Wall clock time and date at job start Mon Mar 30 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47138 * 2 1 4 4 C 1.32536 * 124.57761 * 89.72652 * 3 2 1 5 5 C 1.40442 * 115.87883 * 179.79008 * 4 3 2 6 6 C 1.42004 * 128.63289 * 180.20325 * 5 4 3 7 7 C 1.35187 * 120.86834 * 180.32401 * 6 5 4 8 8 C 1.41264 * 120.39331 * 359.97438 * 7 6 5 9 9 C 1.40997 * 120.20312 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99885 * 205.66853 * 9 8 7 11 11 C 1.39879 * 120.00178 * 25.66569 * 9 8 7 12 12 N 1.30884 * 119.99761 * 15.47026 * 11 9 8 13 13 Si 1.86802 * 120.00084 * 195.47394 * 11 9 8 14 14 H 1.48497 * 109.47125 * 59.99699 * 13 11 9 15 15 H 1.48499 * 109.47147 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46739 * 299.99727 * 13 11 9 17 17 C 1.40354 * 119.59282 * 359.96372 * 8 7 6 18 18 C 1.50704 * 120.01698 * 180.02562 * 17 8 7 19 19 O 1.42893 * 109.47100 * 270.07647 * 18 17 8 20 20 C 1.38874 * 119.97202 * 0.09277 * 17 8 7 21 21 S 1.75472 * 124.58275 * 270.02801 * 3 2 1 22 22 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46800 * 299.99511 * 1 2 3 24 24 H 1.08998 * 109.47653 * 59.99168 * 1 2 3 25 25 H 1.08994 * 109.47664 * 120.00321 * 2 1 3 26 26 H 1.09006 * 109.46800 * 240.00489 * 2 1 3 27 27 H 1.07997 * 122.06016 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.56707 * 0.29807 * 6 5 4 29 29 H 1.08002 * 119.80190 * 179.97438 * 7 6 5 30 30 H 0.97013 * 119.99783 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.47007 * 30.06911 * 18 17 8 32 32 H 1.08999 * 109.47394 * 150.06753 * 18 17 8 33 33 H 0.96702 * 114.00154 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2781 2.1317 1.0912 5 6 2.7462 3.4387 0.8789 6 6 3.0947 4.4230 1.8413 7 6 3.5262 5.6455 1.4582 8 6 3.6390 5.9664 0.0871 9 6 4.0890 7.2428 -0.3079 10 1 3.8004 7.6438 -1.2684 11 6 4.9090 7.9900 0.5440 12 7 5.5046 7.4092 1.5545 13 14 5.1540 9.8167 0.2397 14 1 3.8423 10.5098 0.3054 15 1 6.0602 10.3740 1.2758 16 1 5.7538 10.0186 -1.1037 17 6 3.3005 5.0066 -0.8794 18 6 3.4177 5.3385 -2.3448 19 8 2.1849 5.8932 -2.8076 20 6 2.8562 3.7514 -0.4849 21 16 2.3637 2.3601 -1.4447 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 2.1313 1.7294 2.0827 28 1 3.0136 4.1920 2.8933 29 1 3.7863 6.3812 2.2049 30 1 6.0730 7.9275 2.1456 31 1 4.2193 6.0628 -2.4903 32 1 3.6415 4.4313 -2.9061 33 1 2.1880 6.1314 -3.7448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396322028.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:40 Heat of formation + Delta-G solvation = -33.919595 kcal Electronic energy + Delta-G solvation = -16988.292599 eV Core-core repulsion = 14297.086700 eV Total energy + Delta-G solvation = -2691.205899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.46004 -36.25753 -35.26419 -33.81332 -31.77632 -30.42555 -28.37239 -25.65758 -24.74040 -23.04180 -21.73895 -19.70218 -19.22358 -17.54832 -16.57762 -15.93608 -15.49216 -14.67088 -14.66364 -13.82097 -13.67540 -13.41485 -13.04909 -12.71984 -12.45246 -12.24843 -12.03895 -11.58592 -11.38037 -11.28366 -11.09177 -10.89976 -10.87586 -10.58853 -10.18942 -9.91861 -9.83628 -9.37042 -9.12983 -9.11523 -8.40996 -7.23598 -7.08623 -6.65201 -4.55775 1.90801 2.62516 2.72847 2.87347 2.94387 2.97963 3.06155 3.47004 3.74430 4.44359 5.16655 5.27052 5.38980 5.62751 5.66128 5.87829 5.99410 6.05027 6.10516 6.15468 6.25810 6.33582 6.43403 6.60568 6.63635 6.83356 6.90375 7.03854 7.22273 7.30489 7.70613 7.74956 7.83045 7.98182 8.31746 8.41597 8.60939 8.69453 9.87899 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.032144 B = 0.005990 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.883971 B = 4672.984282 C = 5336.608281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.237 4.237 4 C -0.072 4.072 5 C -0.205 4.205 6 C -0.069 4.069 7 C -0.140 4.140 8 C 0.147 3.853 9 C -0.431 4.431 10 H 0.089 0.911 11 C 0.072 3.928 12 N -0.778 5.778 13 Si 0.917 3.083 14 H -0.260 1.260 15 H -0.276 1.276 16 H -0.262 1.262 17 C -0.205 4.205 18 C 0.142 3.858 19 O -0.568 6.568 20 C -0.040 4.040 21 S 0.009 5.991 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.287 0.713 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 -4.694 -2.315 5.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.351 4.351 4 C -0.102 4.102 5 C -0.210 4.210 6 C -0.090 4.090 7 C -0.159 4.159 8 C 0.141 3.859 9 C -0.459 4.459 10 H 0.107 0.893 11 C -0.148 4.148 12 N -0.401 5.401 13 Si 0.740 3.260 14 H -0.184 1.184 15 H -0.200 1.200 16 H -0.187 1.187 17 C -0.214 4.214 18 C 0.066 3.934 19 O -0.372 6.372 20 C -0.155 4.155 21 S 0.271 5.729 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.113 0.887 29 H 0.145 0.855 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.813 -5.143 -2.970 6.572 hybrid contribution 0.536 1.157 0.939 1.583 sum -2.278 -3.986 -2.032 5.020 Atomic orbital electron populations 1.21783 0.95511 1.00670 1.02322 1.19849 0.95264 0.90964 1.01668 1.23328 1.15896 1.00339 0.95586 1.19623 0.99583 0.93363 0.97592 1.17757 1.15308 0.95500 0.92465 1.20368 0.99041 0.93282 0.96294 1.21008 1.01885 0.96313 0.96727 1.17353 0.86711 0.91161 0.90684 1.19707 1.23792 0.99340 1.03063 0.89309 1.26097 0.93674 1.01371 0.93707 1.69826 1.19829 1.38234 1.12234 0.86206 0.79451 0.80935 0.79377 1.18431 1.20042 1.18654 1.18651 1.17626 0.92129 0.93001 1.20622 0.85652 0.95070 0.92096 1.86704 1.37226 1.84785 1.28483 1.22050 1.01711 0.96588 0.95117 1.83485 1.72680 1.06724 1.10035 0.93105 0.92664 0.92645 0.91384 0.91966 0.86573 0.88677 0.85549 0.90157 0.92941 0.95654 0.79775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 37.16 0.37 -1.55 16 2 C -0.04 -0.56 6.39 -27.88 -0.18 -0.74 16 3 C -0.24 -4.52 5.68 -36.22 -0.21 -4.72 16 4 C -0.07 -1.47 9.97 -40.66 -0.41 -1.88 16 5 C -0.20 -4.84 5.89 -106.83 -0.63 -5.47 16 6 C -0.07 -1.63 9.99 -39.23 -0.39 -2.02 16 7 C -0.14 -3.53 8.57 -39.52 -0.34 -3.87 16 8 C 0.15 3.83 5.56 -106.91 -0.59 3.23 16 9 C -0.43 -10.78 8.10 -37.92 -0.31 -11.09 16 10 H 0.09 2.16 6.84 -52.48 -0.36 1.80 16 11 C 0.07 1.68 5.18 -17.34 -0.09 1.59 16 12 N -0.78 -18.61 10.88 55.54 0.60 -18.01 16 13 Si 0.92 17.42 29.59 -169.99 -5.03 12.39 16 14 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 15 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 17 C -0.21 -5.15 5.59 -103.59 -0.58 -5.73 16 18 C 0.14 3.09 6.41 36.01 0.23 3.33 16 19 O -0.57 -11.75 13.64 -35.23 -0.48 -12.23 16 20 C -0.04 -0.96 6.29 -38.55 -0.24 -1.20 16 21 S 0.01 0.19 22.56 -107.50 -2.43 -2.23 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 28 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 29 H 0.13 3.18 6.13 -52.49 -0.32 2.86 16 30 H 0.29 6.21 8.30 -40.81 -0.34 5.87 16 31 H 0.05 1.12 6.76 -51.93 -0.35 0.77 16 32 H 0.03 0.52 7.59 -51.93 -0.39 0.12 16 33 H 0.36 5.25 9.12 45.56 0.42 5.67 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -28.14 293.07 -9.38 -37.52 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -3.10 Total: 8.27 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: -3.36 Total: -30.13 kcal Atomic # 7 Polarization: -18.61 SS G_CDS: 0.60 Total: -18.01 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.48 Total: -12.23 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.43 Total: -2.23 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.14 -9.38 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396322028.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.599 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds