Wall clock time and date at job start Mon Mar 30 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47488 * 2 1 4 4 C 1.35947 * 119.77032 * 268.17426 * 3 2 1 5 5 C 1.38928 * 120.65906 * 179.97438 * 4 3 2 6 6 C 1.37699 * 120.23834 * 0.02562 * 5 4 3 7 7 C 1.39610 * 120.27870 * 359.97438 * 6 5 4 8 8 S 1.75980 * 130.27083 * 180.02562 * 7 6 5 9 9 C 1.75457 * 91.78735 * 179.97438 * 8 7 6 10 10 C 1.39926 * 124.82197 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99806 * 180.02562 * 10 9 8 12 12 C 1.40185 * 119.99948 * 0.04551 * 10 9 8 13 13 N 1.30758 * 120.00319 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99940 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46733 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47286 * 119.99667 * 14 12 10 17 17 H 1.48496 * 109.47193 * 240.00055 * 14 12 10 18 18 C 1.36933 * 110.35365 * 0.02562 * 9 8 7 19 19 C 1.50697 * 122.48729 * 180.02562 * 18 9 8 20 20 O 1.42902 * 109.47418 * 264.00042 * 19 18 9 21 21 C 1.39801 * 115.02483 * 359.97438 * 18 9 8 22 22 H 1.08999 * 109.47560 * 186.99291 * 1 2 3 23 23 H 1.09009 * 109.47089 * 306.99334 * 1 2 3 24 24 H 1.09006 * 109.47315 * 66.98955 * 1 2 3 25 25 H 1.09007 * 109.47102 * 239.99982 * 2 1 3 26 26 H 1.09007 * 109.47268 * 120.00242 * 2 1 3 27 27 H 1.08006 * 119.66671 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.88117 * 179.72565 * 5 4 3 29 29 H 1.07993 * 119.86478 * 180.02562 * 6 5 4 30 30 H 0.96997 * 119.99959 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47465 * 24.00405 * 19 18 9 32 32 H 1.09007 * 109.47376 * 144.00208 * 19 18 9 33 33 H 0.96695 * 114.00279 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2929 2.0446 -1.1795 5 6 2.7561 3.3542 -1.2010 6 6 2.9580 4.0378 -0.0229 7 6 2.6984 3.4209 1.2023 8 16 2.8601 4.0367 2.8429 9 6 2.3005 2.5205 3.5259 10 6 2.1632 2.2630 4.8944 11 1 1.8111 1.2987 5.2298 12 6 2.4822 3.2570 5.8301 13 7 2.9087 4.4245 5.4241 14 14 2.2982 2.9135 7.6571 15 1 1.8013 1.5277 7.8525 16 1 3.6159 3.0661 8.3246 17 1 1.3306 3.8735 8.2462 18 6 2.0184 1.6246 2.5295 19 6 1.5158 0.2322 2.8114 20 8 2.6149 -0.6811 2.8064 21 6 2.2301 2.0980 1.2312 22 1 -0.3634 -1.0200 0.1251 23 1 -0.3634 0.6184 0.8209 24 1 -0.3634 0.4017 -0.9459 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.1381 1.5168 -2.1090 28 1 2.9632 3.8362 -2.1451 29 1 3.3179 5.0557 -0.0467 30 1 3.1298 5.1120 6.0716 31 1 1.0307 0.2115 3.7873 32 1 0.7990 -0.0579 2.0432 33 1 2.3648 -1.5985 2.9818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396323201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:46 Heat of formation + Delta-G solvation = -36.224751 kcal Electronic energy + Delta-G solvation = -17499.480683 eV Core-core repulsion = 14808.174825 eV Total energy + Delta-G solvation = -2691.305858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80228 -36.14842 -34.82040 -33.34469 -33.04552 -29.13940 -28.46721 -26.63325 -24.55795 -22.71983 -21.78024 -20.26350 -18.52012 -17.45581 -16.48721 -15.80462 -15.68715 -14.89571 -14.51996 -13.87814 -13.35896 -13.24190 -12.88601 -12.59759 -12.30898 -12.24758 -11.81444 -11.66104 -11.43186 -11.34979 -11.15209 -10.67899 -10.52285 -10.44499 -10.30824 -9.79853 -9.59678 -9.31423 -9.04027 -8.90371 -8.19372 -7.34585 -7.20762 -6.33382 -4.70144 2.10800 2.48071 2.79088 2.82874 2.90365 3.28356 3.48519 3.56331 3.84127 4.63101 4.91824 5.53757 5.61077 5.71801 5.88879 5.99782 6.06311 6.11512 6.26375 6.30939 6.33670 6.46390 6.56860 6.65769 6.71599 6.86794 6.89909 7.17172 7.24954 7.39171 7.56016 7.60369 7.77022 7.91551 8.10912 8.33478 8.43162 8.53159 9.61364 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.023418 B = 0.008038 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.384712 B = 3482.613387 C = 4453.560274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.110 4.110 4 C -0.110 4.110 5 C -0.194 4.194 6 C -0.059 4.059 7 C -0.264 4.264 8 S 0.134 5.866 9 C 0.070 3.930 10 C -0.376 4.376 11 H 0.101 0.899 12 C 0.053 3.947 13 N -0.772 5.772 14 Si 0.937 3.063 15 H -0.255 1.255 16 H -0.267 1.267 17 H -0.267 1.267 18 C -0.336 4.336 19 C 0.154 3.846 20 O -0.570 6.570 21 C 0.040 3.960 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.301 0.699 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 -3.445 -1.653 4.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.111 4.111 4 C -0.130 4.130 5 C -0.215 4.215 6 C -0.081 4.081 7 C -0.378 4.378 8 S 0.396 5.604 9 C -0.049 4.049 10 C -0.409 4.409 11 H 0.118 0.882 12 C -0.169 4.169 13 N -0.398 5.398 14 Si 0.760 3.240 15 H -0.179 1.179 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.342 4.342 19 C 0.077 3.923 20 O -0.374 6.374 21 C 0.032 3.968 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.817 -1.283 -1.074 2.470 hybrid contribution -0.734 -1.748 0.169 1.903 sum -2.551 -3.031 -0.905 4.063 Atomic orbital electron populations 1.21800 0.96258 1.00415 1.01662 1.20779 0.94958 0.94550 1.02841 1.19277 1.04466 0.95493 0.91910 1.20117 1.01631 0.95072 0.96174 1.20433 1.08900 0.95778 0.96374 1.20143 0.99321 0.97829 0.90811 1.23623 1.13450 0.99768 1.00975 1.84789 1.70719 1.15000 0.89888 1.21256 0.93462 0.94111 0.96108 1.19398 1.32643 0.99852 0.89054 0.88163 1.26350 0.92616 0.93927 1.04034 1.68662 1.28892 1.03938 1.38321 0.85726 0.79288 0.80290 0.78665 1.17857 1.19167 1.19212 1.17910 1.29645 0.96315 0.90365 1.20578 0.87246 0.86727 0.97783 1.86784 1.37008 1.19170 1.94441 1.17631 0.94915 0.91795 0.92421 0.93573 0.92151 0.93391 0.93118 0.88791 0.88326 0.88043 0.88220 0.88578 0.95034 0.93389 0.80458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.79 37.16 0.33 -2.00 16 2 C -0.09 -1.74 5.30 -27.89 -0.15 -1.89 16 3 C -0.11 -2.40 5.17 -104.04 -0.54 -2.94 16 4 C -0.11 -2.23 9.55 -40.15 -0.38 -2.61 16 5 C -0.19 -3.93 10.04 -39.52 -0.40 -4.33 16 6 C -0.06 -1.29 10.07 -39.27 -0.40 -1.69 16 7 C -0.26 -6.53 6.47 -38.27 -0.25 -6.77 16 8 S 0.13 3.36 20.13 -107.50 -2.16 1.19 16 9 C 0.07 1.83 6.11 -39.42 -0.24 1.59 16 10 C -0.38 -9.26 8.83 -38.22 -0.34 -9.60 16 11 H 0.10 2.36 6.53 -52.49 -0.34 2.02 16 12 C 0.05 1.20 5.50 -17.28 -0.10 1.10 16 13 N -0.77 -18.00 10.58 55.56 0.59 -17.41 16 14 Si 0.94 16.91 29.56 -169.99 -5.03 11.88 16 15 H -0.26 -4.55 7.11 56.52 0.40 -4.14 16 16 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 17 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 18 C -0.34 -8.40 5.58 -104.51 -0.58 -8.98 16 19 C 0.15 3.28 5.88 36.00 0.21 3.49 16 20 O -0.57 -11.65 12.19 -35.23 -0.43 -12.08 16 21 C 0.04 0.99 5.82 -107.11 -0.62 0.37 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.07 7.09 -51.92 -0.37 0.70 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 26 H 0.09 1.81 3.94 -51.92 -0.20 1.60 16 27 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.30 6.24 8.29 -40.82 -0.34 5.90 16 31 H 0.03 0.66 6.63 -51.93 -0.34 0.31 16 32 H 0.05 0.93 3.44 -51.93 -0.18 0.75 16 33 H 0.35 5.10 9.12 45.56 0.42 5.51 16 LS Contribution 280.45 15.07 4.23 4.23 Total: -1.00 -28.41 280.45 -8.94 -37.35 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -2.69 Total: 9.09 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: -3.45 Total: -34.26 kcal Atomic # 7 Polarization: -18.00 SS G_CDS: 0.59 Total: -17.41 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.43 Total: -12.08 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.16 Total: 1.19 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.41 -8.94 -37.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396323201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.127 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds