Wall clock time and date at job start Mon Mar 30 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46817 * 2 1 4 4 C 1.35220 * 119.57110 * 266.71516 * 3 2 1 5 5 C 1.41224 * 120.39952 * 180.32186 * 4 3 2 6 6 C 1.40996 * 120.20294 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00668 * 331.06640 * 6 5 4 8 8 C 1.39887 * 120.00006 * 151.06294 * 6 5 4 9 9 N 1.30883 * 119.99648 * 350.21819 * 8 6 5 10 10 Si 1.86800 * 120.00184 * 170.21509 * 8 6 5 11 11 H 1.48504 * 109.46959 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46912 * 120.00106 * 10 8 6 13 13 H 1.48499 * 109.47142 * 240.00458 * 10 8 6 14 14 C 1.40393 * 119.59482 * 359.93624 * 5 4 3 15 15 C 1.38836 * 119.96535 * 0.04214 * 14 5 4 16 16 S 1.76056 * 130.45849 * 179.97438 * 15 14 5 17 17 C 1.75473 * 91.54841 * 180.02562 * 16 15 14 18 18 C 1.32532 * 110.84624 * 0.02562 * 17 16 15 19 19 C 1.50708 * 122.06012 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.46691 * 5.35495 * 19 18 17 21 21 C 1.40383 * 120.17007 * 359.97438 * 15 14 5 22 22 H 1.08998 * 109.46864 * 186.99044 * 1 2 3 23 23 H 1.09006 * 109.47128 * 306.98074 * 1 2 3 24 24 H 1.08992 * 109.47351 * 66.98861 * 1 2 3 25 25 H 1.08996 * 109.47354 * 240.00357 * 2 1 3 26 26 H 1.08994 * 109.47410 * 119.99716 * 2 1 3 27 27 H 1.08004 * 119.79932 * 0.25613 * 4 3 2 28 28 H 0.97007 * 119.99624 * 179.97438 * 9 8 6 29 29 H 1.07994 * 120.01718 * 180.02562 * 14 5 4 30 30 H 1.08004 * 124.57905 * 180.02562 * 17 16 15 31 31 H 1.08997 * 109.47017 * 125.35164 * 19 18 17 32 32 H 1.09005 * 109.47301 * 245.35450 * 19 18 17 33 33 H 0.96703 * 113.99643 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3182 2.0275 -1.1741 5 6 2.7963 3.3562 -1.1941 6 6 3.0937 3.9846 -2.4208 7 1 3.4126 3.3940 -3.2669 8 6 2.9756 5.3732 -2.5420 9 7 2.4104 6.0677 -1.5873 10 14 3.6245 6.2364 -4.0662 11 1 4.2133 5.2337 -4.9899 12 1 2.5098 6.9421 -4.7478 13 1 4.6659 7.2193 -3.6729 14 6 2.9730 4.0478 0.0148 15 6 2.6787 3.4242 1.2198 16 16 2.7955 4.0195 2.8726 17 6 2.2115 2.4940 3.5137 18 6 1.9618 1.6358 2.5352 19 6 1.4474 0.2447 2.8030 20 8 1.1781 0.0970 4.1985 21 6 2.2041 2.1031 1.2331 22 1 -0.3633 -1.0200 0.1251 23 1 -0.3634 0.6182 0.8210 24 1 -0.3633 0.4017 -0.9458 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.1810 1.4924 -2.1022 28 1 2.3288 7.0307 -1.6712 29 1 3.3379 5.0642 0.0074 30 1 2.0742 2.2829 4.5640 31 1 0.5305 0.0812 2.2367 32 1 2.1977 -0.4850 2.4984 33 1 0.8426 -0.7761 4.4441 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396322274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:16 Heat of formation + Delta-G solvation = -23.724515 kcal Electronic energy + Delta-G solvation = -17253.372233 eV Core-core repulsion = 14562.608426 eV Total energy + Delta-G solvation = -2690.763807 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.01433 -36.74304 -34.81257 -33.89716 -32.51542 -29.12155 -28.34502 -26.32333 -25.26075 -23.06430 -21.42517 -20.37764 -18.72857 -17.43194 -17.06000 -16.08674 -15.07654 -14.84675 -14.72047 -14.19201 -13.70202 -13.50784 -13.17354 -12.97782 -12.59353 -11.92685 -11.79041 -11.52348 -11.44936 -11.33311 -11.13659 -11.00348 -10.74262 -10.44157 -10.10668 -10.08553 -9.85738 -9.61371 -9.36607 -9.13241 -8.26257 -7.30252 -6.88278 -6.56019 -4.48754 1.91126 2.72841 2.74729 2.91205 3.00318 3.05087 3.12892 3.45847 3.81873 4.46239 4.50616 5.31859 5.42353 5.49354 5.54764 5.77604 5.82733 5.88721 5.99417 6.17428 6.20712 6.25207 6.46997 6.63277 6.75750 6.87949 6.96573 7.04007 7.23097 7.31770 7.67961 7.75052 7.84131 7.86799 8.02936 8.40297 8.67712 8.73597 10.03988 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.006628 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.858962 B = 4223.437670 C = 5131.690133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.028 4.028 4 C -0.186 4.186 5 C 0.123 3.877 6 C -0.442 4.442 7 H 0.083 0.917 8 C 0.069 3.931 9 N -0.785 5.785 10 Si 0.915 3.085 11 H -0.259 1.259 12 H -0.273 1.273 13 H -0.271 1.271 14 C -0.152 4.152 15 C -0.072 4.072 16 S -0.003 6.003 17 C -0.234 4.234 18 C -0.057 4.057 19 C 0.126 3.874 20 O -0.573 6.573 21 C -0.190 4.190 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.283 0.717 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 -7.617 3.106 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.031 4.031 4 C -0.206 4.206 5 C 0.117 3.883 6 C -0.472 4.472 7 H 0.102 0.898 8 C -0.150 4.150 9 N -0.410 5.410 10 Si 0.739 3.261 11 H -0.183 1.183 12 H -0.198 1.198 13 H -0.196 1.196 14 C -0.178 4.178 15 C -0.186 4.186 16 S 0.259 5.741 17 C -0.367 4.367 18 C -0.069 4.069 19 C 0.047 3.953 20 O -0.378 6.378 21 C -0.196 4.196 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.154 -5.409 3.922 6.780 hybrid contribution -0.437 -1.246 -1.265 1.828 sum -1.590 -6.654 2.657 7.340 Atomic orbital electron populations 1.21821 0.95652 1.00447 1.02433 1.20799 0.95648 0.94723 1.01972 1.18965 0.98550 0.93802 0.91760 1.20585 1.07150 0.97312 0.95552 1.17477 0.87633 0.90468 0.92710 1.19629 1.38337 0.91890 0.97339 0.89844 1.25998 0.92885 0.97901 0.98186 1.69832 1.30197 1.08800 1.32168 0.86136 0.79344 0.79588 0.80997 1.18281 1.19787 1.19573 1.20678 1.07675 1.01159 0.88336 1.22272 1.04270 0.96318 0.95777 1.83680 1.73473 1.16995 0.99966 1.24321 1.13614 0.96838 1.01922 1.18299 1.01386 0.94809 0.92370 1.21226 0.98807 0.94219 0.81043 1.86485 1.88329 1.37705 1.25289 1.17260 1.16013 0.94814 0.91492 0.93367 0.92346 0.92469 0.91840 0.91291 0.88072 0.90542 0.85567 0.83189 0.91583 0.92643 0.78081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.90 37.16 0.33 -1.82 16 2 C -0.09 -1.55 5.32 -27.88 -0.15 -1.69 16 3 C -0.03 -0.61 5.15 -104.27 -0.54 -1.14 16 4 C -0.19 -4.30 9.27 -39.52 -0.37 -4.67 16 5 C 0.12 3.17 5.55 -106.91 -0.59 2.57 16 6 C -0.44 -11.11 9.04 -37.92 -0.34 -11.45 16 7 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 8 C 0.07 1.66 5.26 -17.34 -0.09 1.57 16 9 N -0.79 -19.82 10.79 55.54 0.60 -19.22 16 10 Si 0.92 17.90 29.57 -169.99 -5.03 12.88 16 11 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 14 C -0.15 -3.99 8.68 -38.55 -0.33 -4.32 16 15 C -0.07 -1.77 6.46 -38.55 -0.25 -2.02 16 16 S 0.00 -0.07 23.29 -107.50 -2.50 -2.58 16 17 C -0.23 -4.83 10.32 28.82 0.30 -4.53 16 18 C -0.06 -1.16 5.82 -105.70 -0.61 -1.78 16 19 C 0.13 2.01 5.54 36.01 0.20 2.21 16 20 O -0.57 -8.32 12.46 -35.23 -0.44 -8.76 16 21 C -0.19 -4.35 5.85 -106.83 -0.62 -4.97 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.92 6.62 -51.93 -0.34 0.58 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.96 8.03 -51.93 -0.42 0.55 16 26 H 0.07 1.04 4.53 -51.93 -0.24 0.80 16 27 H 0.10 2.14 8.04 -52.48 -0.42 1.72 16 28 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 29 H 0.13 3.45 6.17 -52.49 -0.32 3.12 16 30 H 0.15 2.87 7.41 -52.48 -0.39 2.48 16 31 H 0.07 0.98 4.64 -51.93 -0.24 0.74 16 32 H 0.06 0.81 6.61 -51.93 -0.34 0.47 16 33 H 0.37 3.28 9.12 45.56 0.42 3.69 16 LS Contribution 282.19 15.07 4.25 4.25 Total: -1.00 -28.43 282.19 -8.88 -37.32 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -2.69 Total: 8.17 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -3.07 Total: -32.05 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.60 Total: -19.22 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.44 Total: -8.76 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.50 Total: -2.58 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.43 -8.88 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396322274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.591 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds