Wall clock time and date at job start Mon Mar 30 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46766 * 2 1 4 4 C 1.31865 * 122.55678 * 90.03138 * 3 2 1 5 5 C 1.50707 * 124.32696 * 0.03399 * 4 3 2 6 6 O 1.42893 * 109.47325 * 89.72669 * 5 4 3 7 7 S 1.75298 * 111.34005 * 179.77036 * 4 3 2 8 8 C 1.75887 * 92.17601 * 0.22453 * 7 4 3 9 9 C 1.39428 * 109.76481 * 0.02562 * 8 7 4 10 10 C 1.41351 * 118.98900 * 180.02562 * 9 8 7 11 11 C 1.37792 * 120.90360 * 359.96956 * 10 9 8 12 12 C 1.37885 * 120.76451 * 0.05246 * 11 10 9 13 13 C 1.40405 * 119.88231 * 359.91659 * 12 11 10 14 14 C 1.40926 * 120.11294 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00244 * 204.98071 * 14 13 12 16 16 C 1.39931 * 120.00244 * 24.98704 * 14 13 12 17 17 N 1.30863 * 120.00064 * 17.87402 * 16 14 13 18 18 Si 1.86797 * 120.00163 * 197.88242 * 16 14 13 19 19 H 1.48504 * 109.47351 * 59.99582 * 18 16 14 20 20 H 1.48494 * 109.47307 * 179.97438 * 18 16 14 21 21 H 1.48510 * 109.47118 * 299.99716 * 18 16 14 22 22 H 1.08994 * 109.46757 * 299.99295 * 1 2 3 23 23 H 1.08991 * 109.47032 * 59.99740 * 1 2 3 24 24 H 1.09002 * 109.46457 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47117 * 240.00554 * 2 1 3 26 26 H 1.08994 * 109.47459 * 120.00533 * 2 1 3 27 27 H 1.09000 * 109.47099 * 329.71989 * 5 4 3 28 28 H 1.08999 * 109.46766 * 209.72921 * 5 4 3 29 29 H 0.96698 * 114.00262 * 180.02562 * 6 5 4 30 30 H 1.08008 * 119.54563 * 179.97438 * 10 9 8 31 31 H 1.07999 * 119.61146 * 180.02562 * 11 10 9 32 32 H 1.07999 * 120.05815 * 180.02562 * 12 11 10 33 33 H 0.96999 * 120.00560 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2694 2.0897 1.1114 5 6 2.0736 1.5313 2.4975 6 8 3.2801 0.9009 2.9319 7 16 2.8484 3.7087 0.7704 8 6 2.7516 3.4499 -0.9666 9 6 2.2886 2.1605 -1.2260 10 6 2.1368 1.7443 -2.5683 11 6 2.4387 2.5932 -3.6109 12 6 2.8980 3.8708 -3.3699 13 6 3.0602 4.3182 -2.0490 14 6 3.5287 5.6232 -1.7970 15 1 4.0298 5.8469 -0.8668 16 6 3.3446 6.6293 -2.7520 17 7 2.4570 6.4758 -3.7013 18 14 4.3659 8.1913 -2.6720 19 1 5.8061 7.8475 -2.7861 20 1 3.9823 9.0913 -3.7891 21 1 4.1217 8.8766 -1.3773 22 1 -0.3632 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.2658 0.7996 2.4837 28 1 1.8193 2.3402 3.1824 29 1 3.2267 0.5177 3.8181 30 1 1.7792 0.7473 -2.7796 31 1 2.3146 2.2536 -4.6286 32 1 3.1308 4.5267 -4.1957 33 1 2.3296 7.1730 -4.3636 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396324776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:00 Heat of formation + Delta-G solvation = -32.078154 kcal Electronic energy + Delta-G solvation = -17049.772082 eV Core-core repulsion = 14358.646034 eV Total energy + Delta-G solvation = -2691.126048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.46362 -36.91592 -35.31947 -33.47275 -31.32364 -29.86861 -29.16678 -25.44344 -25.37508 -23.17471 -21.25006 -20.46652 -18.46334 -17.45331 -17.29743 -16.05697 -15.32845 -15.08496 -14.48436 -13.98409 -13.54040 -13.42658 -13.27817 -12.72827 -12.60931 -12.52710 -11.86732 -11.58896 -11.40756 -11.22794 -11.11670 -10.78977 -10.62221 -10.54513 -10.27387 -9.89447 -9.76396 -9.73862 -9.31626 -9.23452 -8.15074 -7.25110 -6.91478 -6.63110 -4.42544 1.83352 2.63364 2.68678 3.01373 3.02930 3.07212 3.26950 3.41684 3.85738 4.52401 4.66872 5.24509 5.33840 5.39661 5.48944 5.50473 5.61743 5.72974 5.96810 6.12700 6.18857 6.26800 6.45437 6.53577 6.61281 6.84470 6.93791 7.09753 7.23744 7.37372 7.61571 7.73308 7.80625 7.97346 8.10274 8.47507 8.69919 8.77932 10.05139 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025149 B = 0.006744 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.097476 B = 4150.562496 C = 5017.659886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.062 4.062 4 C -0.197 4.197 5 C 0.153 3.847 6 O -0.564 6.564 7 S 0.053 5.947 8 C -0.201 4.201 9 C -0.046 4.046 10 C -0.212 4.212 11 C -0.088 4.088 12 C -0.171 4.171 13 C 0.145 3.855 14 C -0.455 4.455 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.783 5.783 18 Si 0.910 3.090 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.263 1.263 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.373 0.627 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -6.683 6.744 9.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.077 4.077 4 C -0.313 4.313 5 C 0.075 3.925 6 O -0.369 6.369 7 S 0.319 5.681 8 C -0.316 4.316 9 C -0.053 4.053 10 C -0.234 4.234 11 C -0.107 4.107 12 C -0.194 4.194 13 C 0.139 3.861 14 C -0.484 4.484 15 H 0.098 0.902 16 C -0.141 4.141 17 N -0.407 5.407 18 Si 0.734 3.266 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.188 1.188 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.219 0.781 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.593 -5.105 6.932 8.755 hybrid contribution -0.272 -0.498 -0.445 0.721 sum -1.865 -5.603 6.487 8.772 Atomic orbital electron populations 1.21716 0.95269 1.00815 1.02272 1.20223 0.95483 0.92541 1.02178 1.19613 1.00702 0.95922 0.91492 1.23173 1.11816 0.99715 0.96559 1.20362 0.86429 0.95062 0.90691 1.86647 1.36410 1.76935 1.36925 1.83444 1.71955 1.10793 1.01922 1.22593 1.14988 0.99166 0.94874 1.18688 1.01532 0.92424 0.92635 1.20096 1.13821 0.99190 0.90273 1.20501 0.99091 0.94544 0.96587 1.21129 1.07009 0.94874 0.96424 1.16963 0.88605 0.91251 0.89293 1.19473 1.32707 0.93268 1.02953 0.90218 1.25908 0.93659 1.00562 0.93979 1.69828 1.24792 1.34253 1.11868 0.86322 0.81126 0.80164 0.78999 1.18572 1.20118 1.18778 0.93073 0.92184 0.92976 0.91158 0.91584 0.92434 0.93154 0.78114 0.89016 0.88810 0.85838 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 37.16 0.37 -1.63 16 2 C -0.06 -1.04 5.48 -27.88 -0.15 -1.19 16 3 C -0.06 -1.27 5.23 -103.65 -0.54 -1.81 16 4 C -0.20 -3.90 6.01 -36.21 -0.22 -4.12 16 5 C 0.15 2.31 6.81 36.01 0.25 2.55 16 6 O -0.56 -8.26 13.64 -35.23 -0.48 -8.74 16 7 S 0.05 1.18 22.79 -107.50 -2.45 -1.27 16 8 C -0.20 -5.14 6.36 -37.64 -0.24 -5.38 16 9 C -0.05 -1.10 6.01 -105.39 -0.63 -1.73 16 10 C -0.21 -4.82 9.78 -38.56 -0.38 -5.20 16 11 C -0.09 -2.06 9.97 -39.87 -0.40 -2.45 16 12 C -0.17 -4.44 8.68 -38.90 -0.34 -4.77 16 13 C 0.14 3.91 5.59 -106.56 -0.60 3.31 16 14 C -0.46 -12.11 8.82 -37.93 -0.33 -12.44 16 15 H 0.08 2.08 7.75 -52.49 -0.41 1.68 16 16 C 0.08 1.95 5.12 -17.33 -0.09 1.86 16 17 N -0.78 -19.85 10.97 55.55 0.61 -19.24 16 18 Si 0.91 18.53 29.60 -169.99 -5.03 13.50 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 H 0.05 0.68 7.75 -51.93 -0.40 0.28 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 26 H 0.07 0.97 7.15 -51.93 -0.37 0.60 16 27 H 0.06 0.74 6.82 -51.93 -0.35 0.38 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.37 3.20 9.12 45.56 0.42 3.62 16 30 H 0.09 1.84 7.62 -52.48 -0.40 1.44 16 31 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 33 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 292.82 15.07 4.41 4.41 Total: -1.00 -29.63 292.82 -9.30 -38.93 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.06 Total: 5.41 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: -3.30 Total: -33.00 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.24 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.48 Total: -8.74 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.45 Total: -1.27 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.63 -9.30 -38.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396324776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.855 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds