Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47217 * 2 1 4 4 C 1.36938 * 122.48989 * 270.02204 * 3 2 1 5 5 C 1.39923 * 124.82990 * 359.97438 * 4 3 2 6 6 H 1.08008 * 119.99923 * 0.02562 * 5 4 3 7 7 C 1.40182 * 120.00226 * 180.02562 * 5 4 3 8 8 N 1.30749 * 120.00156 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99989 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47219 * 59.99431 * 9 7 5 11 11 H 1.48498 * 109.47214 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46817 * 299.99827 * 9 7 5 13 13 S 1.75458 * 110.34485 * 179.97438 * 4 3 2 14 14 C 1.75978 * 91.78666 * 0.02562 * 13 4 3 15 15 C 1.39645 * 130.26960 * 179.97438 * 14 13 4 16 16 C 1.37659 * 120.28383 * 180.02562 * 15 14 13 17 17 C 1.38969 * 120.23563 * 359.89353 * 16 15 14 18 18 C 1.50699 * 119.67328 * 180.02562 * 17 16 15 19 19 O 1.42909 * 109.47244 * 270.07014 * 18 17 16 20 20 C 1.35913 * 120.65604 * 0.14186 * 17 16 15 21 21 C 1.39798 * 122.48553 * 89.99922 * 3 2 1 22 22 H 1.08993 * 109.47311 * 300.00025 * 1 2 3 23 23 H 1.09008 * 109.46903 * 59.99712 * 1 2 3 24 24 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46960 * 240.00037 * 2 1 3 26 26 H 1.08994 * 109.46691 * 120.00247 * 2 1 3 27 27 H 0.97000 * 120.00105 * 180.02562 * 8 7 5 28 28 H 1.08008 * 119.85842 * 0.05017 * 15 14 13 29 29 H 1.08005 * 119.87998 * 179.97438 * 16 15 14 30 30 H 1.08999 * 109.47479 * 30.06157 * 18 17 16 31 31 H 1.08997 * 109.47535 * 150.06834 * 18 17 16 32 32 H 0.96699 * 114.00319 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.76618 * 180.18968 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2771 2.1144 -1.1551 5 6 2.0973 1.6058 -2.4461 6 1 1.7402 0.5958 -2.5837 7 6 2.3807 2.4070 -3.5609 8 7 2.8125 3.6298 -3.3944 9 14 2.1399 1.7280 -5.2845 10 1 0.7176 1.3437 -5.4710 11 1 2.5076 2.7657 -6.2811 12 1 3.0037 0.5346 -5.4715 13 16 2.8484 3.7318 -0.7859 14 6 2.7440 3.4331 0.9452 15 6 3.0399 4.2681 2.0247 16 6 2.8817 3.8164 3.3154 17 6 2.4239 2.5262 3.5542 18 6 2.2548 2.0450 4.9722 19 8 3.4716 1.4436 5.4195 20 6 2.1295 1.6931 2.5214 21 6 2.2826 2.1287 1.1792 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 3.0082 4.1843 -4.1659 28 1 3.3941 5.2727 1.8462 29 1 3.1130 4.4676 4.1455 30 1 2.0093 2.8898 5.6158 31 1 1.4502 1.3109 5.0134 32 1 3.4353 1.1100 6.3264 33 1 1.7718 0.6943 2.7234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396325181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -48.574353 kcal Electronic energy + Delta-G solvation = -16981.738554 eV Core-core repulsion = 14289.897177 eV Total energy + Delta-G solvation = -2691.841377 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.60124 -36.58848 -35.29327 -33.69653 -31.22851 -29.96714 -29.15395 -25.92904 -24.94256 -22.77318 -21.59064 -20.39098 -18.35232 -17.42864 -17.14135 -16.09251 -15.50600 -14.74728 -14.37816 -13.94928 -13.64081 -13.12396 -12.94856 -12.67957 -12.46050 -12.18203 -12.05601 -11.61031 -11.51217 -11.22609 -11.08568 -10.80082 -10.60542 -10.26391 -10.22205 -9.83613 -9.71253 -9.54305 -9.23571 -8.99333 -8.33910 -7.35737 -7.16784 -6.32099 -4.62821 2.11510 2.32114 2.83334 2.84581 2.88455 3.30198 3.54264 3.58290 3.87184 4.50881 4.83783 5.16399 5.45500 5.48799 5.77126 5.90696 6.03772 6.11546 6.15028 6.42538 6.43691 6.65637 6.68104 6.71115 6.88939 6.90844 7.15253 7.15833 7.24083 7.33897 7.53689 7.62462 7.76756 7.86835 7.94372 8.11462 8.36378 8.47010 9.66181 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.006185 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.667274 B = 4525.885554 C = 5253.513581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.021 4.021 3 C -0.329 4.329 4 C 0.061 3.939 5 C -0.380 4.380 6 H 0.100 0.900 7 C 0.053 3.947 8 N -0.777 5.777 9 Si 0.936 3.064 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.259 1.259 13 S 0.134 5.866 14 C -0.260 4.260 15 C -0.056 4.056 16 C -0.178 4.178 17 C -0.088 4.088 18 C 0.124 3.876 19 O -0.567 6.567 20 C -0.124 4.124 21 C 0.023 3.977 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.301 0.699 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.369 0.631 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 -1.508 4.704 5.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.336 4.336 4 C -0.059 4.059 5 C -0.414 4.414 6 H 0.118 0.882 7 C -0.168 4.168 8 N -0.403 5.403 9 Si 0.759 3.241 10 H -0.183 1.183 11 H -0.198 1.198 12 H -0.183 1.183 13 S 0.396 5.604 14 C -0.375 4.375 15 C -0.079 4.079 16 C -0.199 4.199 17 C -0.091 4.091 18 C 0.047 3.953 19 O -0.372 6.372 20 C -0.144 4.144 21 C 0.015 3.985 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.214 0.786 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.210 0.101 3.057 3.290 hybrid contribution -0.699 -1.456 0.746 1.779 sum -1.910 -1.355 3.803 4.466 Atomic orbital electron populations 1.21747 0.97665 0.98937 1.01422 1.19544 0.93633 0.93425 0.99459 1.18234 1.26670 0.98602 0.90066 1.21230 0.94603 0.94260 0.95767 1.19297 1.33298 1.00306 0.88503 0.88196 1.26308 0.92680 0.94284 1.03523 1.68634 1.29640 1.07278 1.34775 0.85846 0.80359 0.79642 0.78263 1.18345 1.19758 1.18345 1.84812 1.70540 1.14527 0.90519 1.23689 1.13007 0.98889 1.01917 1.20139 0.99119 0.97397 0.91216 1.20281 1.08101 0.96022 0.95515 1.18693 1.03037 0.94712 0.92651 1.20982 0.85836 0.95379 0.93087 1.86659 1.36580 1.80103 1.33817 1.20371 1.04704 0.98152 0.91181 1.17798 0.95733 0.92212 0.92738 0.93801 0.92913 0.94764 0.93028 0.94161 0.88590 0.88006 0.88003 0.93711 0.93700 0.78586 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.89 37.16 0.37 -2.30 16 2 C -0.02 -0.45 5.65 -27.88 -0.16 -0.61 16 3 C -0.33 -8.08 5.20 -104.51 -0.54 -8.62 16 4 C 0.06 1.55 6.11 -39.42 -0.24 1.31 16 5 C -0.38 -9.22 8.83 -38.22 -0.34 -9.56 16 6 H 0.10 2.29 6.67 -52.48 -0.35 1.94 16 7 C 0.05 1.21 5.50 -17.28 -0.10 1.11 16 8 N -0.78 -18.10 10.58 55.56 0.59 -17.51 16 9 Si 0.94 16.89 29.56 -169.99 -5.03 11.86 16 10 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 11 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 12 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 13 S 0.13 3.31 20.13 -107.50 -2.16 1.15 16 14 C -0.26 -6.37 6.48 -38.27 -0.25 -6.62 16 15 C -0.06 -1.24 10.06 -39.27 -0.40 -1.63 16 16 C -0.18 -3.64 9.68 -39.52 -0.38 -4.03 16 17 C -0.09 -1.80 5.46 -105.19 -0.57 -2.37 16 18 C 0.12 1.97 7.15 36.01 0.26 2.23 16 19 O -0.57 -8.92 13.64 -35.23 -0.48 -9.40 16 20 C -0.12 -2.75 9.24 -39.00 -0.36 -3.12 16 21 C 0.02 0.57 5.84 -107.11 -0.63 -0.06 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.08 6.89 -51.93 -0.36 0.72 16 26 H 0.04 0.82 7.33 -51.93 -0.38 0.44 16 27 H 0.30 6.30 8.29 -40.82 -0.34 5.97 16 28 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 29 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.37 3.55 9.12 45.56 0.42 3.97 16 33 H 0.10 2.09 7.40 -52.49 -0.39 1.70 16 LS Contribution 292.72 15.07 4.41 4.41 Total: -1.00 -28.19 292.72 -9.15 -37.34 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.15 Total: 6.41 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: -3.34 Total: -34.26 kcal Atomic # 7 Polarization: -18.10 SS G_CDS: 0.59 Total: -17.51 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.48 Total: -9.40 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.16 Total: 1.15 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.19 -9.15 -37.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396325181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.233 kcal (2) G-P(sol) polarization free energy of solvation -28.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds