Wall clock time and date at job start Mon Mar 30 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47138 * 2 1 4 4 C 1.32536 * 124.57761 * 89.72652 * 3 2 1 5 5 C 1.40442 * 115.87883 * 179.79008 * 4 3 2 6 6 C 1.42004 * 128.63289 * 180.20325 * 5 4 3 7 7 C 1.35187 * 120.86834 * 180.32401 * 6 5 4 8 8 C 1.41264 * 120.39331 * 359.97438 * 7 6 5 9 9 C 1.40997 * 120.20312 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99885 * 205.66853 * 9 8 7 11 11 C 1.39879 * 120.00178 * 25.66569 * 9 8 7 12 12 N 1.30884 * 119.99761 * 15.47026 * 11 9 8 13 13 Si 1.86802 * 120.00084 * 195.47394 * 11 9 8 14 14 H 1.48497 * 109.47125 * 59.99699 * 13 11 9 15 15 H 1.48499 * 109.47147 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46739 * 299.99727 * 13 11 9 17 17 C 1.40354 * 119.59282 * 359.96372 * 8 7 6 18 18 C 1.50704 * 120.01698 * 180.02562 * 17 8 7 19 19 O 1.42893 * 109.47100 * 270.07647 * 18 17 8 20 20 C 1.38874 * 119.97202 * 0.09277 * 17 8 7 21 21 S 1.75472 * 124.58275 * 270.02801 * 3 2 1 22 22 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46800 * 299.99511 * 1 2 3 24 24 H 1.08998 * 109.47653 * 59.99168 * 1 2 3 25 25 H 1.08994 * 109.47664 * 120.00321 * 2 1 3 26 26 H 1.09006 * 109.46800 * 240.00489 * 2 1 3 27 27 H 1.07997 * 122.06016 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.56707 * 0.29807 * 6 5 4 29 29 H 1.08002 * 119.80190 * 179.97438 * 7 6 5 30 30 H 0.97013 * 119.99783 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.47007 * 30.06911 * 18 17 8 32 32 H 1.08999 * 109.47394 * 150.06753 * 18 17 8 33 33 H 0.96702 * 114.00154 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2781 2.1317 1.0912 5 6 2.7462 3.4387 0.8789 6 6 3.0947 4.4230 1.8413 7 6 3.5262 5.6455 1.4582 8 6 3.6390 5.9664 0.0871 9 6 4.0890 7.2428 -0.3079 10 1 3.8004 7.6438 -1.2684 11 6 4.9090 7.9900 0.5440 12 7 5.5046 7.4092 1.5545 13 14 5.1540 9.8167 0.2397 14 1 3.8423 10.5098 0.3054 15 1 6.0602 10.3740 1.2758 16 1 5.7538 10.0186 -1.1037 17 6 3.3005 5.0066 -0.8794 18 6 3.4177 5.3385 -2.3448 19 8 2.1849 5.8932 -2.8076 20 6 2.8562 3.7514 -0.4849 21 16 2.3637 2.3601 -1.4447 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 2.1313 1.7294 2.0827 28 1 3.0136 4.1920 2.8933 29 1 3.7863 6.3812 2.2049 30 1 6.0730 7.9275 2.1456 31 1 4.2193 6.0628 -2.4903 32 1 3.6415 4.4313 -2.9061 33 1 2.1880 6.1314 -3.7448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396322028.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:40 Heat of formation + Delta-G solvation = -50.098951 kcal Electronic energy + Delta-G solvation = -16988.994189 eV Core-core repulsion = 14297.086700 eV Total energy + Delta-G solvation = -2691.907489 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21214 -37.87665 -36.91185 -35.40936 -33.29983 -32.21074 -30.03825 -27.29813 -26.44961 -24.52704 -23.39200 -21.42366 -20.82088 -19.32300 -18.22081 -17.63748 -17.13161 -16.36067 -16.26020 -15.37246 -15.15166 -14.86867 -14.59959 -14.32543 -14.02538 -13.93300 -13.60857 -13.04699 -12.94033 -12.89164 -12.63405 -12.51827 -12.26549 -11.99775 -11.70325 -11.55222 -11.50955 -11.10222 -10.87860 -10.77404 -10.16914 -9.01260 -8.81730 -8.37358 -6.39861 0.21642 0.86290 0.96084 1.32981 1.38336 1.39428 1.50452 1.79976 2.16267 2.67603 3.44600 3.94285 3.98073 4.23322 4.29261 4.37615 4.52639 4.54763 4.65048 4.68800 4.88501 4.96760 5.03779 5.05347 5.10115 5.17412 5.37205 5.39734 5.46069 5.54609 5.93991 5.95950 6.00498 6.16004 6.48614 6.77848 6.85249 7.05451 8.17831 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.032144 B = 0.005990 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.883971 B = 4672.984282 C = 5336.608281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.212 4.212 4 C -0.097 4.097 5 C -0.216 4.216 6 C -0.076 4.076 7 C -0.161 4.161 8 C 0.114 3.886 9 C -0.461 4.461 10 H 0.085 0.915 11 C 0.037 3.963 12 N -0.808 5.808 13 Si 0.987 3.013 14 H -0.261 1.261 15 H -0.264 1.264 16 H -0.256 1.256 17 C -0.231 4.231 18 C 0.151 3.849 19 O -0.584 6.584 20 C -0.077 4.077 21 S 0.026 5.974 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.295 0.705 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 -6.068 -2.613 7.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.327 4.327 4 C -0.126 4.126 5 C -0.222 4.222 6 C -0.097 4.097 7 C -0.181 4.181 8 C 0.108 3.892 9 C -0.490 4.490 10 H 0.103 0.897 11 C -0.181 4.181 12 N -0.432 5.432 13 Si 0.807 3.193 14 H -0.186 1.186 15 H -0.188 1.188 16 H -0.180 1.180 17 C -0.239 4.239 18 C 0.075 3.925 19 O -0.391 6.391 20 C -0.192 4.192 21 S 0.288 5.712 22 H 0.100 0.900 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.161 0.839 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.454 -6.525 -3.291 8.083 hybrid contribution 0.640 1.354 0.991 1.796 sum -2.814 -5.171 -2.301 6.320 Atomic orbital electron populations 1.21757 0.94045 1.02552 1.01614 1.20071 0.96384 0.88050 1.03481 1.24017 1.12616 1.01848 0.94209 1.19814 1.00892 0.92371 0.99480 1.18217 1.14770 0.96836 0.92388 1.20644 0.98425 0.92897 0.97702 1.21035 1.03396 0.97061 0.96597 1.17729 0.87836 0.92196 0.91402 1.19844 1.25384 0.99974 1.03748 0.89699 1.26889 0.92682 1.05431 0.93092 1.69860 1.20331 1.39979 1.13033 0.85165 0.79317 0.75183 0.79655 1.18562 1.18754 1.18021 1.19084 1.17707 0.92588 0.94522 1.20458 0.85819 0.95458 0.90802 1.86622 1.36693 1.84817 1.30999 1.22436 1.02587 0.97720 0.96461 1.83335 1.72132 1.05297 1.10439 0.90001 0.93087 0.93695 0.89101 0.90611 0.83895 0.86377 0.86466 0.89351 0.93243 0.94485 0.76777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.89 71.98 0.71 -2.51 16 2 C -0.04 -1.04 6.39 29.85 0.19 -0.85 16 3 C -0.21 -7.55 5.68 24.54 0.14 -7.41 16 4 C -0.10 -3.78 9.97 21.66 0.22 -3.56 16 5 C -0.22 -10.21 5.89 -21.30 -0.13 -10.34 16 6 C -0.08 -3.67 9.99 22.50 0.22 -3.45 16 7 C -0.16 -8.48 8.57 22.31 0.19 -8.29 16 8 C 0.11 6.19 5.56 -21.34 -0.12 6.07 16 9 C -0.46 -24.00 8.10 23.34 0.19 -23.81 16 10 H 0.08 4.30 6.84 -2.91 -0.02 4.28 16 11 C 0.04 1.75 5.18 85.23 0.44 2.19 16 12 N -0.81 -39.80 10.88 21.82 0.24 -39.56 16 13 Si 0.99 36.03 29.59 68.60 2.03 38.06 16 14 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 15 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 16 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 17 C -0.23 -11.88 5.59 -19.20 -0.11 -11.99 16 18 C 0.15 6.69 6.41 71.24 0.46 7.14 16 19 O -0.58 -24.14 13.64 -148.98 -2.03 -26.17 16 20 C -0.08 -3.77 6.29 22.94 0.14 -3.62 16 21 S 0.03 1.06 22.56 -56.49 -1.27 -0.22 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.12 6.21 6.13 -2.91 -0.02 6.20 16 30 H 0.30 13.02 8.30 -92.70 -0.77 12.25 16 31 H 0.05 2.17 6.76 -2.39 -0.02 2.15 16 32 H 0.04 1.51 7.59 -2.39 -0.02 1.49 16 33 H 0.38 10.95 9.12 -74.06 -0.68 10.28 16 Total: -1.00 -62.06 293.07 1.97 -60.09 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.46 Total: 28.23 kcal Atomic # 6 Polarization: -62.98 SS G_CDS: 2.55 Total: -60.43 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.24 Total: -39.56 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -2.03 Total: -26.17 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -1.27 Total: -0.22 kcal Total: -62.06 1.97 -60.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396322028.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.989 kcal (2) G-P(sol) polarization free energy of solvation -62.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds