Wall clock time and date at job start Mon Mar 30 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47098 * 2 1 4 4 C 1.37591 * 119.76824 * 264.97685 * 3 2 1 5 5 C 1.39049 * 120.14195 * 179.97438 * 4 3 2 6 6 O 1.35969 * 119.93479 * 180.02562 * 5 4 3 7 7 C 1.42895 * 117.00252 * 180.02562 * 6 5 4 8 8 C 1.37943 * 120.13539 * 0.05292 * 5 4 3 9 9 C 1.40547 * 120.27105 * 359.96769 * 8 5 4 10 10 C 1.46667 * 129.47491 * 180.02562 * 9 8 5 11 11 C 1.40795 * 123.29909 * 359.97228 * 10 9 8 12 12 H 1.08001 * 120.00234 * 339.17219 * 11 10 9 13 13 C 1.39720 * 119.99557 * 159.18058 * 11 10 9 14 14 N 1.31073 * 120.00193 * 344.90718 * 13 11 10 15 15 Si 1.86801 * 119.99791 * 164.91596 * 13 11 10 16 16 H 1.48501 * 109.47152 * 59.99789 * 15 13 11 17 17 H 1.48500 * 109.46965 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47079 * 299.99434 * 15 13 11 19 19 C 1.36442 * 113.39616 * 179.97438 * 10 9 8 20 20 S 1.69979 * 111.95898 * 0.02562 * 19 10 9 21 21 C 1.39353 * 119.29365 * 359.97438 * 9 8 5 22 22 H 1.09003 * 109.47110 * 60.00442 * 1 2 3 23 23 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47652 * 300.00410 * 1 2 3 25 25 H 1.08997 * 109.47289 * 239.99834 * 2 1 3 26 26 H 1.08998 * 109.46731 * 119.99284 * 2 1 3 27 27 H 1.08001 * 119.93336 * 0.04084 * 4 3 2 28 28 H 1.09006 * 109.47064 * 299.99466 * 7 6 5 29 29 H 1.09003 * 109.47515 * 59.99689 * 7 6 5 30 30 H 1.09002 * 109.46996 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.86331 * 180.23460 * 8 5 4 32 32 H 0.96994 * 120.00432 * 179.97438 * 14 13 11 33 33 H 1.07997 * 124.01663 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3586 2.0300 -1.1898 5 6 2.8223 3.3409 -1.1988 6 8 3.1431 3.9389 -2.3770 7 6 3.6137 5.2867 -2.3135 8 6 2.9582 4.0356 -0.0149 9 6 2.6286 3.4244 1.2070 10 6 2.6936 3.9667 2.5682 11 6 3.1287 5.2736 2.8597 12 1 3.7391 5.8107 2.1488 13 6 2.7710 5.8755 4.0688 14 7 1.8064 5.3652 4.7949 15 14 3.6672 7.4078 4.6504 16 1 3.4996 8.4900 3.6473 17 1 3.1026 7.8477 5.9515 18 1 5.1116 7.1042 4.8144 19 6 2.2910 3.0804 3.5243 20 16 1.8268 1.5891 2.8535 21 6 2.1633 2.1108 1.2088 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5137 0.8900 27 1 2.2533 1.4893 -2.1187 28 1 2.8475 5.9182 -1.8636 29 1 4.5194 5.3272 -1.7084 30 1 3.8334 5.6426 -3.3201 31 1 3.3152 5.0549 -0.0274 32 1 1.5583 5.7828 5.6344 33 1 2.2706 3.3000 4.5815 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396321031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:13 Heat of formation + Delta-G solvation = -35.346853 kcal Electronic energy + Delta-G solvation = -17109.733270 eV Core-core repulsion = 14418.465480 eV Total energy + Delta-G solvation = -2691.267790 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.07130 -38.94350 -36.99531 -34.81536 -33.28407 -30.20303 -30.10726 -28.34101 -27.41894 -24.56530 -24.06064 -21.94547 -21.21005 -18.64457 -18.46330 -17.87357 -17.17838 -16.71645 -16.59598 -15.75745 -15.15985 -15.00776 -14.88882 -14.35693 -14.13224 -13.76453 -13.40041 -13.34230 -12.99118 -12.84924 -12.66948 -12.58922 -12.34990 -12.20813 -12.14489 -11.82071 -11.49810 -11.26200 -11.12033 -10.77550 -9.98074 -8.94771 -8.64120 -8.32920 -6.26174 0.14535 0.44275 1.21964 1.28842 1.35152 1.46586 1.89981 2.00067 2.20628 2.41817 2.73265 3.35502 3.85096 3.95711 4.19556 4.27358 4.38706 4.39066 4.48966 4.55221 4.66490 4.71729 4.86853 5.04576 5.07546 5.11814 5.18006 5.29311 5.38454 5.43477 5.53412 5.68443 5.81271 5.95320 6.47887 6.52849 6.81730 6.92538 8.38110 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.007975 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.465953 B = 3510.287612 C = 4928.777239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.022 4.022 4 C -0.143 4.143 5 C 0.112 3.888 6 O -0.324 6.324 7 C 0.021 3.979 8 C -0.188 4.188 9 C -0.061 4.061 10 C 0.050 3.950 11 C -0.471 4.471 12 H 0.074 0.926 13 C 0.026 3.974 14 N -0.831 5.831 15 Si 0.984 3.016 16 H -0.257 1.257 17 H -0.269 1.269 18 H -0.262 1.262 19 C -0.385 4.385 20 S 0.064 5.936 21 C -0.182 4.182 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.036 0.964 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.160 0.840 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.284 0.716 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -4.125 -10.345 11.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.028 4.028 4 C -0.164 4.164 5 C 0.065 3.935 6 O -0.238 6.238 7 C -0.074 4.074 8 C -0.209 4.209 9 C -0.070 4.070 10 C 0.041 3.959 11 C -0.504 4.504 12 H 0.092 0.908 13 C -0.187 4.187 14 N -0.458 5.458 15 Si 0.805 3.195 16 H -0.181 1.181 17 H -0.194 1.194 18 H -0.186 1.186 19 C -0.520 4.520 20 S 0.326 5.674 21 C -0.297 4.297 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.056 0.944 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.178 0.822 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.094 0.906 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.156 -5.435 -9.579 11.014 hybrid contribution 0.863 2.683 0.578 2.877 sum 1.019 -2.752 -9.001 9.467 Atomic orbital electron populations 1.21707 0.93794 1.02844 1.01681 1.20613 0.97002 0.90170 1.03925 1.19419 0.97245 0.96994 0.89105 1.20286 1.05057 0.92595 0.98420 1.18720 0.97537 0.93186 0.84096 1.85994 1.80625 1.29774 1.27392 1.23263 0.98832 0.79857 1.05438 1.20908 1.08335 1.00887 0.90753 1.19627 0.99465 0.93755 0.94185 1.17755 0.95614 0.94446 0.88127 1.19204 1.29379 0.98651 1.03144 0.90808 1.26708 0.94012 1.02147 0.95831 1.69962 1.23002 1.40314 1.12546 0.85216 0.79056 0.77010 0.78208 1.18141 1.19374 1.18629 1.24255 1.27439 0.97948 1.02377 1.81271 1.73800 1.16849 0.95460 1.22706 1.10273 0.98204 0.98507 0.92116 0.89842 0.94438 0.87952 0.91293 0.82204 0.93108 0.92865 0.85053 0.85808 0.90613 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.89 71.98 0.71 -2.86 16 2 C -0.08 -2.17 5.87 29.85 0.18 -2.00 16 3 C -0.02 -0.80 5.16 -19.64 -0.10 -0.90 16 4 C -0.14 -4.81 9.58 22.31 0.21 -4.59 16 5 C 0.11 4.16 6.67 22.39 0.15 4.31 16 6 O -0.32 -10.22 10.50 -93.20 -0.98 -11.19 16 7 C 0.02 0.51 9.81 113.37 1.11 1.62 16 8 C -0.19 -8.18 8.86 22.76 0.20 -7.98 16 9 C -0.06 -3.04 6.02 -20.25 -0.12 -3.16 16 10 C 0.05 2.82 5.69 -20.87 -0.12 2.70 16 11 C -0.47 -26.37 9.06 23.25 0.21 -26.16 16 12 H 0.07 3.92 7.67 -2.91 -0.02 3.90 16 13 C 0.03 1.38 5.31 85.16 0.45 1.83 16 14 N -0.83 -45.94 10.90 21.80 0.24 -45.70 16 15 Si 0.98 39.79 29.59 68.60 2.03 41.82 16 16 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 C -0.38 -21.51 9.51 67.40 0.64 -20.87 16 20 S 0.06 2.97 22.34 -56.49 -1.26 1.70 16 21 C -0.18 -8.21 6.27 22.92 0.14 -8.07 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 2.13 8.04 -2.39 -0.02 2.12 16 26 H 0.07 1.94 7.75 -2.39 -0.02 1.92 16 27 H 0.16 4.18 8.06 -2.91 -0.02 4.15 16 28 H 0.05 1.30 7.65 -2.38 -0.02 1.28 16 29 H 0.05 1.33 7.65 -2.39 -0.02 1.31 16 30 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.12 5.17 6.03 -2.91 -0.02 5.15 16 32 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 33 H 0.13 7.99 6.31 -2.91 -0.02 7.97 16 Total: -1.00 -65.22 292.37 4.81 -60.41 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.12 Total: 19.10 kcal Atomic # 6 Polarization: -69.80 SS G_CDS: 3.67 Total: -66.13 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.24 Total: -45.70 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.98 Total: -11.19 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.26 Total: 1.70 kcal Total: -65.22 4.81 -60.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.059 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds