Wall clock time and date at job start Mon Mar 30 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46906 * 2 1 4 4 C 1.31865 * 124.33192 * 89.97671 * 3 2 1 5 5 C 1.45467 * 114.88249 * 179.97438 * 4 3 2 6 6 C 1.41385 * 129.16686 * 179.97438 * 5 4 3 7 7 C 1.37749 * 120.90405 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.62124 * 179.72738 * 7 6 5 9 9 O 1.42898 * 109.47461 * 89.99623 * 8 7 6 10 10 C 1.37932 * 120.76479 * 359.97438 * 7 6 5 11 11 C 1.40372 * 119.87881 * 359.97438 * 10 7 6 12 12 C 1.40932 * 120.11742 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00372 * 204.98024 * 12 11 10 14 14 C 1.39930 * 119.99484 * 24.97732 * 12 11 10 15 15 N 1.30866 * 120.00378 * 17.87847 * 14 12 11 16 16 Si 1.86809 * 119.99874 * 197.87857 * 14 12 11 17 17 H 1.48496 * 109.47029 * 59.99656 * 16 14 12 18 18 H 1.48497 * 109.47076 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46787 * 300.00113 * 16 14 12 20 20 C 1.39390 * 111.84156 * 0.02562 * 5 4 3 21 21 S 1.75304 * 124.33456 * 269.97513 * 3 2 1 22 22 H 1.09005 * 109.46940 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46847 * 299.99756 * 1 2 3 24 24 H 1.09004 * 109.47506 * 60.00001 * 1 2 3 25 25 H 1.09005 * 109.47234 * 240.00114 * 2 1 3 26 26 H 1.09004 * 109.47506 * 119.99999 * 2 1 3 27 27 H 1.07995 * 122.55957 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.55295 * 359.97438 * 6 5 4 29 29 H 1.08999 * 109.47065 * 209.99944 * 8 7 6 30 30 H 1.09003 * 109.46762 * 329.99013 * 8 7 6 31 31 H 0.96698 * 113.99844 * 180.02562 * 9 8 7 32 32 H 1.07995 * 120.05988 * 179.97438 * 10 7 6 33 33 H 0.96999 * 120.00419 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2797 2.1222 1.0889 5 6 2.7586 3.4749 0.8501 6 6 3.1115 4.4753 1.7848 7 6 3.5492 5.7123 1.3657 8 6 3.9119 6.7594 2.3871 9 8 5.2974 6.6432 2.7171 10 6 3.6545 6.0055 0.0220 11 6 3.3136 5.0359 -0.9341 12 6 3.4198 5.3299 -2.3083 13 1 2.8131 4.7945 -3.0235 14 6 4.3114 6.3155 -2.7459 15 7 5.2810 6.7151 -1.9631 16 14 4.1178 7.0610 -4.4478 17 1 2.7858 7.7085 -4.5559 18 1 5.1807 8.0743 -4.6683 19 1 4.2332 5.9923 -5.4724 20 6 2.8587 3.7567 -0.5113 21 16 2.3624 2.3529 -1.4476 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.1385 1.7226 2.0822 28 1 3.0362 4.2670 2.8419 29 1 3.7182 7.7502 1.9762 30 1 3.3110 6.6147 3.2849 31 1 5.6012 7.2874 3.3711 32 1 3.9985 6.9792 -0.2938 33 1 5.8988 7.3986 -2.2663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396320864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:04 Heat of formation + Delta-G solvation = -33.407173 kcal Electronic energy + Delta-G solvation = -16847.276503 eV Core-core repulsion = 14156.092824 eV Total energy + Delta-G solvation = -2691.183679 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.26465 -36.34715 -35.40145 -33.70987 -31.98452 -30.29929 -27.80880 -25.52884 -25.00374 -23.54646 -20.97450 -20.61956 -18.74238 -17.31289 -16.83849 -16.05217 -15.18187 -14.85039 -14.61355 -13.95756 -13.78194 -13.32522 -13.03000 -12.85555 -12.54464 -12.35403 -11.88946 -11.62618 -11.51700 -11.18230 -11.01248 -10.83778 -10.73471 -10.59523 -10.08486 -9.95493 -9.71622 -9.47384 -9.30263 -9.22403 -8.21086 -7.18876 -6.89380 -6.67673 -4.41611 1.94981 2.56961 2.64822 3.00032 3.02195 3.06130 3.26789 3.50175 3.86162 4.45331 5.05858 5.14773 5.32103 5.53495 5.57191 5.70098 5.85103 5.87188 5.98866 6.03768 6.13040 6.14510 6.36701 6.42156 6.62817 6.80071 6.91268 7.08440 7.23087 7.38344 7.58492 7.76834 7.95367 8.09445 8.17835 8.45121 8.69939 8.76898 10.06842 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.008236 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.281712 B = 3398.864990 C = 5062.142862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.181 4.181 4 C -0.123 4.123 5 C -0.052 4.052 6 C -0.194 4.194 7 C -0.065 4.065 8 C 0.127 3.873 9 O -0.563 6.563 10 C -0.149 4.149 11 C 0.143 3.857 12 C -0.455 4.455 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.778 5.778 16 Si 0.909 3.091 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.201 4.201 21 S 0.043 5.957 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.364 0.636 32 H 0.125 0.875 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 -3.355 3.721 6.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.296 4.296 4 C -0.154 4.154 5 C -0.058 4.058 6 C -0.216 4.216 7 C -0.067 4.067 8 C 0.050 3.950 9 O -0.366 6.366 10 C -0.173 4.173 11 C 0.137 3.863 12 C -0.484 4.484 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.402 5.402 16 Si 0.733 3.267 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.316 4.316 21 S 0.306 5.694 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.140 0.860 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.209 0.791 32 H 0.143 0.857 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.379 -4.061 1.734 6.219 hybrid contribution 0.231 1.184 1.214 1.711 sum -4.148 -2.878 2.948 5.846 Atomic orbital electron populations 1.21766 0.94972 1.01068 1.02485 1.20029 0.95712 0.90773 1.02313 1.23733 1.08528 0.99955 0.97390 1.20765 1.03220 0.93595 0.97865 1.18836 1.01456 0.92867 0.92665 1.19926 1.12243 0.93438 0.96004 1.18984 0.99984 0.93856 0.93827 1.20960 0.81611 0.96928 0.95539 1.86701 1.25882 1.59826 1.64229 1.20992 1.06386 0.99831 0.90056 1.16933 0.88554 0.87089 0.93725 1.19452 1.19413 1.16998 0.92527 0.90157 1.25927 0.93340 0.95179 0.99820 1.69853 1.09764 1.23180 1.37431 0.86336 0.79220 0.79408 0.81730 1.18598 1.20112 1.18777 1.22583 1.16634 0.97982 0.94395 1.83470 1.71417 1.06318 1.08169 0.92757 0.92561 0.92393 0.91313 0.90969 0.85956 0.88987 0.93801 0.94327 0.79087 0.85717 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.05 -0.70 6.37 -27.88 -0.18 -0.88 16 3 C -0.18 -3.42 5.64 -36.21 -0.20 -3.63 16 4 C -0.12 -2.48 10.22 -38.61 -0.39 -2.88 16 5 C -0.05 -1.24 6.04 -105.39 -0.64 -1.87 16 6 C -0.19 -4.54 9.72 -38.56 -0.37 -4.91 16 7 C -0.07 -1.55 5.48 -104.91 -0.58 -2.13 16 8 C 0.13 2.44 7.15 36.01 0.26 2.69 16 9 O -0.56 -10.79 13.64 -35.23 -0.48 -11.27 16 10 C -0.15 -3.92 8.30 -38.89 -0.32 -4.24 16 11 C 0.14 3.87 5.59 -106.56 -0.60 3.27 16 12 C -0.46 -12.08 8.83 -37.93 -0.33 -12.42 16 13 H 0.08 2.08 7.75 -52.49 -0.41 1.67 16 14 C 0.08 1.93 5.12 -17.33 -0.09 1.84 16 15 N -0.78 -20.07 10.98 55.55 0.61 -19.46 16 16 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 17 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.20 -5.11 6.36 -37.64 -0.24 -5.35 16 21 S 0.04 0.93 22.79 -107.50 -2.45 -1.52 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 28 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 29 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.36 4.64 9.12 45.56 0.42 5.06 16 32 H 0.13 3.33 6.17 -52.49 -0.32 3.01 16 33 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 297.34 15.07 4.48 4.48 Total: -1.00 -29.99 297.34 -9.44 -39.43 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.25 Total: 6.81 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: -3.32 Total: -31.96 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.61 Total: -19.46 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.48 Total: -11.27 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.45 Total: -1.52 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.99 -9.44 -39.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.022 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds