Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47217 * 2 1 4 4 C 1.36938 * 122.48989 * 270.02204 * 3 2 1 5 5 C 1.39923 * 124.82990 * 359.97438 * 4 3 2 6 6 H 1.08008 * 119.99923 * 0.02562 * 5 4 3 7 7 C 1.40182 * 120.00226 * 180.02562 * 5 4 3 8 8 N 1.30749 * 120.00156 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99989 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47219 * 59.99431 * 9 7 5 11 11 H 1.48498 * 109.47214 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46817 * 299.99827 * 9 7 5 13 13 S 1.75458 * 110.34485 * 179.97438 * 4 3 2 14 14 C 1.75978 * 91.78666 * 0.02562 * 13 4 3 15 15 C 1.39645 * 130.26960 * 179.97438 * 14 13 4 16 16 C 1.37659 * 120.28383 * 180.02562 * 15 14 13 17 17 C 1.38969 * 120.23563 * 359.89353 * 16 15 14 18 18 C 1.50699 * 119.67328 * 180.02562 * 17 16 15 19 19 O 1.42909 * 109.47244 * 270.07014 * 18 17 16 20 20 C 1.35913 * 120.65604 * 0.14186 * 17 16 15 21 21 C 1.39798 * 122.48553 * 89.99922 * 3 2 1 22 22 H 1.08993 * 109.47311 * 300.00025 * 1 2 3 23 23 H 1.09008 * 109.46903 * 59.99712 * 1 2 3 24 24 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46960 * 240.00037 * 2 1 3 26 26 H 1.08994 * 109.46691 * 120.00247 * 2 1 3 27 27 H 0.97000 * 120.00105 * 180.02562 * 8 7 5 28 28 H 1.08008 * 119.85842 * 0.05017 * 15 14 13 29 29 H 1.08005 * 119.87998 * 179.97438 * 16 15 14 30 30 H 1.08999 * 109.47479 * 30.06157 * 18 17 16 31 31 H 1.08997 * 109.47535 * 150.06834 * 18 17 16 32 32 H 0.96699 * 114.00319 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.76618 * 180.18968 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2771 2.1144 -1.1551 5 6 2.0973 1.6058 -2.4461 6 1 1.7402 0.5958 -2.5837 7 6 2.3807 2.4070 -3.5609 8 7 2.8125 3.6298 -3.3944 9 14 2.1399 1.7280 -5.2845 10 1 0.7176 1.3437 -5.4710 11 1 2.5076 2.7657 -6.2811 12 1 3.0037 0.5346 -5.4715 13 16 2.8484 3.7318 -0.7859 14 6 2.7440 3.4331 0.9452 15 6 3.0399 4.2681 2.0247 16 6 2.8817 3.8164 3.3154 17 6 2.4239 2.5262 3.5542 18 6 2.2548 2.0450 4.9722 19 8 3.4716 1.4436 5.4195 20 6 2.1295 1.6931 2.5214 21 6 2.2826 2.1287 1.1792 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 3.0082 4.1843 -4.1659 28 1 3.3941 5.2727 1.8462 29 1 3.1130 4.4676 4.1455 30 1 2.0093 2.8898 5.6158 31 1 1.4502 1.3109 5.0134 32 1 3.4353 1.1100 6.3264 33 1 1.7718 0.6943 2.7234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396325181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -64.807103 kcal Electronic energy + Delta-G solvation = -16982.442459 eV Core-core repulsion = 14289.897177 eV Total energy + Delta-G solvation = -2692.545282 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25470 -37.98208 -36.87073 -35.39150 -32.83122 -31.59979 -30.90442 -27.53990 -26.49433 -24.40483 -23.30516 -22.01991 -20.07447 -19.20002 -18.30050 -17.83744 -17.09606 -16.25621 -15.95712 -15.53931 -15.11288 -14.78130 -14.53469 -14.20061 -14.08341 -13.82381 -13.64696 -13.18377 -13.06680 -12.87751 -12.67268 -12.34065 -12.07402 -11.90925 -11.84054 -11.42212 -11.25785 -10.92856 -10.90172 -10.83056 -10.07578 -9.14584 -8.87003 -8.16999 -6.43686 0.37471 0.63542 1.34763 1.35475 1.48252 1.51068 1.87427 1.95150 2.15458 2.86503 3.21344 3.77471 4.07768 4.20439 4.35386 4.47935 4.54406 4.57426 4.63756 4.76448 4.82732 4.94054 5.00957 5.10234 5.23347 5.25019 5.47111 5.52792 5.55759 5.64251 5.82202 5.90598 6.02113 6.18417 6.39141 6.59855 6.66393 7.00744 7.99176 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.006185 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.667274 B = 4525.885554 C = 5253.513581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.019 4.019 3 C -0.350 4.350 4 C 0.032 3.968 5 C -0.406 4.406 6 H 0.105 0.895 7 C 0.017 3.983 8 N -0.803 5.803 9 Si 1.007 2.993 10 H -0.254 1.254 11 H -0.262 1.262 12 H -0.255 1.255 13 S 0.103 5.897 14 C -0.287 4.287 15 C -0.071 4.071 16 C -0.173 4.173 17 C -0.091 4.091 18 C 0.128 3.872 19 O -0.589 6.589 20 C -0.138 4.138 21 C -0.004 4.004 22 H 0.039 0.961 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.309 0.691 28 H 0.118 0.882 29 H 0.135 0.865 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.396 0.604 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -2.178 5.779 6.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.357 4.357 4 C -0.087 4.087 5 C -0.440 4.440 6 H 0.123 0.877 7 C -0.202 4.202 8 N -0.430 5.430 9 Si 0.826 3.174 10 H -0.178 1.178 11 H -0.186 1.186 12 H -0.179 1.179 13 S 0.365 5.635 14 C -0.402 4.402 15 C -0.093 4.093 16 C -0.194 4.194 17 C -0.094 4.094 18 C 0.051 3.949 19 O -0.398 6.398 20 C -0.158 4.158 21 C -0.012 4.012 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.153 0.847 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.246 0.754 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.646 -0.570 4.178 4.527 hybrid contribution -0.521 -1.212 0.602 1.450 sum -2.167 -1.782 4.780 5.542 Atomic orbital electron populations 1.21628 0.95937 1.00682 1.00460 1.19559 0.95088 0.91721 0.99467 1.18662 1.26951 1.00037 0.90006 1.21587 0.95737 0.94503 0.96878 1.19589 1.34441 1.00984 0.88952 0.87718 1.27251 0.91612 0.94225 1.07101 1.68688 1.29675 1.08318 1.36270 0.84812 0.80379 0.79102 0.73119 1.17808 1.18625 1.17934 1.84613 1.71539 1.15422 0.91966 1.23925 1.14524 0.99789 1.01936 1.20479 0.99289 0.98041 0.91479 1.20744 1.06301 0.96597 0.95711 1.19282 1.00769 0.94360 0.94951 1.20954 0.86343 0.97036 0.90552 1.86566 1.36489 1.80385 1.36359 1.20598 1.05345 0.99138 0.90742 1.18160 0.96504 0.92547 0.93950 0.94229 0.94339 0.91559 0.93368 0.93587 0.87715 0.86407 0.84671 0.90861 0.91946 0.75362 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 9.89 71.98 0.71 -4.15 16 2 C -0.02 -0.81 5.65 29.85 0.17 -0.64 16 3 C -0.35 -17.68 5.20 -19.79 -0.10 -17.78 16 4 C 0.03 1.70 6.11 22.37 0.14 1.83 16 5 C -0.41 -20.27 8.83 23.15 0.20 -20.07 16 6 H 0.11 4.93 6.67 -2.91 -0.02 4.91 16 7 C 0.02 0.76 5.50 85.33 0.47 1.22 16 8 N -0.80 -38.26 10.58 21.87 0.23 -38.03 16 9 Si 1.01 34.26 29.56 68.60 2.03 36.29 16 10 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 11 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 12 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 13 S 0.10 5.32 20.13 -56.49 -1.14 4.18 16 14 C -0.29 -14.40 6.48 23.12 0.15 -14.25 16 15 C -0.07 -3.08 10.06 22.47 0.23 -2.85 16 16 C -0.17 -6.70 9.68 22.31 0.22 -6.48 16 17 C -0.09 -3.51 5.46 -20.23 -0.11 -3.63 16 18 C 0.13 3.58 7.15 71.24 0.51 4.09 16 19 O -0.59 -16.45 13.64 -148.98 -2.03 -18.48 16 20 C -0.14 -6.05 9.24 22.65 0.21 -5.84 16 21 C 0.00 -0.19 5.84 -21.48 -0.13 -0.32 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 2.04 6.89 -2.38 -0.02 2.03 16 26 H 0.05 1.86 7.33 -2.39 -0.02 1.85 16 27 H 0.31 13.14 8.29 -92.71 -0.77 12.37 16 28 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 29 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.06 1.53 8.07 -2.39 -0.02 1.51 16 32 H 0.40 6.09 9.12 -74.06 -0.68 5.41 16 33 H 0.11 4.50 7.40 -2.91 -0.02 4.47 16 Total: -1.00 -62.27 292.72 2.21 -60.06 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.46 Total: 24.84 kcal Atomic # 6 Polarization: -71.53 SS G_CDS: 2.66 Total: -68.87 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.23 Total: -38.03 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -2.03 Total: -18.48 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -1.14 Total: 4.18 kcal Total: -62.27 2.21 -60.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396325181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.744 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds