Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46742 * 2 1 4 4 C 1.31695 * 122.55511 * 269.99409 * 3 2 1 5 5 C 1.50706 * 124.24159 * 0.02562 * 4 3 2 6 6 O 1.42899 * 109.46723 * 90.00149 * 5 4 3 7 7 S 1.75255 * 111.51892 * 180.02562 * 4 3 2 8 8 C 1.75999 * 92.25446 * 359.97438 * 7 4 3 9 9 C 1.40473 * 130.26731 * 180.02562 * 8 7 4 10 10 C 1.35670 * 120.82271 * 179.73534 * 9 8 7 11 11 C 1.41155 * 120.10921 * 0.52158 * 10 9 8 12 12 C 1.41275 * 120.06210 * 179.75531 * 11 10 9 13 13 H 1.07995 * 119.99907 * 154.83621 * 12 11 10 14 14 C 1.39862 * 120.00020 * 334.84223 * 12 11 10 15 15 N 1.30893 * 119.99729 * 342.25827 * 14 12 11 16 16 Si 1.86793 * 119.99851 * 162.25499 * 14 12 11 17 17 H 1.48501 * 109.47199 * 94.64991 * 16 14 12 18 18 H 1.48503 * 109.46977 * 214.64913 * 16 14 12 19 19 H 1.48504 * 109.47244 * 334.64759 * 16 14 12 20 20 C 1.39909 * 119.88132 * 359.48504 * 11 10 9 21 21 C 1.40150 * 109.56173 * 0.02562 * 8 7 4 22 22 H 1.08996 * 109.47819 * 300.00370 * 1 2 3 23 23 H 1.09003 * 109.46573 * 60.00887 * 1 2 3 24 24 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47819 * 239.99630 * 2 1 3 26 26 H 1.09003 * 109.46573 * 119.99113 * 2 1 3 27 27 H 1.08995 * 109.47072 * 210.00093 * 5 4 3 28 28 H 1.08999 * 109.46991 * 330.00209 * 5 4 3 29 29 H 0.96707 * 113.99768 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.58125 * 359.97438 * 9 8 7 31 31 H 1.08006 * 119.94305 * 180.27539 * 10 9 8 32 32 H 0.97003 * 119.99647 * 180.02562 * 15 14 12 33 33 H 1.07998 * 120.01061 * 180.23013 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2686 2.0890 -1.1100 5 6 2.0703 1.5293 -2.4952 6 8 0.7376 1.8020 -2.9327 7 16 2.8425 3.7106 -0.7745 8 6 2.7523 3.4574 0.9648 9 6 3.0588 4.3256 2.0258 10 6 2.9119 3.9275 3.3144 11 6 2.4565 2.6234 3.6051 12 6 2.3088 2.2082 4.9473 13 1 1.6125 1.4208 5.1955 14 6 3.0642 2.8169 5.9548 15 7 4.1340 3.5047 5.6456 16 14 2.5461 2.6483 7.7416 17 1 3.2734 1.5123 8.3627 18 1 2.8692 3.9009 8.4709 19 1 1.0841 2.3978 7.8116 20 6 2.1463 1.7446 2.5616 21 6 2.2934 2.1594 1.2270 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8935 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.7797 1.9941 -3.1798 28 1 2.2340 0.4518 -2.4785 29 1 0.5386 1.4691 -3.8186 30 1 3.4122 5.3237 1.8129 31 1 3.1475 4.6082 4.1192 32 1 4.6581 3.9266 6.3444 33 1 1.7942 0.7477 2.7816 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396326883.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = -31.672241 kcal Electronic energy + Delta-G solvation = -16945.877239 eV Core-core repulsion = 14254.768792 eV Total energy + Delta-G solvation = -2691.108447 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.53908 -36.98839 -35.37171 -33.48040 -31.21794 -29.83655 -29.29948 -25.91058 -25.06920 -23.22035 -21.19609 -20.49931 -18.50586 -17.42110 -17.33966 -16.28938 -15.34348 -15.19036 -14.47377 -13.88238 -13.50881 -13.46431 -13.18519 -13.07410 -12.57282 -12.16221 -11.83086 -11.80475 -11.51848 -11.34504 -11.13989 -10.82037 -10.66829 -10.56638 -10.16981 -9.97513 -9.80968 -9.72573 -9.41642 -9.17174 -8.28613 -7.32470 -6.95616 -6.66167 -4.43557 1.77077 2.50225 2.60932 3.02122 3.03919 3.05055 3.10415 3.37184 3.85789 4.46082 4.60685 5.16781 5.32235 5.39828 5.51339 5.53373 5.56194 5.81173 6.01242 6.08125 6.23913 6.31520 6.49665 6.63705 6.69999 6.80609 6.90497 7.05325 7.16583 7.47566 7.51515 7.68268 7.70209 7.88564 8.09775 8.44432 8.75590 8.78682 10.06807 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.005579 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.034029 B = 5017.530262 C = 5712.310175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.054 4.054 4 C -0.188 4.188 5 C 0.153 3.847 6 O -0.562 6.562 7 S 0.012 5.988 8 C -0.217 4.217 9 C -0.082 4.082 10 C -0.117 4.117 11 C 0.113 3.887 12 C -0.457 4.457 13 H 0.081 0.919 14 C 0.076 3.924 15 N -0.793 5.793 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.206 4.206 21 C -0.039 4.039 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.373 0.627 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.283 0.717 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -3.631 -9.120 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.068 4.068 4 C -0.303 4.303 5 C 0.074 3.926 6 O -0.367 6.367 7 S 0.275 5.725 8 C -0.332 4.332 9 C -0.105 4.105 10 C -0.138 4.138 11 C 0.109 3.891 12 C -0.486 4.486 13 H 0.099 0.901 14 C -0.142 4.142 15 N -0.418 5.418 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.229 4.229 21 C -0.045 4.045 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.219 0.781 30 H 0.113 0.887 31 H 0.144 0.856 32 H 0.094 0.906 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.038 -1.988 -9.371 9.794 hybrid contribution -0.316 -1.337 1.184 1.814 sum -2.354 -3.325 -8.188 9.145 Atomic orbital electron populations 1.21711 0.94765 1.00781 1.02793 1.20243 0.96147 0.92135 1.01866 1.19690 0.99150 0.96476 0.91531 1.22869 1.12144 0.98645 0.96659 1.20347 0.83771 0.97889 0.90558 1.86649 1.30475 1.82655 1.36958 1.83248 1.74014 1.13052 1.02190 1.21909 1.17828 0.99365 0.94083 1.19812 1.01924 0.96993 0.91737 1.21102 1.01626 0.96771 0.94333 1.17439 0.88415 0.90449 0.92763 1.19546 1.20300 1.17774 0.91000 0.90081 1.25940 0.93260 0.93050 1.01990 1.69834 1.10778 1.25129 1.36071 0.86265 0.80467 0.78682 0.81183 1.19469 1.19942 1.18304 1.20704 1.13879 0.98906 0.89415 1.18738 1.00895 0.91971 0.92864 0.92363 0.92091 0.93191 0.91961 0.90997 0.93273 0.92312 0.78107 0.88748 0.85557 0.90626 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.89 37.16 0.37 -1.80 16 2 C -0.06 -1.05 5.78 -27.88 -0.16 -1.21 16 3 C -0.05 -1.08 5.23 -103.58 -0.54 -1.62 16 4 C -0.19 -3.55 6.00 -36.18 -0.22 -3.76 16 5 C 0.15 2.18 7.13 36.01 0.26 2.43 16 6 O -0.56 -7.71 13.37 -35.23 -0.47 -8.18 16 7 S 0.01 0.24 23.19 -107.50 -2.49 -2.26 16 8 C -0.22 -5.14 6.51 -38.02 -0.25 -5.39 16 9 C -0.08 -1.97 9.99 -39.66 -0.40 -2.37 16 10 C -0.12 -3.00 8.60 -39.39 -0.34 -3.34 16 11 C 0.11 2.96 5.55 -107.01 -0.59 2.36 16 12 C -0.46 -11.74 9.03 -37.82 -0.34 -12.08 16 13 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 14 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 15 N -0.79 -19.83 10.98 55.54 0.61 -19.22 16 16 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 20 C -0.21 -5.09 9.52 -38.09 -0.36 -5.45 16 21 C -0.04 -0.92 6.01 -105.39 -0.63 -1.55 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 26 H 0.07 1.19 7.58 -51.93 -0.39 0.80 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.72 6.49 -51.93 -0.34 0.38 16 29 H 0.37 2.94 9.12 45.56 0.42 3.35 16 30 H 0.09 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.13 3.25 6.18 -52.48 -0.32 2.93 16 32 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 33 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 LS Contribution 292.83 15.07 4.41 4.41 Total: -1.00 -28.85 292.83 -9.29 -38.14 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -3.02 Total: 6.13 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -3.30 Total: -32.04 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.61 Total: -19.22 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.47 Total: -8.18 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.49 Total: -2.26 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.85 -9.29 -38.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396326883.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.471 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds