Wall clock time and date at job start Mon Mar 30 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47139 * 2 1 4 4 C 1.31863 * 124.32759 * 89.72413 * 3 2 1 5 5 C 1.45461 * 114.88768 * 179.86833 * 4 3 2 6 6 C 1.39430 * 111.83434 * 0.40580 * 5 4 3 7 7 S 1.75300 * 124.33387 * 270.02405 * 3 2 1 8 8 C 1.42153 * 119.69054 * 179.81103 * 6 5 4 9 9 C 1.40931 * 120.11621 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99844 * 24.94427 * 9 8 6 11 11 C 1.39921 * 120.00300 * 204.94828 * 9 8 6 12 12 N 1.30870 * 120.00218 * 17.88789 * 11 9 8 13 13 Si 1.86800 * 120.00018 * 197.89733 * 11 9 8 14 14 H 1.48502 * 109.47573 * 59.99522 * 13 11 9 15 15 H 1.48505 * 109.47052 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46761 * 299.99242 * 13 11 9 17 17 C 1.40412 * 119.77106 * 359.97438 * 8 6 5 18 18 C 1.37882 * 119.88364 * 359.97438 * 17 8 6 19 19 C 1.37800 * 120.76308 * 359.97438 * 18 17 8 20 20 C 1.50699 * 119.54632 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.47413 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47204 * 59.99811 * 1 2 3 23 23 H 1.09006 * 109.47226 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47316 * 299.99814 * 1 2 3 25 25 H 1.09002 * 109.47204 * 120.00189 * 2 1 3 26 26 H 1.09005 * 109.47546 * 239.99994 * 2 1 3 27 27 H 1.07999 * 122.55968 * 0.02562 * 4 3 2 28 28 H 0.96999 * 120.00052 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.05779 * 179.97438 * 17 8 6 30 30 H 1.07992 * 119.61904 * 180.02562 * 18 17 8 31 31 H 1.08999 * 109.46802 * 120.00228 * 20 19 18 32 32 H 1.08996 * 109.47056 * 240.00289 * 20 19 18 33 33 H 0.96693 * 114.00260 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2752 2.1237 1.0889 5 6 2.7575 3.4751 0.8504 6 6 2.8570 3.7574 -0.5114 7 16 2.3613 2.3532 -1.4476 8 6 3.3091 5.0371 -0.9340 9 6 3.4126 5.3322 -2.3082 10 1 2.8046 4.7972 -3.0227 11 6 4.3030 6.3183 -2.7469 12 7 5.2742 6.7175 -1.9658 13 14 4.1054 7.0654 -4.4476 14 1 2.7731 7.7129 -4.5522 15 1 5.1671 8.0799 -4.6690 16 1 4.2189 5.9976 -5.4735 17 6 3.6513 6.0065 0.0224 18 6 3.5468 5.7133 1.3656 19 6 3.1085 4.4759 1.7849 20 6 3.0041 4.1850 3.2598 21 8 3.4102 5.3365 4.0024 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.1298 1.7254 2.0822 28 1 5.8913 7.4013 -2.2698 29 1 3.9957 6.9801 -0.2935 30 1 3.8106 6.4622 2.0975 31 1 1.9722 3.9377 3.5092 32 1 3.6502 3.3439 3.5109 33 1 3.3680 5.2210 4.9615 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396321814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:06 Heat of formation + Delta-G solvation = -34.065205 kcal Electronic energy + Delta-G solvation = -16911.028264 eV Core-core repulsion = 14219.816051 eV Total energy + Delta-G solvation = -2691.212213 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.34377 -36.21387 -35.55805 -33.70854 -31.74774 -30.43325 -27.74032 -26.67843 -23.86944 -23.20874 -21.71495 -20.08558 -19.11808 -17.41112 -16.85023 -15.75654 -15.07402 -14.74822 -14.41430 -14.30307 -13.89445 -13.40150 -13.22073 -12.91537 -12.65494 -12.06564 -12.02530 -11.67706 -11.36299 -11.18507 -11.13636 -10.88850 -10.74471 -10.52207 -10.07455 -9.95584 -9.76898 -9.63379 -9.34569 -9.09870 -8.11930 -7.18062 -6.91422 -6.65447 -4.41314 1.90278 2.61815 2.69781 3.01650 3.03727 3.08854 3.24732 3.47388 3.85444 4.51457 4.85653 5.09162 5.29650 5.45346 5.52353 5.74346 5.81931 5.96494 5.99623 6.10484 6.13039 6.14058 6.33883 6.46297 6.61020 6.83117 6.91683 7.10928 7.24158 7.40721 7.60240 7.83360 7.88166 8.08914 8.23683 8.50758 8.69949 8.78900 10.05103 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.008106 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.407042 B = 3453.210061 C = 5074.615638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.179 4.179 4 C -0.127 4.127 5 C -0.039 4.039 6 C -0.206 4.206 7 S 0.046 5.954 8 C 0.147 3.853 9 C -0.453 4.453 10 H 0.080 0.920 11 C 0.078 3.922 12 N -0.780 5.780 13 Si 0.910 3.090 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.263 1.263 17 C -0.177 4.177 18 C -0.058 4.058 19 C -0.200 4.200 20 C 0.145 3.855 21 O -0.569 6.569 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.121 0.879 28 H 0.285 0.715 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -6.566 4.287 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.294 4.294 4 C -0.159 4.159 5 C -0.046 4.046 6 C -0.320 4.320 7 S 0.309 5.691 8 C 0.142 3.858 9 C -0.482 4.482 10 H 0.098 0.902 11 C -0.142 4.142 12 N -0.404 5.404 13 Si 0.734 3.266 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.188 1.188 17 C -0.200 4.200 18 C -0.077 4.077 19 C -0.204 4.204 20 C 0.067 3.933 21 O -0.372 6.372 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.139 0.861 28 H 0.096 0.904 29 H 0.142 0.858 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.369 -6.538 2.118 8.144 hybrid contribution 0.123 0.435 1.342 1.416 sum -4.245 -6.103 3.461 8.201 Atomic orbital electron populations 1.21766 0.94952 1.01084 1.02502 1.20031 0.95725 0.90780 1.02312 1.23735 1.08317 0.99908 0.97451 1.20728 1.03773 0.93661 0.97769 1.18514 1.01403 0.92335 0.92315 1.22477 1.17323 0.98101 0.94149 1.83475 1.71352 1.06159 1.08083 1.17000 0.87995 0.87087 0.93764 1.19489 1.19241 1.16811 0.92662 0.90192 1.25925 0.93322 0.95097 0.99864 1.69841 1.09819 1.23203 1.37490 0.86322 0.79288 0.79390 0.81608 1.18572 1.20089 1.18775 1.21144 1.08191 0.99686 0.90972 1.20343 0.96763 0.95055 0.95577 1.18663 1.15433 0.95549 0.90754 1.20554 0.96170 0.86158 0.90379 1.86532 1.90439 1.39358 1.20901 0.92376 0.92743 0.92569 0.90993 0.91290 0.86135 0.90431 0.85834 0.87699 0.94736 0.94726 0.78817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 37.16 0.37 -1.43 16 2 C -0.05 -0.69 6.37 -27.88 -0.18 -0.87 16 3 C -0.18 -3.31 5.64 -36.21 -0.20 -3.51 16 4 C -0.13 -2.50 9.79 -38.61 -0.38 -2.88 16 5 C -0.04 -0.91 5.97 -105.39 -0.63 -1.54 16 6 C -0.21 -5.18 6.36 -37.64 -0.24 -5.42 16 7 S 0.05 0.98 22.79 -107.50 -2.45 -1.47 16 8 C 0.15 3.98 5.59 -106.56 -0.60 3.38 16 9 C -0.45 -12.01 8.82 -37.93 -0.33 -12.34 16 10 H 0.08 2.06 7.75 -52.48 -0.41 1.66 16 11 C 0.08 1.93 5.12 -17.33 -0.09 1.85 16 12 N -0.78 -19.93 10.98 55.55 0.61 -19.32 16 13 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 14 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 15 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 17 C -0.18 -4.68 8.68 -38.89 -0.34 -5.02 16 18 C -0.06 -1.43 9.31 -39.87 -0.37 -1.80 16 19 C -0.20 -4.61 5.96 -103.60 -0.62 -5.23 16 20 C 0.14 2.66 7.01 36.01 0.25 2.91 16 21 O -0.57 -9.80 12.07 -35.23 -0.43 -10.22 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.12 2.03 8.02 -52.49 -0.42 1.61 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 29 H 0.12 3.32 6.16 -52.49 -0.32 3.00 16 30 H 0.10 2.46 6.92 -52.49 -0.36 2.09 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.37 4.09 9.12 45.56 0.42 4.51 16 LS Contribution 294.53 15.07 4.44 4.44 Total: -1.00 -29.27 294.53 -9.40 -38.67 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.19 Total: 6.33 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -3.35 Total: -31.91 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.43 Total: -10.22 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.45 Total: -1.47 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.27 -9.40 -38.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.609 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds