Wall clock time and date at job start Mon Mar 30 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47139 * 2 1 4 4 C 1.31863 * 124.32759 * 89.72413 * 3 2 1 5 5 C 1.45461 * 114.88768 * 179.86833 * 4 3 2 6 6 C 1.39430 * 111.83434 * 0.40580 * 5 4 3 7 7 S 1.75300 * 124.33387 * 270.02405 * 3 2 1 8 8 C 1.42153 * 119.69054 * 179.81103 * 6 5 4 9 9 C 1.40931 * 120.11621 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99844 * 24.94427 * 9 8 6 11 11 C 1.39921 * 120.00300 * 204.94828 * 9 8 6 12 12 N 1.30870 * 120.00218 * 17.88789 * 11 9 8 13 13 Si 1.86800 * 120.00018 * 197.89733 * 11 9 8 14 14 H 1.48502 * 109.47573 * 59.99522 * 13 11 9 15 15 H 1.48505 * 109.47052 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46761 * 299.99242 * 13 11 9 17 17 C 1.40412 * 119.77106 * 359.97438 * 8 6 5 18 18 C 1.37882 * 119.88364 * 359.97438 * 17 8 6 19 19 C 1.37800 * 120.76308 * 359.97438 * 18 17 8 20 20 C 1.50699 * 119.54632 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.47413 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47204 * 59.99811 * 1 2 3 23 23 H 1.09006 * 109.47226 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47316 * 299.99814 * 1 2 3 25 25 H 1.09002 * 109.47204 * 120.00189 * 2 1 3 26 26 H 1.09005 * 109.47546 * 239.99994 * 2 1 3 27 27 H 1.07999 * 122.55968 * 0.02562 * 4 3 2 28 28 H 0.96999 * 120.00052 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.05779 * 179.97438 * 17 8 6 30 30 H 1.07992 * 119.61904 * 180.02562 * 18 17 8 31 31 H 1.08999 * 109.46802 * 120.00228 * 20 19 18 32 32 H 1.08996 * 109.47056 * 240.00289 * 20 19 18 33 33 H 0.96693 * 114.00260 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2752 2.1237 1.0889 5 6 2.7575 3.4751 0.8504 6 6 2.8570 3.7574 -0.5114 7 16 2.3613 2.3532 -1.4476 8 6 3.3091 5.0371 -0.9340 9 6 3.4126 5.3322 -2.3082 10 1 2.8046 4.7972 -3.0227 11 6 4.3030 6.3183 -2.7469 12 7 5.2742 6.7175 -1.9658 13 14 4.1054 7.0654 -4.4476 14 1 2.7731 7.7129 -4.5522 15 1 5.1671 8.0799 -4.6690 16 1 4.2189 5.9976 -5.4735 17 6 3.6513 6.0065 0.0224 18 6 3.5468 5.7133 1.3656 19 6 3.1085 4.4759 1.7849 20 6 3.0041 4.1850 3.2598 21 8 3.4102 5.3365 4.0024 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.1298 1.7254 2.0822 28 1 5.8913 7.4013 -2.2698 29 1 3.9957 6.9801 -0.2935 30 1 3.8106 6.4622 2.0975 31 1 1.9722 3.9377 3.5092 32 1 3.6502 3.3439 3.5109 33 1 3.3680 5.2210 4.9615 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396321814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:05 Heat of formation + Delta-G solvation = -51.553047 kcal Electronic energy + Delta-G solvation = -16911.786594 eV Core-core repulsion = 14219.816051 eV Total energy + Delta-G solvation = -2691.970543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.07830 -37.60355 -37.15627 -35.39295 -33.22551 -32.23531 -29.36608 -28.37613 -25.43647 -24.70895 -23.32591 -21.86868 -20.66026 -19.24623 -18.26223 -17.49163 -16.77952 -16.29606 -15.87340 -15.71143 -15.55723 -14.82031 -14.67183 -14.45378 -14.26041 -13.67834 -13.56975 -13.18556 -12.93536 -12.78596 -12.71571 -12.33425 -12.16320 -12.03819 -11.59228 -11.50386 -11.48227 -11.26247 -11.11191 -10.83444 -9.87506 -8.98276 -8.76209 -8.44198 -6.36247 0.23433 0.82917 1.00429 1.32799 1.40221 1.46113 1.52111 1.76696 2.14973 2.66092 3.54184 3.59511 3.79132 4.27461 4.32832 4.46003 4.49095 4.51211 4.64650 4.74003 4.75847 4.91014 5.00029 5.03692 5.08646 5.24438 5.29797 5.39707 5.51913 5.59811 5.77500 5.90899 6.11169 6.21919 6.57003 6.77031 6.85762 7.09065 8.22715 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.008106 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.407042 B = 3453.210061 C = 5074.615638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C -0.155 4.155 4 C -0.139 4.139 5 C -0.051 4.051 6 C -0.243 4.243 7 S 0.031 5.969 8 C 0.116 3.884 9 C -0.488 4.488 10 H 0.074 0.926 11 C 0.038 3.962 12 N -0.813 5.813 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.262 1.262 16 H -0.258 1.258 17 C -0.205 4.205 18 C -0.072 4.072 19 C -0.203 4.203 20 C 0.151 3.849 21 O -0.587 6.587 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.159 0.841 28 H 0.292 0.708 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 -8.734 5.342 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.271 4.271 4 C -0.170 4.170 5 C -0.058 4.058 6 C -0.357 4.357 7 S 0.294 5.706 8 C 0.111 3.889 9 C -0.517 4.517 10 H 0.092 0.908 11 C -0.179 4.179 12 N -0.438 5.438 13 Si 0.802 3.198 14 H -0.183 1.183 15 H -0.186 1.186 16 H -0.182 1.182 17 C -0.228 4.228 18 C -0.091 4.091 19 C -0.207 4.207 20 C 0.073 3.927 21 O -0.395 6.395 22 H 0.063 0.937 23 H 0.103 0.897 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.177 0.823 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.339 -8.712 3.220 10.713 hybrid contribution 0.389 0.988 1.158 1.571 sum -4.950 -7.724 4.378 10.165 Atomic orbital electron populations 1.21754 0.93456 1.02927 1.01868 1.20249 0.96843 0.87598 1.04158 1.24315 1.06022 1.01502 0.95217 1.20925 1.04256 0.91902 0.99880 1.19059 1.00809 0.94284 0.91666 1.22864 1.17997 0.98781 0.96103 1.83402 1.71529 1.05538 1.10111 1.17330 0.89023 0.88294 0.94299 1.19662 1.20579 1.18701 0.92727 0.90783 1.26786 0.92363 0.94827 1.03910 1.69893 1.10547 1.23863 1.39513 0.85259 0.79489 0.78688 0.76410 1.18338 1.18586 1.18228 1.21095 1.10197 0.99331 0.92167 1.20484 0.97440 0.96375 0.94847 1.19270 1.12980 0.94526 0.93950 1.20486 0.98036 0.86834 0.87304 1.86462 1.90490 1.39199 1.23392 0.93745 0.89701 0.92547 0.88157 0.90378 0.82349 0.89705 0.87642 0.87223 0.92344 0.92678 0.75555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.89 71.98 0.71 -2.25 16 2 C -0.05 -1.18 6.37 29.85 0.19 -0.99 16 3 C -0.15 -5.36 5.64 24.87 0.14 -5.22 16 4 C -0.14 -5.09 9.79 23.32 0.23 -4.86 16 5 C -0.05 -2.36 5.97 -20.36 -0.12 -2.48 16 6 C -0.24 -12.58 6.36 23.53 0.15 -12.43 16 7 S 0.03 1.34 22.79 -56.49 -1.29 0.05 16 8 C 0.12 6.60 5.59 -21.12 -0.12 6.49 16 9 C -0.49 -27.28 8.82 23.34 0.21 -27.07 16 10 H 0.07 4.05 7.75 -2.91 -0.02 4.02 16 11 C 0.04 1.95 5.12 85.24 0.44 2.39 16 12 N -0.81 -43.60 10.98 21.82 0.24 -43.36 16 13 Si 0.98 39.02 29.60 68.60 2.03 41.05 16 14 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 15 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 16 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 17 C -0.20 -11.51 8.68 22.72 0.20 -11.31 16 18 C -0.07 -3.66 9.31 22.08 0.21 -3.46 16 19 C -0.20 -9.31 5.96 -19.20 -0.11 -9.42 16 20 C 0.15 5.11 7.01 71.24 0.50 5.61 16 21 O -0.59 -18.90 12.07 -148.98 -1.80 -20.70 16 22 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.16 4.56 8.02 -2.91 -0.02 4.54 16 28 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 29 H 0.11 6.12 6.16 -2.91 -0.02 6.10 16 30 H 0.11 5.29 6.92 -2.91 -0.02 5.27 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.39 7.57 9.12 -74.06 -0.68 6.89 16 Total: -1.00 -67.23 294.53 2.25 -64.98 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.46 Total: 22.98 kcal Atomic # 6 Polarization: -67.60 SS G_CDS: 2.61 Total: -64.99 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.24 Total: -43.36 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.80 Total: -20.70 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.29 Total: 0.05 kcal Total: -67.23 2.25 -64.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.424 kcal (2) G-P(sol) polarization free energy of solvation -67.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds