Wall clock time and date at job start Mon Mar 30 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46906 * 2 1 4 4 C 1.31865 * 124.33192 * 89.97671 * 3 2 1 5 5 C 1.45467 * 114.88249 * 179.97438 * 4 3 2 6 6 C 1.41385 * 129.16686 * 179.97438 * 5 4 3 7 7 C 1.37749 * 120.90405 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.62124 * 179.72738 * 7 6 5 9 9 O 1.42898 * 109.47461 * 89.99623 * 8 7 6 10 10 C 1.37932 * 120.76479 * 359.97438 * 7 6 5 11 11 C 1.40372 * 119.87881 * 359.97438 * 10 7 6 12 12 C 1.40932 * 120.11742 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00372 * 204.98024 * 12 11 10 14 14 C 1.39930 * 119.99484 * 24.97732 * 12 11 10 15 15 N 1.30866 * 120.00378 * 17.87847 * 14 12 11 16 16 Si 1.86809 * 119.99874 * 197.87857 * 14 12 11 17 17 H 1.48496 * 109.47029 * 59.99656 * 16 14 12 18 18 H 1.48497 * 109.47076 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46787 * 300.00113 * 16 14 12 20 20 C 1.39390 * 111.84156 * 0.02562 * 5 4 3 21 21 S 1.75304 * 124.33456 * 269.97513 * 3 2 1 22 22 H 1.09005 * 109.46940 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46847 * 299.99756 * 1 2 3 24 24 H 1.09004 * 109.47506 * 60.00001 * 1 2 3 25 25 H 1.09005 * 109.47234 * 240.00114 * 2 1 3 26 26 H 1.09004 * 109.47506 * 119.99999 * 2 1 3 27 27 H 1.07995 * 122.55957 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.55295 * 359.97438 * 6 5 4 29 29 H 1.08999 * 109.47065 * 209.99944 * 8 7 6 30 30 H 1.09003 * 109.46762 * 329.99013 * 8 7 6 31 31 H 0.96698 * 113.99844 * 180.02562 * 9 8 7 32 32 H 1.07995 * 120.05988 * 179.97438 * 10 7 6 33 33 H 0.96999 * 120.00419 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2797 2.1222 1.0889 5 6 2.7586 3.4749 0.8501 6 6 3.1115 4.4753 1.7848 7 6 3.5492 5.7123 1.3657 8 6 3.9119 6.7594 2.3871 9 8 5.2974 6.6432 2.7171 10 6 3.6545 6.0055 0.0220 11 6 3.3136 5.0359 -0.9341 12 6 3.4198 5.3299 -2.3083 13 1 2.8131 4.7945 -3.0235 14 6 4.3114 6.3155 -2.7459 15 7 5.2810 6.7151 -1.9631 16 14 4.1178 7.0610 -4.4478 17 1 2.7858 7.7085 -4.5559 18 1 5.1807 8.0743 -4.6683 19 1 4.2332 5.9923 -5.4724 20 6 2.8587 3.7567 -0.5113 21 16 2.3624 2.3529 -1.4476 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.1385 1.7226 2.0822 28 1 3.0362 4.2670 2.8419 29 1 3.7182 7.7502 1.9762 30 1 3.3110 6.6147 3.2849 31 1 5.6012 7.2874 3.3711 32 1 3.9985 6.9792 -0.2938 33 1 5.8988 7.3986 -2.2663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:03 Heat of formation + Delta-G solvation = -51.665664 kcal Electronic energy + Delta-G solvation = -16848.068251 eV Core-core repulsion = 14156.092824 eV Total energy + Delta-G solvation = -2691.975427 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02373 -37.85305 -36.99825 -35.43266 -33.45848 -32.12719 -29.36764 -27.42865 -26.63092 -24.90429 -22.69735 -22.25532 -20.37285 -19.15721 -18.30120 -17.81985 -16.93636 -16.44202 -16.19247 -15.53776 -15.18967 -14.73504 -14.51699 -14.48240 -14.24659 -13.91126 -13.46197 -13.16695 -13.05942 -12.78975 -12.64823 -12.30582 -12.16916 -12.14505 -11.70728 -11.59497 -11.40669 -11.10721 -11.05162 -10.87809 -10.02986 -8.98512 -8.74982 -8.47385 -6.38020 0.25015 0.73689 0.99635 1.32674 1.37357 1.46178 1.51723 1.76597 2.15406 2.63481 3.41472 3.74947 3.93180 4.23326 4.27581 4.32782 4.47049 4.49164 4.56007 4.67875 4.76762 4.87843 4.99561 5.03731 5.09881 5.22479 5.28561 5.38481 5.46388 5.54905 5.80662 5.86189 6.09739 6.21684 6.52800 6.76971 6.86161 7.02433 8.23491 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.008236 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.281712 B = 3398.864990 C = 5062.142862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C -0.157 4.157 4 C -0.140 4.140 5 C -0.065 4.065 6 C -0.201 4.201 7 C -0.076 4.076 8 C 0.131 3.869 9 O -0.586 6.586 10 C -0.180 4.180 11 C 0.112 3.888 12 C -0.489 4.489 13 H 0.073 0.927 14 C 0.038 3.962 15 N -0.812 5.812 16 Si 0.981 3.019 17 H -0.257 1.257 18 H -0.262 1.262 19 H -0.260 1.260 20 C -0.240 4.240 21 S 0.029 5.971 22 H 0.085 0.915 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.157 0.843 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.393 0.607 32 H 0.109 0.891 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 -4.619 4.616 8.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.272 4.272 4 C -0.170 4.170 5 C -0.073 4.073 6 C -0.223 4.223 7 C -0.077 4.077 8 C 0.054 3.946 9 O -0.395 6.395 10 C -0.203 4.203 11 C 0.106 3.894 12 C -0.518 4.518 13 H 0.092 0.908 14 C -0.178 4.178 15 N -0.437 5.437 16 Si 0.801 3.199 17 H -0.182 1.182 18 H -0.186 1.186 19 H -0.184 1.184 20 C -0.355 4.355 21 S 0.292 5.708 22 H 0.103 0.897 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.174 0.826 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.242 0.758 32 H 0.126 0.874 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.102 -5.314 2.667 7.834 hybrid contribution 0.443 1.462 1.046 1.851 sum -4.659 -3.852 3.713 7.094 Atomic orbital electron populations 1.21750 0.93370 1.02951 1.01869 1.20250 0.96933 0.87595 1.04087 1.24309 1.06151 1.01538 0.95207 1.20976 1.04056 0.92128 0.99866 1.19424 1.00817 0.94766 0.92244 1.20335 1.11431 0.93200 0.97334 1.19495 0.98853 0.95336 0.94041 1.20913 0.82217 0.95759 0.95678 1.86606 1.25807 1.61402 1.65643 1.20984 1.08532 0.99366 0.91459 1.17339 0.89334 0.88284 0.94421 1.19635 1.20706 1.18818 0.92639 0.90842 1.26778 0.92340 0.94855 1.03876 1.69909 1.10468 1.23803 1.39478 0.85270 0.79547 0.78670 0.76427 1.18150 1.18586 1.18436 1.22937 1.17643 0.98762 0.96116 1.83373 1.71562 1.05775 1.10092 0.89652 0.92622 0.93638 0.90334 0.88330 0.82577 0.86329 0.93041 0.91015 0.75817 0.87354 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.89 71.98 0.71 -2.37 16 2 C -0.05 -1.25 6.37 29.85 0.19 -1.06 16 3 C -0.16 -5.64 5.64 24.87 0.14 -5.50 16 4 C -0.14 -5.40 10.22 23.32 0.24 -5.16 16 5 C -0.07 -3.13 6.04 -20.36 -0.12 -3.25 16 6 C -0.20 -9.33 9.72 22.93 0.22 -9.11 16 7 C -0.08 -3.65 5.48 -20.05 -0.11 -3.76 16 8 C 0.13 4.92 7.15 71.24 0.51 5.43 16 9 O -0.59 -21.82 13.64 -148.98 -2.03 -23.86 16 10 C -0.18 -9.89 8.30 22.72 0.19 -9.70 16 11 C 0.11 6.35 5.59 -21.12 -0.12 6.23 16 12 C -0.49 -27.31 8.83 23.34 0.21 -27.11 16 13 H 0.07 4.02 7.75 -2.91 -0.02 4.00 16 14 C 0.04 1.97 5.12 85.25 0.44 2.41 16 15 N -0.81 -43.50 10.98 21.83 0.24 -43.26 16 16 Si 0.98 38.84 29.60 68.60 2.03 40.87 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 18 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 C -0.24 -12.58 6.36 23.53 0.15 -12.43 16 21 S 0.03 1.28 22.79 -56.49 -1.29 0.00 16 22 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.16 4.90 8.06 -2.91 -0.02 4.88 16 28 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 29 H 0.05 1.82 8.07 -2.39 -0.02 1.80 16 30 H 0.07 2.19 8.08 -2.39 -0.02 2.17 16 31 H 0.39 9.27 9.12 -74.06 -0.68 8.59 16 32 H 0.11 6.13 6.17 -2.91 -0.02 6.11 16 33 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 Total: -1.00 -68.11 297.34 2.05 -66.07 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.45 Total: 25.56 kcal Atomic # 6 Polarization: -68.02 SS G_CDS: 2.64 Total: -65.38 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.24 Total: -43.26 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -2.03 Total: -23.86 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.29 Total: 0.00 kcal Total: -68.11 2.05 -66.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.400 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds