Wall clock time and date at job start Mon Mar 30 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46817 * 2 1 4 4 C 1.35220 * 119.57110 * 266.71516 * 3 2 1 5 5 C 1.41224 * 120.39952 * 180.32186 * 4 3 2 6 6 C 1.40996 * 120.20294 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00668 * 331.06640 * 6 5 4 8 8 C 1.39887 * 120.00006 * 151.06294 * 6 5 4 9 9 N 1.30883 * 119.99648 * 350.21819 * 8 6 5 10 10 Si 1.86800 * 120.00184 * 170.21509 * 8 6 5 11 11 H 1.48504 * 109.46959 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46912 * 120.00106 * 10 8 6 13 13 H 1.48499 * 109.47142 * 240.00458 * 10 8 6 14 14 C 1.40393 * 119.59482 * 359.93624 * 5 4 3 15 15 C 1.38836 * 119.96535 * 0.04214 * 14 5 4 16 16 S 1.76056 * 130.45849 * 179.97438 * 15 14 5 17 17 C 1.75473 * 91.54841 * 180.02562 * 16 15 14 18 18 C 1.32532 * 110.84624 * 0.02562 * 17 16 15 19 19 C 1.50708 * 122.06012 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.46691 * 5.35495 * 19 18 17 21 21 C 1.40383 * 120.17007 * 359.97438 * 15 14 5 22 22 H 1.08998 * 109.46864 * 186.99044 * 1 2 3 23 23 H 1.09006 * 109.47128 * 306.98074 * 1 2 3 24 24 H 1.08992 * 109.47351 * 66.98861 * 1 2 3 25 25 H 1.08996 * 109.47354 * 240.00357 * 2 1 3 26 26 H 1.08994 * 109.47410 * 119.99716 * 2 1 3 27 27 H 1.08004 * 119.79932 * 0.25613 * 4 3 2 28 28 H 0.97007 * 119.99624 * 179.97438 * 9 8 6 29 29 H 1.07994 * 120.01718 * 180.02562 * 14 5 4 30 30 H 1.08004 * 124.57905 * 180.02562 * 17 16 15 31 31 H 1.08997 * 109.47017 * 125.35164 * 19 18 17 32 32 H 1.09005 * 109.47301 * 245.35450 * 19 18 17 33 33 H 0.96703 * 113.99643 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3182 2.0275 -1.1741 5 6 2.7963 3.3562 -1.1941 6 6 3.0937 3.9846 -2.4208 7 1 3.4126 3.3940 -3.2669 8 6 2.9756 5.3732 -2.5420 9 7 2.4104 6.0677 -1.5873 10 14 3.6245 6.2364 -4.0662 11 1 4.2133 5.2337 -4.9899 12 1 2.5098 6.9421 -4.7478 13 1 4.6659 7.2193 -3.6729 14 6 2.9730 4.0478 0.0148 15 6 2.6787 3.4242 1.2198 16 16 2.7955 4.0195 2.8726 17 6 2.2115 2.4940 3.5137 18 6 1.9618 1.6358 2.5352 19 6 1.4474 0.2447 2.8030 20 8 1.1781 0.0970 4.1985 21 6 2.2041 2.1031 1.2331 22 1 -0.3633 -1.0200 0.1251 23 1 -0.3634 0.6182 0.8210 24 1 -0.3633 0.4017 -0.9458 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.1810 1.4924 -2.1022 28 1 2.3288 7.0307 -1.6712 29 1 3.3379 5.0642 0.0074 30 1 2.0742 2.2829 4.5640 31 1 0.5305 0.0812 2.2367 32 1 2.1977 -0.4850 2.4984 33 1 0.8426 -0.7761 4.4441 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396322274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:16 Heat of formation + Delta-G solvation = -40.787050 kcal Electronic energy + Delta-G solvation = -17254.112120 eV Core-core repulsion = 14562.608426 eV Total energy + Delta-G solvation = -2691.503694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65952 -38.11091 -36.41210 -35.40366 -34.16991 -30.88087 -29.94796 -27.69427 -27.05847 -24.50281 -23.15611 -22.02914 -20.34723 -19.00274 -18.54594 -17.76022 -16.69309 -16.41470 -15.99817 -15.88459 -15.26852 -14.88480 -14.67601 -14.41140 -14.22099 -13.65598 -13.24126 -13.18686 -12.93875 -12.88321 -12.69680 -12.50832 -12.26398 -11.88031 -11.68310 -11.64621 -11.48527 -11.11745 -11.02085 -10.78732 -9.97194 -9.12883 -8.67802 -8.30606 -6.39411 0.19272 0.91768 0.98353 1.32255 1.38221 1.41400 1.53680 1.76858 2.17408 2.68245 3.40618 3.54129 4.02966 4.18883 4.25075 4.38731 4.52893 4.56008 4.65054 4.72257 4.84853 4.96450 4.97792 5.09825 5.12918 5.25921 5.32353 5.44162 5.45827 5.59834 5.88309 5.97811 6.08752 6.18806 6.54027 6.81170 6.89317 7.00488 8.26949 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.006628 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.858962 B = 4223.437670 C = 5131.690133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.023 4.023 4 C -0.203 4.203 5 C 0.096 3.904 6 C -0.475 4.475 7 H 0.089 0.911 8 C 0.027 3.973 9 N -0.824 5.824 10 Si 0.990 3.010 11 H -0.251 1.251 12 H -0.266 1.266 13 H -0.268 1.268 14 C -0.183 4.183 15 C -0.102 4.102 16 S -0.007 6.007 17 C -0.232 4.232 18 C -0.065 4.065 19 C 0.133 3.867 20 O -0.586 6.586 21 C -0.199 4.199 22 H 0.087 0.913 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.288 0.712 29 H 0.101 0.899 30 H 0.170 0.830 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 -10.070 3.363 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.026 4.026 4 C -0.223 4.223 5 C 0.090 3.910 6 C -0.504 4.504 7 H 0.107 0.893 8 C -0.188 4.188 9 N -0.450 5.450 10 Si 0.810 3.190 11 H -0.174 1.174 12 H -0.190 1.190 13 H -0.193 1.193 14 C -0.210 4.210 15 C -0.216 4.216 16 S 0.255 5.745 17 C -0.365 4.365 18 C -0.077 4.077 19 C 0.054 3.946 20 O -0.395 6.395 21 C -0.204 4.204 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.134 0.866 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.187 0.813 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.851 -7.899 4.198 9.134 hybrid contribution -0.265 -0.576 -1.161 1.322 sum -2.116 -8.474 3.037 9.247 Atomic orbital electron populations 1.21786 0.94053 1.02625 1.01428 1.20904 0.96844 0.91293 1.03853 1.19498 0.96409 0.96198 0.90457 1.20809 1.07723 0.96661 0.97109 1.17869 0.88236 0.91987 0.92895 1.19914 1.39926 0.93003 0.97563 0.89292 1.26913 0.92392 0.98193 1.01264 1.69926 1.31486 1.09279 1.34317 0.85030 0.78694 0.78288 0.76967 1.17425 1.19035 1.19269 1.20527 1.10189 1.00595 0.89660 1.22636 1.04727 0.97737 0.96516 1.83596 1.73705 1.18515 0.98688 1.24608 1.13162 0.95764 1.02950 1.18697 1.00691 0.97362 0.90953 1.21146 0.99809 0.91336 0.82281 1.86409 1.88646 1.40294 1.24144 1.17736 1.15168 0.94196 0.93344 0.89384 0.93622 0.93461 0.90225 0.89185 0.86590 0.90089 0.88085 0.81253 0.90033 0.90601 0.74873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.90 71.98 0.64 -3.02 16 2 C -0.09 -2.71 5.32 29.85 0.16 -2.55 16 3 C -0.02 -0.98 5.15 -19.63 -0.10 -1.08 16 4 C -0.20 -9.50 9.27 22.31 0.21 -9.29 16 5 C 0.10 5.14 5.55 -21.35 -0.12 5.02 16 6 C -0.47 -24.81 9.04 23.35 0.21 -24.60 16 7 H 0.09 4.35 7.86 -2.91 -0.02 4.33 16 8 C 0.03 1.36 5.26 85.23 0.45 1.81 16 9 N -0.82 -43.76 10.79 21.82 0.24 -43.53 16 10 Si 0.99 37.49 29.57 68.60 2.03 39.52 16 11 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 12 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 13 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 14 C -0.18 -10.17 8.68 22.94 0.20 -9.97 16 15 C -0.10 -5.17 6.46 22.94 0.15 -5.02 16 16 S -0.01 -0.31 23.29 -56.49 -1.32 -1.63 16 17 C -0.23 -9.23 10.32 66.68 0.69 -8.54 16 18 C -0.07 -2.55 5.82 -20.47 -0.12 -2.67 16 19 C 0.13 3.71 5.54 71.24 0.39 4.10 16 20 O -0.59 -14.47 12.46 -148.98 -1.86 -16.32 16 21 C -0.20 -8.98 5.85 -21.29 -0.12 -9.11 16 22 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.30 6.62 -2.38 -0.02 1.28 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 2.12 8.03 -2.39 -0.02 2.10 16 26 H 0.09 2.28 4.53 -2.39 -0.01 2.27 16 27 H 0.12 4.90 8.04 -2.91 -0.02 4.88 16 28 H 0.29 13.88 8.30 -92.70 -0.77 13.11 16 29 H 0.10 5.96 6.17 -2.91 -0.02 5.95 16 30 H 0.17 6.04 7.41 -2.91 -0.02 6.02 16 31 H 0.08 2.05 4.64 -2.39 -0.01 2.04 16 32 H 0.08 1.84 6.61 -2.38 -0.02 1.82 16 33 H 0.40 5.06 9.12 -74.06 -0.68 4.38 16 Total: -1.00 -64.53 282.19 2.20 -62.33 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.48 Total: 24.54 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 2.63 Total: -64.90 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.24 Total: -43.53 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -1.86 Total: -16.32 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.32 Total: -1.63 kcal Total: -64.53 2.20 -62.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396322274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.542 kcal (2) G-P(sol) polarization free energy of solvation -64.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds