Wall clock time and date at job start Mon Mar 30 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47098 * 2 1 4 4 C 1.37591 * 119.76824 * 264.97685 * 3 2 1 5 5 C 1.39049 * 120.14195 * 179.97438 * 4 3 2 6 6 O 1.35969 * 119.93479 * 180.02562 * 5 4 3 7 7 C 1.42895 * 117.00252 * 180.02562 * 6 5 4 8 8 C 1.37943 * 120.13539 * 0.05292 * 5 4 3 9 9 C 1.40547 * 120.27105 * 359.96769 * 8 5 4 10 10 C 1.46667 * 129.47491 * 180.02562 * 9 8 5 11 11 C 1.40795 * 123.29909 * 359.97228 * 10 9 8 12 12 H 1.08001 * 120.00234 * 339.17219 * 11 10 9 13 13 C 1.39720 * 119.99557 * 159.18058 * 11 10 9 14 14 N 1.31073 * 120.00193 * 344.90718 * 13 11 10 15 15 Si 1.86801 * 119.99791 * 164.91596 * 13 11 10 16 16 H 1.48501 * 109.47152 * 59.99789 * 15 13 11 17 17 H 1.48500 * 109.46965 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47079 * 299.99434 * 15 13 11 19 19 C 1.36442 * 113.39616 * 179.97438 * 10 9 8 20 20 S 1.69979 * 111.95898 * 0.02562 * 19 10 9 21 21 C 1.39353 * 119.29365 * 359.97438 * 9 8 5 22 22 H 1.09003 * 109.47110 * 60.00442 * 1 2 3 23 23 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47652 * 300.00410 * 1 2 3 25 25 H 1.08997 * 109.47289 * 239.99834 * 2 1 3 26 26 H 1.08998 * 109.46731 * 119.99284 * 2 1 3 27 27 H 1.08001 * 119.93336 * 0.04084 * 4 3 2 28 28 H 1.09006 * 109.47064 * 299.99466 * 7 6 5 29 29 H 1.09003 * 109.47515 * 59.99689 * 7 6 5 30 30 H 1.09002 * 109.46996 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.86331 * 180.23460 * 8 5 4 32 32 H 0.96994 * 120.00432 * 179.97438 * 14 13 11 33 33 H 1.07997 * 124.01663 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3586 2.0300 -1.1898 5 6 2.8223 3.3409 -1.1988 6 8 3.1431 3.9389 -2.3770 7 6 3.6137 5.2867 -2.3135 8 6 2.9582 4.0356 -0.0149 9 6 2.6286 3.4244 1.2070 10 6 2.6936 3.9667 2.5682 11 6 3.1287 5.2736 2.8597 12 1 3.7391 5.8107 2.1488 13 6 2.7710 5.8755 4.0688 14 7 1.8064 5.3652 4.7949 15 14 3.6672 7.4078 4.6504 16 1 3.4996 8.4900 3.6473 17 1 3.1026 7.8477 5.9515 18 1 5.1116 7.1042 4.8144 19 6 2.2910 3.0804 3.5243 20 16 1.8268 1.5891 2.8535 21 6 2.1633 2.1108 1.2088 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5137 0.8900 27 1 2.2533 1.4893 -2.1187 28 1 2.8475 5.9182 -1.8636 29 1 4.5194 5.3272 -1.7084 30 1 3.8334 5.6426 -3.3201 31 1 3.3152 5.0549 -0.0274 32 1 1.5583 5.7828 5.6344 33 1 2.2706 3.3000 4.5815 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396321031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:14 Heat of formation + Delta-G solvation = -20.246925 kcal Electronic energy + Delta-G solvation = -17109.078488 eV Core-core repulsion = 14418.465480 eV Total energy + Delta-G solvation = -2690.613008 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56479 -37.44818 -35.28234 -33.17738 -31.68025 -28.63288 -28.55610 -26.87736 -25.68220 -23.26279 -22.34497 -20.43268 -19.46600 -17.09787 -16.63136 -16.27555 -15.53801 -15.29746 -15.04042 -14.20809 -13.84345 -13.62916 -13.20012 -12.86707 -12.68982 -12.05107 -11.99089 -11.80911 -11.48767 -11.26053 -11.14355 -11.04032 -10.90227 -10.67808 -10.59870 -10.36731 -9.87884 -9.52910 -9.31032 -9.01927 -8.32538 -7.20388 -6.72392 -6.54829 -4.26440 1.81194 2.05327 2.92896 2.98151 3.07718 3.10549 3.71523 3.73266 3.86613 3.99768 4.44047 5.21425 5.29771 5.35393 5.39701 5.46920 5.57812 5.68813 5.70930 5.80705 5.94312 6.01317 6.15391 6.17704 6.42777 6.52773 6.78626 6.82855 6.99098 7.12689 7.17910 7.29497 7.68950 7.95694 7.98456 8.48664 8.79621 8.89914 10.29198 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.007975 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.465953 B = 3510.287612 C = 4928.777239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.026 4.026 4 C -0.150 4.150 5 C 0.102 3.898 6 O -0.325 6.325 7 C 0.029 3.971 8 C -0.170 4.170 9 C -0.022 4.022 10 C 0.074 3.926 11 C -0.437 4.437 12 H 0.072 0.928 13 C 0.070 3.930 14 N -0.798 5.798 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.347 4.347 20 S 0.034 5.966 21 C -0.165 4.165 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.277 0.723 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -3.697 -7.969 8.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.031 4.031 4 C -0.171 4.171 5 C 0.055 3.945 6 O -0.239 6.239 7 C -0.066 4.066 8 C -0.190 4.190 9 C -0.033 4.033 10 C 0.065 3.935 11 C -0.470 4.470 12 H 0.090 0.910 13 C -0.146 4.146 14 N -0.425 5.425 15 Si 0.734 3.266 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.190 1.190 19 C -0.483 4.483 20 S 0.296 5.704 21 C -0.280 4.280 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.140 0.860 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.108 -4.999 -7.184 8.753 hybrid contribution 0.951 2.572 0.006 2.742 sum 0.843 -2.427 -7.178 7.624 Atomic orbital electron populations 1.21716 0.94832 1.01162 1.02582 1.20489 0.96246 0.92678 1.02378 1.18926 0.98639 0.95256 0.90291 1.19811 1.06997 0.92988 0.97280 1.18555 0.99049 0.92780 0.84151 1.85979 1.81001 1.28101 1.28854 1.22945 0.99107 0.81661 1.02893 1.20845 1.07139 1.00407 0.90645 1.19507 0.97077 0.92370 0.94320 1.17300 0.95801 0.94009 0.86410 1.18857 1.28288 0.97965 1.01892 0.90964 1.25750 0.93714 0.98791 0.96331 1.69862 1.21864 1.38713 1.12084 0.86349 0.80602 0.81233 0.78391 1.19240 1.20395 1.19008 1.24323 1.25528 0.95239 1.03210 1.81768 1.73695 1.19565 0.95383 1.22422 1.09655 0.98382 0.97551 0.92765 0.92773 0.91972 0.91351 0.90986 0.85967 0.92780 0.92856 0.89007 0.85868 0.91173 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.89 37.16 0.37 -1.66 16 2 C -0.08 -1.22 5.87 -27.89 -0.16 -1.39 16 3 C -0.03 -0.49 5.16 -104.27 -0.54 -1.03 16 4 C -0.15 -2.75 9.58 -39.52 -0.38 -3.13 16 5 C 0.10 1.98 6.67 -39.39 -0.26 1.71 16 6 O -0.32 -5.58 10.50 -19.64 -0.21 -5.78 16 7 C 0.03 0.40 9.81 101.05 0.99 1.39 16 8 C -0.17 -3.66 8.86 -38.82 -0.34 -4.01 16 9 C -0.02 -0.55 6.02 -105.21 -0.63 -1.18 16 10 C 0.07 1.98 5.69 -106.18 -0.60 1.38 16 11 C -0.44 -11.70 9.06 -38.06 -0.34 -12.04 16 12 H 0.07 1.84 7.67 -52.49 -0.40 1.43 16 13 C 0.07 1.80 5.31 -17.32 -0.09 1.70 16 14 N -0.80 -21.15 10.90 55.54 0.61 -20.54 16 15 Si 0.91 19.05 29.59 -169.99 -5.03 14.03 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 C -0.35 -9.17 9.51 30.08 0.29 -8.89 16 20 S 0.03 0.75 22.34 -107.50 -2.40 -1.65 16 21 C -0.17 -3.70 6.27 -38.58 -0.24 -3.94 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.88 8.04 -51.93 -0.42 0.47 16 26 H 0.07 1.10 7.75 -51.93 -0.40 0.70 16 27 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.05 0.73 7.65 -51.93 -0.40 0.33 16 29 H 0.05 0.70 7.65 -51.93 -0.40 0.31 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.12 2.51 6.03 -52.48 -0.32 2.19 16 32 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 33 H 0.16 4.43 6.31 -52.49 -0.33 4.10 16 LS Contribution 292.37 15.07 4.41 4.41 Total: -1.00 -28.66 292.37 -8.50 -37.16 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.91 Total: 3.47 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -1.96 Total: -31.09 kcal Atomic # 7 Polarization: -21.15 SS G_CDS: 0.61 Total: -20.54 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.21 Total: -5.78 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.40 Total: -1.65 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.66 -8.50 -37.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.908 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds