0.96543 0.90517 1.20631 1.04228 0.94791 0.96978 1.20948 1.07954 0.96828 0.95995 1.19145 1.00701 0.84392 0.93191 1.85952 1.80572 1.25967 1.33646 1.23233 1.00766 0.99812 0.83379 1.17680 1.00923 0.93581 0.92073 1.19553 1.28632 1.01179 0.91072 1.21788 0.95849 0.95442 0.97228 1.19554 1.31415 1.04575 0.90068 0.88738 1.27225 0.91786 0.93401 1.07482 1.68692 1.27975 1.06536 1.39682 0.84710 0.80080 0.79505 0.72747 1.18188 1.17910 1.17970 1.84357 1.70239 1.14033 0.90741 1.23608 1.13043 0.98122 1.01903 0.90449 0.94863 0.92076 0.88899 0.92747 0.83505 0.83567 0.92058 0.86829 0.92031 0.89226 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.90 71.98 0.71 -3.48 16 2 C -0.08 -2.55 5.86 29.85 0.17 -2.37 16 3 C -0.06 -2.64 5.16 -19.65 -0.10 -2.75 16 4 C -0.15 -5.30 9.64 22.28 0.21 -5.08 16 5 C -0.20 -7.40 9.00 22.24 0.20 -7.20 16 6 C 0.07 3.29 6.78 23.16 0.16 3.45 16 7 O -0.35 -14.73 10.35 -90.51 -0.94 -15.67 16 8 C 0.02 0.62 9.80 113.37 1.11 1.73 16 9 C -0.03 -1.84 5.86 -21.40 -0.13 -1.96 16 10 C -0.38 -21.80 9.98 22.32 0.22 -21.58 16 11 C 0.02 0.90 6.11 22.38 0.14 1.04 16 12 C -0.42 -22.65 9.26 23.13 0.21 -22.43 16 13 H 0.09 4.89 7.86 -2.91 -0.02 4.87 16 14 C 0.02 0.91 5.49 85.30 0.47 1.38 16 15 N -0.80 -38.59 10.62 21.86 0.23 -38.35 16 16 Si 1.01 35.37 29.57 68.60 2.03 37.39 16 17 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 18 H -0.26 -8.21 7.11 99.48 0.71 -7.51 16 19 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 20 S 0.15 7.53 19.53 -56.49 -1.10 6.43 16 21 C -0.25 -12.57 6.30 23.09 0.15 -12.43 16 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 2.47 8.04 -2.39 -0.02 2.46 16 26 H 0.05 1.93 7.74 -2.39 -0.02 1.92 16 27 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 28 H 0.15 4.30 6.22 -2.91 -0.02 4.28 16 29 H 0.06 1.49 7.64 -2.39 -0.02 1.47 16 30 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.06 1.50 7.64 -2.39 -0.02 1.48 16 32 H 0.09 5.22 8.06 -2.91 -0.02 5.19 16 33 H 0.31 13.13 8.30 -92.71 -0.77 12.36 16 Total: -1.00 -65.13 292.64 4.86 -60.27 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.11 Total: 21.62 kcal Atomic # 6 Polarization: -75.22 SS G_CDS: 3.53 Total: -71.69 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.23 Total: -38.35 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.94 Total: -15.67 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.39 kcal Atomic # 16 Polarization: 7.53 SS G_CDS: -1.10 Total: 6.43 kcal Total: -65.13 4.86 -60.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319914.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.733 kcal (2) G-P(sol) polarization free energy of solvation -65.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds